View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20442_low_1 (Length: 480)

Name: NF20442_low_1
Description: NF20442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20442_low_1
NF20442_low_1
[»] chr3 (24 HSPs)
chr3 (13-464)||(679625-680076)
chr3 (13-464)||(747543-747999)
chr3 (147-459)||(9595049-9595361)
chr3 (58-459)||(2491317-2491726)
chr3 (173-335)||(9562507-9562672)
chr3 (57-459)||(2474346-2474749)
chr3 (58-325)||(2475887-2476159)
chr3 (272-384)||(9566320-9566432)
chr3 (74-222)||(755292-755445)
chr3 (355-435)||(2635214-2635294)
chr3 (58-222)||(7334931-7335100)
chr3 (58-222)||(9566482-9566651)
chr3 (257-335)||(2659674-2659752)
chr3 (253-325)||(2630771-2630843)
chr3 (58-322)||(7443554-7443823)
chr3 (58-214)||(7325065-7325226)
chr3 (256-326)||(755176-755246)
chr3 (403-464)||(2501751-2501812)
chr3 (36-80)||(2634861-2634905)
chr3 (253-323)||(2644902-2644972)
chr3 (363-457)||(2659549-2659643)
chr3 (362-432)||(7324862-7324932)
chr3 (403-464)||(2630909-2630970)
chr3 (403-459)||(2644763-2644819)


