View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20443_high_18 (Length: 227)
Name: NF20443_high_18
Description: NF20443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20443_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 16 - 206
Target Start/End: Original strand, 7919686 - 7919876
Alignment:
| Q |
16 |
attttggcatgtggtaccattcctctcatgaaataaatctgattacatgagttttatgaaagacgtagatctatgtatacaatttcctaaatgcttcacc |
115 |
Q |
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| T |
7919686 |
attttggcatgtggtaccattcctctcatgaaataaatctgattacatgagttttatgaaagacgtagatctatgtatacaatttcctaaatgcttcacc |
7919785 |
T |
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| Q |
116 |
aattctcaagatccttgtggatgagaaaacaaagttgttttagtcactatgatgtgttgttagagaagaggagaaaagttaaaaattcaat |
206 |
Q |
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| T |
7919786 |
aattctcaagatccttgtggatcagaaaacaaagttgttttagtcactatgatgtgttgttagagaagaggagaaaagttaaaaattcaat |
7919876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 16 - 206
Target Start/End: Original strand, 43276613 - 43276803
Alignment:
| Q |
16 |
attttggcatgtggtaccattcctctcatgaaataaatctgattacatgagttttatgaaagacgtagatctatgtatacaatttcctaaatgcttcacc |
115 |
Q |
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| T |
43276613 |
attttggcatgtggtaccattcctctcatgaaataaatctgattacataagttttatgaaagacgtagatctatgtatacaatttcctaaatgcttcacc |
43276712 |
T |
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| Q |
116 |
aattctcaagatccttgtggatgagaaaacaaagttgttttagtcactatgatgtgttgttagagaagaggagaaaagttaaaaattcaat |
206 |
Q |
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| T |
43276713 |
aattctcaagatccttgtggatcagaaaacaaagttgttttagtcactatgatgtgttgttagagaagaggagaaaagttaaaaattcaat |
43276803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 62 - 193
Target Start/End: Original strand, 17958824 - 17958955
Alignment:
| Q |
62 |
atgagttttatgaaagacgtagatctatgtatacaatttcctaaatgcttcaccaattctcaagatccttgtggatgagaaaacaaagttgttttagtca |
161 |
Q |
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|||| |||||||||| | |||||||||||||| | ||||||||||| | |||||||||||||| || ||||||| |||||||||| | ||||| ||||| |
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| T |
17958824 |
atgatttttatgaaaagcatagatctatgtatagagtttcctaaatgatccaccaattctcaagttcattgtggaggagaaaacaatgctgtttcagtca |
17958923 |
T |
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| Q |
162 |
ctatgatgtgttgttagagaagaggagaaaag |
193 |
Q |
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| T |
17958924 |
ttatggtgtgttgttagcgaagaggagcaaag |
17958955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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