View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20442_low_8 (Length: 284)
Name: NF20442_low_8
Description: NF20442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20442_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 10 - 271
Target Start/End: Complemental strand, 36684535 - 36684274
Alignment:
| Q |
10 |
aatatggttagaagaactccgggacacaaccgactgttttgctatagacaacgccattggggtgggaaagatgggaatgatgtaccagggaaatctacca |
109 |
Q |
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| T |
36684535 |
aatatggttagaagaactccgggacacaaccgactgttttgctatagacaacgccattggggtgggaaagatgggaatgatgtatcagggaaatctacca |
36684436 |
T |
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| Q |
110 |
aatggtcagttactagccgttaagagactatctaactatcgtctttttgaaaggcagttccttttagaaacaactattatgagtaggtacaggcataaaa |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
36684435 |
aatggtcagttactagccgttaagagactatctaactatcgtctttttgaaaggcagttccttttagaaacaactattatgagtaggtacagacataaaa |
36684336 |
T |
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| Q |
210 |
atatagttcccatgcttggattctgcattgaaggaaaggaaaggcttttggcatatgaatac |
271 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36684335 |
atatagttcccatgcttggattctgcattgaaggaaaggaaaggcttttggcatatgaatac |
36684274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 10 - 271
Target Start/End: Complemental strand, 36676862 - 36676601
Alignment:
| Q |
10 |
aatatggttagaagaactccgggacacaaccgactgttttgctatagacaacgccattggggtgggaaagatgggaatgatgtaccagggaaatctacca |
109 |
Q |
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| T |
36676862 |
aatatggttggaagaactgcgtgacgcaaccgattgttttgctgtggacaatgccattggggtaggaaagatgggaatgatgtaccaaggatttctgcct |
36676763 |
T |
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| Q |
110 |
aatggtcagttactagccgttaagagactatctaactatcgtctttttgaaaggcagttccttttagaaacaactattatgagtaggtacaggcataaaa |
209 |
Q |
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| T |
36676762 |
aatggtcaattactagctgttaagagactattcgactctcatttgtttaaaaggcagatccttttagaaacaacgattatgagtaggtacagacacaaaa |
36676663 |
T |
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| Q |
210 |
atatagttcccatgcttggattctgcattgaaggaaaggaaaggcttttggcatatgaatac |
271 |
Q |
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||||||||||||||||||| |||| |||||||||||||||| | |||||||||||| |||| |
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| T |
36676662 |
atatagttcccatgcttgggttctccattgaaggaaaggaacaggttttggcatatgcatac |
36676601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 10 - 271
Target Start/End: Complemental strand, 36674107 - 36673846
Alignment:
| Q |
10 |
aatatggttagaagaactccgggacacaaccgactgttttgctatagacaacgccattggggtgggaaagatgggaatgatgtaccagggaaatctacca |
109 |
Q |
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||||||||| || ||||| | ||| |||| || ||||| ||| | ||||| ||||||||||| ||||||||||||||||||||||| ||| ||| || |
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| T |
36674107 |
aatatggttggatgaactgtgtgacgcaactgattgtttcgctgtcgacaatgccattggggtaggaaagatgggaatgatgtaccaaggatttcttcct |
36674008 |
T |
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| Q |
110 |
aatggtcagttactagccgttaagagactatctaactatcgtctttttgaaaggcagttccttttagaaacaactattatgagtaggtacaggcataaaa |
209 |
Q |
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|||||||||||||| || |||||||| ||| | ||| ||| || ||| |||||||||||||||| |||||||| ||| || ||| |||||| || |||| |
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| T |
36674007 |
aatggtcagttactggctattaagagaatatttgactctcggctatttaaaaggcagttccttttggaaacaacgattttgtgtaagtacagacaaaaaa |
36673908 |
T |
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| Q |
210 |
atatagttcccatgcttggattctgcattgaaggaaaggaaaggcttttggcatatgaatac |
271 |
Q |
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||||||||||| ||||||| ||||||||| ||||||||||| | |||| ||||||| |||| |
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| T |
36673907 |
atatagttcccctgcttgggttctgcattaaaggaaaggaacaggttttagcatatgcatac |
36673846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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