Alignment Details
Target: chr3 (Bit Score: 411; Significance: 0; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 13 - 464
Target Start/End: Complemental strand, 680076 - 679625
Alignment:
Q  13 gacatcatcgtccatacggctggaaccataacatctccgccgccacttcccactcttctcttcgatgtcctccctgagattctcggtaggtttcccatca 112  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  680076 gacatcatcgtccatacggctggaaccataacatctccgccaccacttcccactcttctcttcgatgtcctccctgagattctcggtaggtttcccatca 679977  T
Q  113 aattaccaacttcgatgcctctgtaagnnnnnnnattctcttattgctgatccaacattcgcaaagaagcaccttcaattatcaactaagcgccacaacc 212  Q
    |||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  679976 aattaccaacttcgatgcctctgtaagtttttttattctcttattgctgatccaacattcgcaaagaagcaccttcaattatcaactaagcgccacaacc 679877  T
Q  213 tcatgataacctcttggaacaacttggctgagttagttgagtatgattctccaatcccctcgattttatcaacttctaccgttgttacacatacacaact 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  679876 tcatgataacctcttggaacaacttggctgagttagttgagtatgattctccaatcccctcgattttatcaacttctaccgttgttacacatacacaact 679777  T
Q  313 ttaccctcctaatattcttacaatttgaggtaactttgtggacgtaatgtgctcttgcgatggcatcttttgctgcatgctaaaagctggttcttatttg 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  679776 ttaccctcctaatattcttacaatttgaggtaactttgtggacgtaatgtgctcttgcgatggcatcttttgctgaatgctaaaagctggttcttatttg 679677  T
Q  413 ttgtggaatccttccattagaaagtatacgttacttcctcctttggagaatc 464  Q
    ||||||||||||||| |||||||||||| |||||| ||||||||||||||||    
T  679676 ttgtggaatccttccgttagaaagtataagttactccctcctttggagaatc 679625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 13 - 464
Target Start/End: Complemental strand, 747999 - 747543
Alignment:
Q  13 gacatcatcgtccatacggctggaaccataacatctccgccgccacttcccactcttctcttcgatgtcctccctgagattctcggtaggtttcccatca 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||  |||||||| ||||||||||| |||||||||    
T  747999 gacatcatcgtccatacggctggaaccataacatctccgccgccacttcccactcttccattcgatgttttccctgagtttctcggtaggcttcccatca 747900  T
Q  113 aattac-----caacttcgatgcctctgtaagnnnnnnnattctcttattgctgatccaacattcgcaaagaagcaccttcaattatcaactaagcgcca 207  Q
    ||||||     |||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  747899 aattactcgtacaacttcgatgcctctgtaagtttttttattctcttattgctgatccaacattcgcaaagaagcaccttcaattatcaactaagcgcca 747800  T
Q  208 caacctcatgataacctcttggaacaacttggctgagttagttgagtatgattctccaatcccctcgattttatcaacttctaccgttgttacacataca 307  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||| ||||||||||||||||    
T  747799 ccacctcatgataacctcttggaacaacttggctgagttagttgagtatgtttctccaatcccctcggttttatctacttctatcgttgttacacataca 747700  T
Q  308 caactttaccctcctaatattcttacaatttgaggtaactttgtggacgtaatgtgctcttgcgatggcatcttttgctgcatgctaaaagctggttctt 407  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |    
T  747699 caactttaccctcctaatactcttacaattcgaggtaactttgtggacgtaatgtgatcttgcgatggcatcttttgctgcatgctaaaagctggttcat 747600  T
Q  408 atttgttgtggaatccttccattagaaagtatacgttacttcctcctttggagaatc 464  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  747599 atttgttgtggaatccttccattagaaagtatacgttacttcctcctttggagaatc 747543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 147 - 459
Target Start/End: Complemental strand, 9595361 - 9595049
Alignment:
Q  147 attctcttattgctgatccaacattcgcaaagaagcaccttcaattatcaactaagcgccacaacctcatgataacctcttggaacaacttggctgagtt 246  Q
    ||||||||||| ||||||||| ||| |||||||| ||||||||||| ||||| ||||||||| ||||||||||| |||||  ||||||||||||||| ||    
T  9595361 attctcttatttctgatccaaaatttgcaaagaatcaccttcaattgtcaacaaagcgccaccacctcatgatagcctctatgaacaacttggctgattt 9595262  T
Q  247 agttgagtatgattctccaatcccctcgattttatcaacttctaccgttgttacacatacacaactttaccctcctaatattcttacaatttgaggtaac 346  Q
    ||||   |||||||||||||||| |||  |||| || ||||||||| |||||||||| |||||||||||||||||||||| ||| |||| | ||  |||     
T  9595261 agttctatatgattctccaatccactcagttttttctacttctaccattgttacacagacacaactttaccctcctaatactctcacaaatggatctaaa 9595162  T
Q  347 tttgtggacgtaatgtgctcttgcgatggcatcttttgctgcatgctaaaagctggttcttatttgttgtggaatccttccattagaaagtatacgttac 446  Q
    |  ||||||||| ||||||||||||||||||| ||||| ||  | || ||  ||||||||||| | |||||||| |||||||||||||| | || ||||     
T  9595161 tacgtggacgtattgtgctcttgcgatggcattttttgttgttttctcaagcctggttcttatgttttgtggaacccttccattagaaaatttaagttat 9595062  T
Q  447 ttcctcctttgga 459  Q
    | |||||||||||    
T  9595061 tgcctcctttgga 9595049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 58 - 459
Target Start/End: Original strand, 2491317 - 2491726
Alignment:
Q  58 cttcccactcttctcttcgatgtcctccctgagattctcggtaggtttcccatcaaattac-----caacttcgatgcctctgtaagnnnnnnnattctc 152  Q
    ||||| |||||||  || |||||||| |||||||||||  ||||| ||||  | |||||||     || ||||||||||| ||||||       |||||     
T  2491317 cttccaactcttccttttgatgtcctgcctgagattctgtgtaggcttccggtgaaattactggtacagcttcgatgcctttgtaagtttttcaattctt 2491416  T
Q  153 ttattgctgatccaacattcgcaaagaagcaccttcaattatcaactaagcgccacaacctcatgataacctcttggaacaacttggctgagttagttga 252  Q
    | ||| ||||||| | ||||||||| ||||| |||||||| ||||| ||||||||| |||||||| |||||||    |||||||||| |||||| ||| |    
T  2491417 taatttctgatcctaaattcgcaaaaaagcatcttcaattgtcaacaaagcgccaccacctcatggtaacctcaaaaaacaacttgggtgagttggttca 2491516  T
Q  253 gtatgattctccaatcccctcgattttatcaacttctaccgttgttacacatacacaactttaccctcctaatattcttacaatttgaggtaactttgtg 352  Q
      ||||||| ||||| |||||| |||| || |||||||||||| ||||||| || |||||||||||||||| || ||| |||| | ||  ||| ||| ||    
T  2491517 tcatgattccccaataccctcgcttttttctacttctaccgttattacacagacccaactttaccctcctactaatctcacaaatggacataaatttatg 2491616  T
Q  353 gacgtaatgtgctcttgcgatggcatcttttgctgc---atgctaaaagctggttcttatttgttgtggaatccttccattagaaagtatacgttacttc 449  Q
       |||| ||||| ||| |||||||||||||| |||    |||| || |  | ||||| |||  ||||||| |||||||||||||||| || |||| | |    
T  2491617 ttggtaaggtgctattgtgatggcatcttttgttgcgtggtgcttaatggcgtttctttttttctgtggaacccttccattagaaagtttaagttattgc 2491716  T
Q  450 ctcctttgga 459  Q
    ||||||||||    
T  2491717 ctcctttgga 2491726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 173 - 335
Target Start/End: Complemental strand, 9562672 - 9562507
Alignment:
Q  173 gcaaagaagcaccttcaattatcaactaagcgccacaacctcatgataacctcttggaacaacttg---gctgagttagttgagtatgattctccaatcc 269  Q
    |||||||||||||||||||| ||||||||||||||| ||||| || |||||||||||||||  | |   | |||||| ||| || ||||||  |||||||    
T  9562672 gcaaagaagcaccttcaattgtcaactaagcgccaccacctcttggtaacctcttggaacatttcgcgtggtgagtttgttcagcatgatttcccaatcc 9562573  T
Q  270 cctcgattttatcaacttctaccgttgttacacatacacaactttaccctcctaatattcttacaa 335  Q
    ||| | |||| || |||||||||| ||||||||| |||||||||||| ||||||||||||| ||||    
