View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20442_low_3 (Length: 438)
Name: NF20442_low_3
Description: NF20442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20442_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 30 - 420
Target Start/End: Original strand, 9384530 - 9384920
Alignment:
| Q |
30 |
aatgaccaataatataaatctaaaacatcaatggtcacaaagtattgcatcaaaggtccaataatataattctaaaacatgaagctctcattcaaacatg |
129 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
9384530 |
aatgaccaataatataattctaaaacatcaatggtcacaaagtattgcatcaaaggtccaataatataattctaaaacatgaagctctcgttcaaacatg |
9384629 |
T |
|
| Q |
130 |
gattgattttcactacaagatcattctctcatttacaaaaggacattaatttttactccacctatgttagcctaatgagctaacatattcaaacacaaca |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
9384630 |
gattgattttcactacaagatcattctctcatttacaaaaggacattaatttttactccacctatgttagcctaatgagttaacatattcaaacacaaca |
9384729 |
T |
|
| Q |
230 |
ctctattttttaccaaacatctaaatatgcaatctaatccaccttctaaactatcaacattaacattcaatgtctctaacaatctcaatgccctttgacc |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9384730 |
ctctattttttaccaaacatctaaatatgcaatctaatccaccttctaaactatcaacattaacattcaatgtctctaacaatctcaatgccctttgacc |
9384829 |
T |
|
| Q |
330 |
ttcactattagaatgatcactatttttatcttttccaataagagaacacaaagcattgtttagatcctcaacatcatttttgttcttccct |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
9384830 |
ttcactattagaatgatcactatttttatcttttccaataagagaacacaaagcattgtttagatcctcaacctcatttttgttcttccct |
9384920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 114 - 420
Target Start/End: Original strand, 31947700 - 31948006
Alignment:
| Q |
114 |
ctctcattcaaacatggattgattttcactacaagatcattctctcatttacaaaaggacattaatttttactccacctatgttagcctaatgagctaac |
213 |
Q |
| |
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|||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
31947700 |
ctctcattcaaacatggattgaattttactacaagatcattctctcatttacaaaaggacattaatttttactctacctatgttagcctaatgagctaac |
31947799 |
T |
|
| Q |
214 |
atattcaaacacaacactctattttttaccaaacatctaaatatgcaatctaatccaccttctaaactatcaacattaacattcaatgtctctaacaatc |
313 |
Q |
| |
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||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
31947800 |
atatttaaacacaacactctattttttaccaaacagctaaatatgcaatctaatctaccttctaaactatcaacattaacattcaatgtctctgacaatc |
31947899 |
T |
|
| Q |
314 |
tcaatgccctttgaccttcactattagaatgatcactatttttatcttttccaataagagaacacaaagcattgtttagatcctcaacatcatttttgtt |
413 |
Q |
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| T |
31947900 |
ttaatgccctttgaccttcactattagaataatcactatttttatcttttccaataagagaacacaaagcattgtttagatcctcaacctcatttttgtt |
31947999 |
T |
|
| Q |
414 |
cttccct |
420 |
Q |
| |
|
||||||| |
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|
| T |
31948000 |
cttccct |
31948006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 31947642 - 31947683
Alignment:
| Q |
30 |
aatgaccaataatataaatctaaaacatcaatggtcacaaag |
71 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||||||||| |
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|
| T |
31947642 |
aatgaccaataatataattctaagacatcaatggtcacaaag |
31947683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 229 - 310
Target Start/End: Complemental strand, 31455655 - 31455574
Alignment:
| Q |
229 |
actctattttttaccaaacatctaaatatgcaatctaatccaccttctaaactatcaacattaacattcaatgtctctaaca |
310 |
Q |
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||||||||| ||| ||||||||| | |||||||| ||||||||||| | | | |||||||||||||||||||||||||| |
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| T |
31455655 |
actctatttcgtactaaacatctataaatgcaatccaatccaccttcaagtccacaaacattaacattcaatgtctctaaca |
31455574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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