View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20443_high_4 (Length: 427)
Name: NF20443_high_4
Description: NF20443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20443_high_4 |
 | |
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| [»] scaffold0002 (2 HSPs) |
| | |
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| [»] scaffold1779 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 398; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 15 - 412
Target Start/End: Original strand, 18342587 - 18342984
Alignment:
| Q |
15 |
atttaggactctatttcacttctattcaaatatatattcaaatagatttccttcctattcattccagtcctaaataatatatctatatcacgatctcgta |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18342587 |
atttaggactctatttcacttctattcaaatatatattcaaatagatttccttcctattcattccagtcctaaataatatatctatatcacgatctcgta |
18342686 |
T |
|
| Q |
115 |
ttataatacctcgggtgctaatgaaactattttagtgaaatttaactgtctcaattctcgggctattgcggaaaaaattcgagttccttttggatttcct |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18342687 |
ttataatacctcgggtgctaatgaaactattttagtgaaatttaactgtctcaattctcgggctattgcggaaaaaattcgagttccttttggatttcct |
18342786 |
T |
|
| Q |
215 |
tctttatcaatgagaaccgccgcattatcatcatactttattattataccattactacgttttagttctttacaagtacgtacaattacagccctgatca |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18342787 |
tctttatcaatgagaaccgccgcattatcatcatactttattattataccattactacgttttagttctttacaagtacgtacaattacagccctgatca |
18342886 |
T |
|
| Q |
315 |
cttcagatctttctaaagatgaatttggtactgcttttttgattacagcaacaacaatgtcaccaatataagcataccgtcgattactagctcctatg |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18342887 |
cttcagatctttctaaagatgaatttggtactgcttttttgattacagcaacaacaatgtcaccaatataagcataccgtcgattactagctcctatg |
18342984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 94 - 351
Target Start/End: Original strand, 48288606 - 48288862
Alignment:
| Q |
94 |
tatctatatcacgatctcgtattataatacctcgggtgctaatgaaactattttagtgaaatttaactgtctcaattctcgggctattgcggaaaaaat- |
192 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| || |||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||| |
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| T |
48288606 |
tatctatatcaccatctcgtattataatacctcggatgttaatgaaactatttaagtgaaatttacctgtctcaattctcgggctattgcaaaaaaaaaa |
48288705 |
T |
|
| Q |
193 |
---tcgagttccttttggatttccttctttatcaatgagaaccgccgcattatcatcatactttattattataccattactacgttttagttctttacaa |
289 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||| |
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| T |
48288706 |
aaatcgagttccttttgaatttccttctttatcaatgagaaccgccgcattatcatcatactttattattatatcatcaccacgttttagttctttacaa |
48288805 |
T |
|
| Q |
290 |
gtacgtacaattacagccctgatcacttcagatctttctaaagatgaatttggtactgcttt |
351 |
Q |
| |
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||| |||| | ||| ||||||||||||||||||||||||||||||| |||| |||| |
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|
| T |
48288806 |
----gtataatt-gactcctaatcacttcagatctttctaaagatgaatttgatactccttt |
48288862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 152 - 412
Target Start/End: Original strand, 36840497 - 36840757
Alignment:
| Q |
152 |
aaatttaactgtctcaattctcgggctattgcggaaaaaattcgagttccttttggatttccttctttatcaatgagaaccgccgcattatcatcatact |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36840497 |
aaatttaactgtctcaattctcgggctattgcggaaaaaattcgagttccttttggatttccttctttatcaatgagaaccgccgcattatcatcatact |
36840596 |
T |
|
| Q |
252 |
ttattattataccattactacgttttagttctttacaagtacgtacaattacagccctgatcacttcagatctttctaaagatgaatttggtactgcttt |
351 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36840597 |
ttattattataccattactacgttttagttctttacaagtacgtacaattacagccctgatcacttcagatctttctaaagatgaatttggtactgcttt |
36840696 |
T |
|
| Q |
352 |
tttgattacagcaacaacaatgtcaccaatataagcataccgtcgattactagctcctatg |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36840697 |
tttgattacagcaacaacaatgtcaccaatataagcataccgtcgattactagctcctatg |
36840757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 162 - 412
Target Start/End: Complemental strand, 164630 - 164380
Alignment:
| Q |
162 |
gtctcaattctcgggctattgcggaaaaaattcgagttccttttggatttccttctttatcaatgagaaccgccgcattatcatcatactttattattat |
261 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
164630 |
gtctcaattctcgggctattgcggaaaaaattctagttccttttggatttccttcattatcaatgagaaccaccgcattatcatcatactttattattat |
164531 |
T |
|
| Q |
262 |
accattactacgttttagttctttacaagtacgtacaattacagccctgatcacttcagatctttctaaagatgaatttggtactgcttttttgattaca |
361 |
Q |
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|
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |
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| T |
164530 |
accattactacgttttagttctttacaagtacgtacagttacaaccctgatcacttcagatatttctaaagatgaatttgatactgcttttttgattaca |
164431 |
T |
|
| Q |
362 |
gcaacaacaatgtcaccaatataagcataccgtcgattactagctcctatg |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
164430 |
tcaacaacaatgtcaccaatataagcataccgttgattactagctcctatg |
164380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 115 - 329
Target Start/End: Original strand, 277415 - 277629
Alignment:
| Q |
115 |
ttataatacctcgggtgctaatgaaactattttagtgaaatttaactgtctcaattctcgggctattgcggaaaaaattcgagttccttttggatttcct |
214 |
Q |
| |
|
||||||||| || || ||||||||||||||||| || ||||| || | ||||||||| ||| || ||| ||||| ||||||||||||||| || ||| |
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| T |
277415 |
ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcct |
277514 |
T |
|
| Q |
215 |
tctttatcaatgagaaccgccgcattatcatcatactttattattataccattactacgttttagttctttacaagtacgtacaattacagccctgatca |
314 |
Q |
| |
|
| || |||||| | |||||| ||||| |||||||| ||||||||||| | | ||| | ||||||||| ||||||||||||||||| | || | |
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| T |
277515 |
ttttgatcaattataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattacagctcgaatta |
277614 |
T |
|
| Q |
315 |
cttcagatctttcta |
329 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
277615 |
cttcggatctttcta |
277629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 162 - 412
Target Start/End: Original strand, 14249096 - 14249346
Alignment:
| Q |
162 |
gtctcaattctcgggctattgcggaaaaaattcgagttccttttggatttccttctttatcaatgagaaccgccgcattatcatcatactttattattat |
261 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
14249096 |
gtctcaattctcgggctattgcggaaaaaattctagttccttttggatttccttcattatcaatgagaaccaccgcattatcatcatactttattattat |
14249195 |
T |
|
| Q |
262 |
accattactacgttttagttctttacaagtacgtacaattacagccctgatcacttcagatctttctaaagatgaatttggtactgcttttttgattaca |
361 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |
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|
| T |
14249196 |
accattactacgttttagttctttacaagtacgtacagttacaaccctgatcacttcagatatttctaaagatgaatttgatactgcttttttgattaca |
14249295 |
T |
|
| Q |
362 |
gcaacaacaatgtcaccaatataagcataccgtcgattactagctcctatg |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
14249296 |
tcaacaacaatgtcaccaatataagcataccgttgattactagctcctatg |
14249346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1779 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: scaffold1779
Description:
Target: scaffold1779; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 108 - 412
Target Start/End: Complemental strand, 1037 - 733
Alignment:
| Q |
108 |
tctcgtattataatacctcgggtgctaatgaaactattttagtgaaatttaactgtctcaattctcgggctattgcggaaaaaattcgagttccttttgg |
207 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| || || ||||||||||||||||||||| |
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|
| T |
1037 |
tctcgtcttataatacctcgggagctaatgaaactattttagtgaaatttaactgtctcaattcccgggcgatcgcaccaaaaattcgagttccttttgg |
938 |
T |
|
| Q |
208 |
atttccttctttatcaatgagaaccgccgcattatcatcatactttattattataccattactacgttttagttctttacaagtacgtacaattacagcc |
307 |
Q |
| |
|
||||||||||| |||||||| ||| || ||||| |||||||| |||||| || || || ||||| ||||||||||||||||||||||||||||| |
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|
| T |
937 |
atttccttcttgatcaatgacaacggcagcattgtcatcatatcgtattatcatcccgttgtcgcgtttgagttctttacaagtacgtacaattacagct |
838 |
T |
|
| Q |
308 |
ctgatcacttcagatctttctaaagatgaatttggtactgcttttttgattacagcaacaacaatgtcaccaatataagcataccgtcgattactagctc |
407 |
Q |
| |
|
||||||||||| |||||||||| || || |||||||||||||| ||||| |||||||||| || ||||||||||| |||||| || ||||||||||||| |
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|
| T |
837 |
ctgatcacttctgatctttctagaggtgtatttggtactgcttccttgatcacagcaacaataacgtcaccaatatgagcatatcggcgattactagctc |
738 |
T |
|
| Q |
408 |
ctatg |
412 |
Q |
| |
|
||||| |
|
|
| T |
737 |
ctatg |
733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 305 - 412
Target Start/End: Original strand, 46699127 - 46699234
Alignment:
| Q |
305 |
gccctgatcacttcagatctttctaaagatgaatttggtactgcttttttgattacagcaacaacaatgtcaccaatataagcataccgtcgattactag |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46699127 |
gccctgatcacttcagatctttctaaagatgaatttggtactgctttttttattacagcaacaacaatgtcaccaatataagcataccgtcgattactag |
46699226 |
T |
|
| Q |
405 |
ctcctatg |
412 |
Q |
| |
|
|||||||| |
|
|
| T |
46699227 |
ctcctatg |
46699234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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