T  9562572 ccttggttttttctacttctaccgctgttacacagacacaactttacgctcctaatattctcacaa 9562507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 57 - 459
Target Start/End: Original strand, 2474346 - 2474749
Alignment:
Q  57 acttcccactcttctcttcgatgtcctccctgagattctcggtaggtttcccatcaaattacc-----aacttcgatgcctctgtaagnnnnnnnattct 151  Q
    |||||||||||||| ||| ||| |||| |||||||||||| ||||| ||||| ||||||||||     | ||||| ||||||||||||       |||||    
T  2474346 acttcccactcttccctttgatctcctgcctgagattctctgtaggcttcccgtcaaattacctgtacagcttcggtgcctctgtaagttctttaattct 2474445  T
Q  152 cttattgctgatccaacattcgcaaagaagcaccttcaattatcaactaagcgccacaacctcatgataacctcttggaacaacttggctgagttagttg 251  Q
     | ||| |  |||| | |||||||||||| ||||||||||||||||  ||||||||| |||||||| |||| ||| | ||| |||| | |||||  |||     
T  2474446 ttaatttccaatcccagattcgcaaagaaacaccttcaattatcaaacaagcgccaccacctcatggtaacatctagcaactacttaggtgagtacgttc 2474545  T
Q  252 agtatgattctccaatcccctcgattttatcaacttctaccgttgttacacatacacaactttaccctcctaatattcttacaatttgaggtaactttgt 351  Q
    |||||||||| ||||| |||||| |||| || |  ||||   |  ||| ||| |||||||||||||||||||||| | | | | || ||  |||||  |     
T  2474546 agtatgattccccaataccctcgcttttttctaagtcta---tcattatacagacacaactttaccctcctaatagtatcaaacttggacataactacgc 2474642  T
Q  352 ggacgtaatgtgctcttgcgatggcatcttttgctgcatgctaaaagctggttcttatttgttgtggaatccttccattagaaagtatacgttacttcct 451  Q
       |||  |||||||||| ||||||||||||||| ||| ||| |||| ||| |||||||| |||||||| ||||||||| |||| | || |||| | |||    
T  2474643 cttcgtgttgtgctcttgtgatggcatcttttgcggcacgctcaaagatggctcttattt-ttgtggaacccttccattggaaaatttaagttattgcct 2474741  T
Q  452 cctttgga 459  Q
    ||||||||    
T  2474742 cctttgga 2474749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 58 - 325
Target Start/End: Original strand, 2475887 - 2476159
Alignment:
Q  58 cttcccactcttctcttcgatgtcctccctgagattctcggtaggtttcccatcaaattac-----caacttcgatgcctctgtaagnnnnnnnattctc 152  Q
    ||||||||||||| ||| |||||||| |||||||||||   |||||| ||  |||||||||     || ||||| ||||| ||||||       ||||||    
T  2475887 cttcccactcttccctttgatgtcctgcctgagattctgtttaggttacctgtcaaattactcgtacagcttcggtgcctttgtaagtttttcaattctc 2475986  T
Q  153 ttattgctgatccaacattcgcaaagaagcaccttcaattatcaactaagcgccacaacctcatgataacctcttggaacaacttggctgagttagttga 252  Q
    ||||| ||||||| | |||||||||||| ||||||||||| ||||| ||||||||| ||||||||  ||  | | | ||||  |    ||||||||||      
T  2475987 ttatttctgatcctaaattcgcaaagaaacaccttcaattgtcaacaaagcgccaccacctcatgcgaaaatgtcgtaacatatcacgtgagttagttct 2476086  T
Q  253 gtatgattctccaatcccctcgattttatcaacttctaccgttgttacacatacacaactttaccctcctaat 325  Q
    ||||||||| |||||||| ||  | || || ||||| |||||||||||||| |||||||||||||||||||||    
T  2476087 gtatgattcgccaatcccatccgtattttctacttcaaccgttgttacacagacacaactttaccctcctaat 2476159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 272 - 384
Target Start/End: Complemental strand, 9566432 - 9566320
Alignment:
Q  272 tcgattttatcaacttctaccgttgttacacatacacaactttaccctcctaatattcttacaatttgaggtaactttgtggacgtaatgtgctcttgcg 371  Q
    ||||||||||| |||||||| ||| ||||||| ||||||||||||||||| |||| | | | |||| || | |||| ||||||| ||| |||||||||||    
T  9566432 tcgattttatctacttctacggtttttacacagacacaactttaccctcccaatagtatcagaattagacgcaactatgtggacttaacgtgctcttgcg 9566333  T
Q  372 atggcatcttttg 384  Q
    |||||||||||||    
T  9566332 atggcatcttttg 9566320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 74 - 222
Target Start/End: Complemental strand, 755445 - 755292
Alignment:
Q  74 tcgatgtcctccctgagattctcggtaggtttcccatcaaattac-----caacttcgatgcctctgtaagnnnnnnnattctcttattgctgatccaac 168  Q
    |||||||||| |||||||||||  ||||| |||||||||||||||     || || || ||||||||||||       ||||||||||| |||||||||     
T  755445 tcgatgtcctgcctgagattctttgtaggcttcccatcaaattactcggacagctgcggtgcctctgtaagtctttcaattctcttatttctgatccaaa 755346  T
Q  169 attcgcaaagaagcaccttcaattatcaactaagcgccacaacctcatgataac 222  Q
    ||||||||| || || |||||||| ||||| ||||||||| |||||||| ||||    
T  755345 attcgcaaaaaaacatcttcaattgtcaacaaagcgccaccacctcatgttaac 755292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 355 - 435
Target Start/End: Original strand, 2635214 - 2635294
Alignment:
Q  355 cgtaatgtgctcttgcgatggcatcttttgctgcatgctaaaagctggttcttatttgttgtggaatccttccattagaaa 435  Q
    ||||| |||||||||||||||||||||| || |  |||| |||||||||||||||||  ||||||| ||||||||||||||    
T  2635214 cgtaacgtgctcttgcgatggcatctttagcggtgtgctcaaagctggttcttattttctgtggaacccttccattagaaa 2635294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 58 - 222
Target Start/End: Complemental strand, 7335100 - 7334931
Alignment:
Q  58 cttcccactcttctcttcgatgtcctccctgagattctcggtaggtttcccatcaaattac-----caacttcgatgcctctgtaagnnnnnnnattctc 152  Q
    ||||| |||||||  || |||||||| |||||||||||  ||||| ||||  | |||||||     || |||||||| |||||||||       |||||     
T  7335100 cttcctactcttccgtttgatgtcctgcctgagattctgtgtaggcttccggtgaaattactcgtacagcttcgatgtctctgtaagttctttaattctg 7335001  T
Q  153 ttattgctgatccaacattcgcaaagaagcaccttcaattatcaactaagcgccacaacctcatgataac 222  Q
    ||||  ||||||||| |||||||||||||||||||||||| ||||| ||||||||| |||||||| ||||    
T  7335000 ttatctctgatccaaaattcgcaaagaagcaccttcaattgtcaacaaagcgccaccacctcatggtaac 7334931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 58 - 222
Target Start/End: Complemental strand, 9566651 - 9566482
Alignment:
Q  58 cttcccactcttctcttcgatgtcctccctgagattctcggtaggtttcccatcaaattac-----caacttcgatgcctctgtaagnnnnnnnattctc 152  Q
    ||||| ||||||| |||||||||| | |||||||||||  ||||| ||||||| |||||||     || ||||| |||||||| |||       ||||||    
T  9566651 cttcctactcttcccttcgatgtcttgcctgagattctttgtaggcttcccatgaaattactcggacagcttcggtgcctctgcaagtccttcaattctc 9566552  T
Q  153 ttattgctgatccaacattcgcaaagaagcaccttcaattatcaactaagcgccacaacctcatgataac 222  Q
    ||||| ||||||||| ||||||||| || || |||||||| ||||| ||||||||  |||||||| ||||    
T  9566551 ttatttctgatccaaaattcgcaaaaaaacatcttcaattgtcaacaaagcgccatcacctcatgttaac 9566482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 257 - 335
Target Start/End: Complemental strand, 2659752 - 2659674
Alignment:
Q  257 gattctccaatcccctcgattttatcaacttctaccgttgttacacatacacaactttaccctcctaatattcttacaa 335  Q
    |||||||||||||| || ||||| || |||||||||||||||||||| ||||||||||||  |||||||| ||| ||||    
T  2659752 gattctccaatcccttcaattttctctacttctaccgttgttacacaaacacaactttacattcctaatactctcacaa 2659674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 253 - 325
Target Start/End: Original strand, 2630771 - 2630843
Alignment:
Q  253 gtatgattctccaatcccctcgattttatcaacttctaccgttgttacacatacacaactttaccctcctaat 325  Q
    |||||||||||||||||| ||| |||| || ||||| ||| ||||| |||| |||||||||||||||||||||    
T  2630771 gtatgattctccaatcccttcgcttttttctacttcaaccattgttgcacaaacacaactttaccctcctaat 2630843  T

