View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20442_low_7 (Length: 288)
Name: NF20442_low_7
Description: NF20442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20442_low_7 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 16 - 275
Target Start/End: Original strand, 31381246 - 31381508
Alignment:
| Q |
16 |
atgaatgcgggaatgaagagaatctccaattgtaacgaatttgaatcttgtcgtcaaatagacattaaaaacctggaagtcgtggtccaaattcagcatg |
115 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||||| |||||||||| |||| |||||||||||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
31381246 |
atgaatgcgggaatgtagagaatcttcaattgtaatgaatttgaatattgttgtcaaatagacattaaaaaccttgacgtcgtggtccaaattcagcatg |
31381345 |
T |
|
| Q |
116 |
catataattttagattacataattgtgaattgtgatgcattaaacaataatgttgtggattcaatttcttatattaacaagctttgaacaataatgttgc |
215 |
Q |
| |
|
|||||| |||||| | ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31381346 |
catatatttttagttcacataattgtgaattgtgatgtcttaaacaataatgttgtgcattcaatttcttatattaacaagctttgaacaataatgttgc |
31381445 |
T |
|
| Q |
216 |
agtgccaatgagaaaagactgataatagatattgcaaagacaaa---aaatatgaacatgttg |
275 |
Q |
| |
|
||||||||||| |||||| |||||||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
31381446 |
agtgccaatgacaaaagattgataatatatattgcaaagacaaaaagaaatatgaacatgttg |
31381508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 261
Target Start/End: Original strand, 31996978 - 31997040
Alignment:
| Q |
199 |
ttgaacaataatgttgcagtgccaatgagaaaagactgataatagatattgcaaagacaaaaa |
261 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||| |||| ||| | |||| ||||||||||| |
|
|
| T |
31996978 |
ttgaacaataatgttgcagtggcaatgataaaagattgatgatatacattgtaaagacaaaaa |
31997040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University