View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20442_high_9 (Length: 260)

Name: NF20442_high_9
Description: NF20442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20442_high_9
NF20442_high_9
[»] chr5 (2 HSPs)
chr5 (1-244)||(20477076-20477319)
chr5 (86-123)||(17205980-17206017)
[»] chr6 (7 HSPs)
chr6 (8-244)||(6424083-6424300)
chr6 (1-123)||(10578799-10578921)
chr6 (62-123)||(19633344-19633405)
chr6 (170-214)||(14821712-14821756)
chr6 (186-243)||(6395878-6395936)
chr6 (186-244)||(6433189-6433247)
chr6 (62-130)||(6602478-6602546)
[»] chr4 (1 HSPs)
chr4 (169-210)||(1547373-1547414)
[»] chr1 (1 HSPs)
chr1 (59-123)||(33161430-33161494)


Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 20477319 - 20477076
Alignment:
Q  1 gaggttggtgaacctttggagtaggcctttgacgaaagggactgttgagggattgacagtgagtgagaataggagagaatttgttatagagaggaactgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20477319 gaggttggtgaacctttggagtaggcctttgacgaaagggactgttgagggattgacagtgagtgagaataggagagaatttgttatagagaggaactgt 20477220  T
Q  101 ttggagacgcgggatagagaattgaaacaaggacgaggattcaaacggtgacgattgttgtcgttaaggatgaatttgaaaatagattcccaacagtcgt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20477219 ttggagacgcgggatagagaattgaaacaaggacgaggattcaaacggtgacgattgttgtcgttaaggatgaatttgaaaatagattcccaacagtcgt 20477120  T
Q  201 cgggtaaatataaatatgtttcttcttcatccaattgttgtgaa 244  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
T  20477119 cgggtaaatataaatatgcttcttcttcatccaattgttgtgaa 20477076  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 123
Target Start/End: Original strand, 17205980 - 17206017
Alignment:
Q  86 atagagaggaactgtttggagacgcgggatagagaatt 123  Q
    |||||||| ||||||||||||||| |||||||||||||    
T  17205980 atagagagtaactgtttggagacgagggatagagaatt 17206017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 8 - 244
Target Start/End: Original strand, 6424083 - 6424300
Alignment:
Q  8 gtgaacctttggagtaggcctttgacgaaagggactgttgagggattgacagtgagtgagaataggagagaatttgttatagagaggaactgtttggaga 107  Q
    |||||||||| |||||||| ||||| |||||||| |||||||   | ||| |||||||||||||||||||| || ||||  |||||||||||||||||||    
T  6424083 gtgaaccttttgagtaggcgtttgaggaaagggagtgttgagctgtagaccgtgagtgagaataggagagagttggttacggagaggaactgtttggaga 6424182  T
Q  108 cgcgggatagagaattgaaacaaggacgaggattcaaacggtgacgattgttgtcgttaaggatgaatttgaaaatagattcccaacagtcgtcgggtaa 207  Q
    || |||| |||||                  |||||||| | ||||| ||| || ||||| |||||||||||||||||||||||||   ||||| |||||    
T  6424183 cgagggaaagaga------------------attcaaacagcgacgactgtcgt-gttaaagatgaatttgaaaatagattcccaaacttcgtcaggtaa 6424263  T
Q  208 atataaatatgtttcttcttcatccaattgttgtgaa 244  Q
    |||||||||||||||||||||| | ||||||||||||    
T  6424264 atataaatatgtttcttcttcaacgaattgttgtgaa 6424300  T

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Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 10578921 - 10578799
Alignment:
Q  1 gaggttggtgaacctttggagtaggcctttgacgaaagggactgttgagggattgacagtgagtgagaataggagagaatttgttatagagaggaactgt 100  Q
    |||||||| |||||||| |||||||  ||||| |||||||||| ||||||||| |||   ||||||||||||||||   || ||||| |||||||| |||    
T  10578921 gaggttggggaaccttttgagtaggtatttgaggaaagggactcttgagggatagacgtcgagtgagaataggagactgttggttatggagaggaattgt 10578822  T
Q  101 ttggagacgcgggatagagaatt 123  Q
    ||||||||| | |||||||||||    
T  10578821 ttggagacgagagatagagaatt 10578799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 62 - 123
Target Start/End: Original strand, 19633344 - 19633405
Alignment:
Q  62 agtgagaataggagagaatttgttatagagaggaactgtttggagacgcgggatagagaatt 123  Q
    ||||||||||||||| |||| ||||| ||||||||||||||||||||| |||||||||||||    
T  19633344 agtgagaataggagacaattggttattgagaggaactgtttggagacgagggatagagaatt 19633405  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 214
Target Start/End: Original strand, 14821712 - 14821756
Alignment:
Q  170 atgaatttgaaaatagattcccaacagtcgtcgggtaaatataaa 214  Q
    ||||||||||| |||||||||||||| || |||||||||||||||    
T  14821712 atgaatttgaagatagattcccaacaatcatcgggtaaatataaa 14821756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 243
Target Start/End: Original strand, 6395878 - 6395936
Alignment:
Q  186 attcccaacagtc-gtcgggtaaatataaatatgtttcttcttcatccaattgttgtga 243  Q
    |||||||||| || ||||||||||||| ||||||||||||| ||| ||| |||||||||    
T  6395878 attcccaacactcagtcgggtaaatatgaatatgtttcttcgtcaaccatttgttgtga 6395936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 244
Target Start/End: Original strand, 6433189 - 6433247
Alignment:
Q  186 attcccaacagtcgtcgggtaaatataaatatgtttcttcttcatccaattgttgtgaa 244  Q
    ||||||||||||| || ||||||| | ||||| ||||||| ||| ||||||||||||||    
T  6433189 attcccaacagtcatcaggtaaatttgaatatatttcttcctcaaccaattgttgtgaa 6433247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 130
Target Start/End: Complemental strand, 6602546 - 6602478
Alignment:
Q  62 agtgagaataggagagaatttgttatagagaggaactgtttggagacgcgggatagagaattgaaacaa 130  Q
    ||||||||||||||| | || || |  |||||||| |||||||||||| |||||||||| || ||||||    
T  6602546 agtgagaataggagacagttggtgacggagaggaaatgtttggagacgagggatagagattttaaacaa 6602478  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 169 - 210
Target Start/End: Complemental strand, 1547414 - 1547373
Alignment:
Q  169 gatgaatttgaaaatagattcccaacagtcgtcgggtaaata 210  Q
    |||||||||||| |||||||||||||| ||||| ||||||||    
T  1547414 gatgaatttgaagatagattcccaacactcgtcaggtaaata 1547373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 123
Target Start/End: Original strand, 33161430 - 33161494
Alignment:
Q  59 gtgagtgagaataggagagaatttgttatagagaggaactgtttggagacgcgggatagagaatt 123  Q
    |||||||||||| | |||  ||| || || ||||| ||||||||||||||| |||||||||||||    
T  33161430 gtgagtgagaatcgaagactattagtgatggagagaaactgtttggagacgagggatagagaatt 33161494  T

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