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Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 58 - 322
Target Start/End: Complemental strand, 7443823 - 7443554
Alignment:
Q  58 cttcccactcttctcttcgatgtcctccctgagattctcggtaggtttcccatcaaattac-----caacttcgatgcctctgtaagnnnnnnnattctc 152  Q
    ||||||||||||| ||||||| ||||||||||||||||| | ||| ||||  | |||||||     |||||||| ||||||||||||       |||||     
T  7443823 cttcccactcttcccttcgatctcctccctgagattctctgcaggcttcctgtgaaattactcatacaacttcggtgcctctgtaagttcttcaattctt 7443724  T
Q  153 ttattgctgatccaacattcgcaaagaagcaccttcaattatcaactaagcgccacaacctcatgataacctcttggaacaacttggctgagttagttga 252  Q
    | ||| ||||||| |  ||||| ||||||||| ||||||| ||| | ||||  |||  ||||||| |||||||| ||||||||     ||| || |||      
T  7443723 taatttctgatcccaatttcgccaagaagcactttcaattttcagccaagcatcaccgcctcatggtaacctctaggaacaacagacatgattttgtttt 7443624  T
Q  253 gtatgattctccaatcccctcgattttatcaacttctaccgttgttacacatacacaactttaccctcct 322  Q
      |||||||||||||||| ||| | || || ||||||||   ||||||||| ||||||||| ||||||||    
T  7443623 acatgattctccaatcccatcggtgttttctacttctacgtctgttacacaaacacaacttgaccctcct 7443554  T

