View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20443_high_2 (Length: 473)
Name: NF20443_high_2
Description: NF20443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20443_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 16 - 459
Target Start/End: Original strand, 54101249 - 54101691
Alignment:
| Q |
16 |
aagaaacacatcactggtattgattatcagttaaacacctcttatactgcagggttgtgagaatactactcccaacatccacaaagtagtgacctctcaa |
115 |
Q |
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| T |
54101249 |
aagaaacacatcactggtattgattatcagttaaacacctcttatactgcagtgttgtgagaatactactcc-aacatccacaaagtagtgacctctcaa |
54101347 |
T |
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| Q |
116 |
gtttataatggtaaagcttgacaaataacaaactacaagctctacacctctgctcccttcccaaaagtccccctccttcctcaagagtccaagacttaca |
215 |
Q |
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| T |
54101348 |
gtttataatggtaaagcttgacaaataacaaactacaagctctacacctctgctcccttaccaaaagtccccctccttcctcaagagtccaagacttaca |
54101447 |
T |
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| Q |
216 |
cctctgcctcctccattacactcccaactccgcaggtttatttggacataccataacatcaaaaggcccatcttgtctgcgcccaaccttgttcctgatt |
315 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54101448 |
cctctgcctcctccattacattcccaactccgcaggtttatttggacataccataacatcaaaaggcccatcttgtctgcgcccaaccttgttcctgatt |
54101547 |
T |
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| Q |
316 |
cttttgtgttaacaagaatattgtactacatcaaccttgaatattgtgcttattgatttgtactctttctatttccttttgctgttttttgatttgaaat |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
54101548 |
cttttgtgttaacaagaatattgtactacatcaaccttgaatattgtgcttattgatttgtactctttctatttccttttgctgctttttgatttgaaat |
54101647 |
T |
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| Q |
416 |
gttgtacttgagtcagtgtttaaattgagaacttttgacgtttg |
459 |
Q |
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| T |
54101648 |
gttgtacttgagtcagtgtttaaattgagaacttttgacgtttg |
54101691 |
T |
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