View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20442_low_12 (Length: 248)
Name: NF20442_low_12
Description: NF20442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20442_low_12 |
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| [»] chr7 (2 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 6 - 248
Target Start/End: Original strand, 7445181 - 7445423
Alignment:
| Q |
6 |
agattatactctatattttccgctattcaacttccaccattccaaggcacaaaaggacatacgaccattatcgttaggcttgtaagttggctcattcaaa |
105 |
Q |
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| T |
7445181 |
agataatactttatattttccgctattcaacttccaccattccaaagcacaaaaggacatatgaccattattgttaggcttgtaagttggctcattcaaa |
7445280 |
T |
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| Q |
106 |
tactcttgaacttcagattttagagcaggaattgcttgttgttcttggacataattcattaactttgacctccctgtgggccttgttggctccaatgtca |
205 |
Q |
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| T |
7445281 |
tactcttgaacttcagattttacagcaggaattgcttgttgttcttggacataattcattaactttgaccaccttgtgggtcttgttggctccaatgtca |
7445380 |
T |
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| Q |
206 |
gcccattttgatcagcactagttctactagagccttcttctct |
248 |
Q |
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| T |
7445381 |
gcccattttgaccagcactagttctactagagccttcttctct |
7445423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 11 - 243
Target Start/End: Original strand, 8112512 - 8112744
Alignment:
| Q |
11 |
atactctatattttccgctattcaacttccaccattccaaggcacaaaaggacatacgaccattatcgttaggcttgtaagttggctcattcaaatactc |
110 |
Q |
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| T |
8112512 |
atactctatattttccgctattcaacttccgccattccaatgcacaaaaggacatatgaccattatcattagacttgtaagttggctccttcagatactc |
8112611 |
T |
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| Q |
111 |
ttgaacttcagattttagagcaggaattgcttgttgttcttggacataattcattaactttgacctccctgtgggccttgttggctccaatgtcagccca |
210 |
Q |
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| T |
8112612 |
ttcaacttcagattttacagcatgaattgcttgttgttctttgacataattcacttgttgtgaccaccctgagtctcttgttggcttcaatgtcaacccg |
8112711 |
T |
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| Q |
211 |
ttttgatcagcactagttctactagagccttct |
243 |
Q |
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| T |
8112712 |
ttttaatcagcagtagttctactagagccttct |
8112744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 6 - 246
Target Start/End: Complemental strand, 49377158 - 49376918
Alignment:
| Q |
6 |
agattatactctatattttccgctattcaacttccaccattccaaggcacaaaaggacatacgaccattatcgttaggcttgtaagttggctcattcaaa |
105 |
Q |
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|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |
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| T |
49377158 |
agataatactttatattttccgctattcaacttccaccattccaaggcacaaaaggacatattaccattattgttaggcttgtaagttggctcattcaaa |
49377059 |
T |
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| Q |
106 |
tactcttgaacttcagattttagagcaggaattgcttgttgttcttggacataattcattaactttgacctccctgtgggccttgttggctccaatgtca |
205 |
Q |
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| T |
49377058 |
tactcttgaacttcagattttacagcaggaattgcttgttgttcttggacataattcattaactttgaccaccctgtgggtcttgttggctccaatgtca |
49376959 |
T |
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| Q |
206 |
gcccattttgatcagcactagttctactagagccttcttct |
246 |
Q |
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| T |
49376958 |
acccattttgatcagcactagttctaccagagccttcttct |
49376918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 55 - 248
Target Start/End: Complemental strand, 3804319 - 3804126
Alignment:
| Q |
55 |
caaaaggacatacgaccattatcgttaggcttgtaagttggctcattcaaatactcttgaacttcagattttagagcaggaattgcttgttgttcttgga |
154 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
3804319 |
caaaaggacatatgaccattatcgttaggcttgtaagttggctcattcaaatactcttgaacttcagattttacagcaggaattgcttgttgttcttgga |
3804220 |
T |
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| Q |
155 |
cataattcattaactttgacctccctgtgggccttgttggctccaatgtcagcccattttgatcagcactagttctactagagccttcttctct |
248 |
Q |
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| T |
3804219 |
cataattcattaactttgaccaccccgtgggtcttgttggctctaatgtcaacccattttgatcagcactagttctactagagccttcttctct |
3804126 |
T |
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