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Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 58 - 214
Target Start/End: Complemental strand, 7325226 - 7325065
Alignment:
Q  58 cttcccactcttctcttcgatgtcctccctgagattctcggtaggtttcccatcaaattac-----caacttcgatgcctctgtaagnnnnnnnattctc 152  Q
    ||||| |||||||  ||||||||| | |||||||||||| | ||| ||||  | |||||||     || ||||| ||||||||||||       |||||     
T  7325226 cttccaactcttcctttcgatgtcttacctgagattctctgcaggcttcctgtgaaattactcatacagcttcggtgcctctgtaagttcttcaattctt 7325127  T
Q  153 ttattgctgatccaacattcgcaaagaagcaccttcaattatcaactaagcgccacaacctc 214  Q
    | ||| ||||||| || ||||||||||| || |||||||||||||||||||||||| |||||    
T  7325126 taatttctgatcccactttcgcaaagaaacatcttcaattatcaactaagcgccaccacctc 7325065  T

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Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 256 - 326
Target Start/End: Complemental strand, 755246 - 755176
Alignment:
Q  256 tgattctccaatcccctcgattttatcaacttctaccgttgttacacatacacaactttaccctcctaata 326  Q
    |||||| |||||||| || ||||| || |||||||| ||| ||||||| ||||||||||||||||| ||||    
T  755246 tgattccccaatcccatccattttttctacttctactgtttttacacagacacaactttaccctcccaata 755176  T

