View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20442_low_14 (Length: 237)
Name: NF20442_low_14
Description: NF20442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20442_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 14 - 111
Target Start/End: Original strand, 27425277 - 27425374
Alignment:
| Q |
14 |
aatatagctcaaaacttctttccggtgctacatcttcttatattgatatcatgcttccaagcactatatctttgaacatcatcacacggtctgtcatt |
111 |
Q |
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| T |
27425277 |
aatatagctccaaacttctttccagtgctacatcttcttatattgatatcatgcttccaggaactatatctttgaacatcatcacacgacctgtcatt |
27425374 |
T |
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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 177 - 217
Target Start/End: Original strand, 27425440 - 27425480
Alignment:
| Q |
177 |
ggttcttgaaacaataaaatactaattaagatatataaaga |
217 |
Q |
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| T |
27425440 |
ggttcttgaaacaataaaatactaattaagatatataaaga |
27425480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 111
Target Start/End: Original strand, 29180133 - 29180168
Alignment:
| Q |
76 |
actatatctttgaacatcatcacacggtctgtcatt |
111 |
Q |
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| T |
29180133 |
actatatctttgaacatcttcacacggtctgtcatt |
29180168 |
T |
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