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Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 403 - 464
Target Start/End: Original strand, 2501751 - 2501812
Alignment:
Q  403 ttcttatttgttgtggaatccttccattagaaagtatacgttacttcctcctttggagaatc 464  Q
    ||||||||| |||||||| |||||||||| ||||| || |||| | ||||||||||||||||    
T  2501751 ttcttatttcttgtggaacccttccattacaaagtttaagttattgcctcctttggagaatc 2501812  T

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Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 36 - 80
Target Start/End: Original strand, 2634861 - 2634905
Alignment:
Q  36 aaccataacatctccgccgccacttcccactcttctcttcgatgt 80  Q
    ||||||||||||||||||||||||||| |||||||  ||||||||    
T  2634861 aaccataacatctccgccgccacttccgactcttccgttcgatgt 2634905  T

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Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 323
Target Start/End: Complemental strand, 2644972 - 2644902
Alignment:
Q  253 gtatgattctccaatcccctcgattttatcaacttctaccgttgttacacatacacaactttaccctccta 323  Q
    ||||||||| |||||||| ||   ||| || ||||||||| |||||||||| ||||||||||||| |||||    
T  2644972 gtatgattccccaatcccttcacctttttctacttctaccattgttacacaaacacaactttaccttccta 2644902  T

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Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 457
Target Start/End: Complemental strand, 2659643 - 2659549
Alignment:
Q  363 gctcttgcgatggcatcttttgctgcatgctaaaagctggttcttatttgttgtggaatccttccattagaaagtatacgttacttcctcctttg 457  Q
    |||||||||||||||| |||||  | | ||| ||   |||||||||||| || ||||| |||||||||||||||| || |||| | |||||||||    
T  2659643 gctcttgcgatggcatattttgtggtaagctcaataatggttcttatttcttatggaacccttccattagaaagtttaagttattgcctcctttg 2659549  T

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Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 362 - 432
Target Start/End: Complemental strand, 7324932 - 7324862
Alignment:
Q  362 tgctcttgcgatggcatcttttgctgcatgctaaaagctggttcttatttgttgtggaatccttccattag 432  Q
    |||||||| |||||||| ||||   ||||||| |||| |||||||||||  |||||||| |||||||||||    
T  7324932 tgctcttgtgatggcatttttttgggcatgctcaaagttggttcttattatttgtggaacccttccattag 7324862  T

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Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 464
Target Start/End: Original strand, 2630909 - 2630970
Alignment:
Q  403 ttcttatttgttgtggaatccttccattagaaagtatacgttacttcctcctttggagaatc 464  Q
    ||||||||| |||||||| |||||||||||||||| || |||| | ||||| ||||| ||||    
T  2630909 ttcttatttcttgtggaacccttccattagaaagtttaagttattgcctccattggaaaatc 2630970  T

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Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 403 - 459
Target Start/End: Complemental strand, 2644819 - 2644763
Alignment:
Q  403 ttcttatttgttgtggaatccttccattagaaagtatacgttacttcctcctttgga 459  Q
    ||||||||| |||||||| |||||| ||||||||| || |||| | |||||||||||    
T  2644819 ttcttatttcttgtggaacccttccgttagaaagtttaagttattgcctcctttgga 2644763  T

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