View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20443_high_9 (Length: 368)
Name: NF20443_high_9
Description: NF20443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20443_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 3 - 354
Target Start/End: Original strand, 43274974 - 43275322
Alignment:
| Q |
3 |
cataggaatgaacataaaataaaacgttaactttagtttgtaaaacattactctctccaatttaatctattttaggaactgaaccaaaaatatacatatt |
102 |
Q |
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| T |
43274974 |
cataggaatgaacataaaataaaacgttaactttagtttgtaaaacattactctctccaatttaatctattttaggaactgaaccaaaaatatacatatt |
43275073 |
T |
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| Q |
103 |
tattgactaaattaatgatttattcaatatataaagcnnnnnnnnncgtacatatgttaaatgatgtgaagtatcatcgactttattaataaagattgat |
202 |
Q |
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| T |
43275074 |
tattgactaaattaataatttattcaatatataaaccttttttc--cgtacatatgttaa-tgatgtgaagtatcatcgactttattaataaagattggt |
43275170 |
T |
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| Q |
203 |
cttgtttgaaatgttaggggaagcaacaagtgaattaaaactaagaaaaaagatattaacgcaatcaaattcatctttgttgcagctcatttgaggttaa |
302 |
Q |
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| T |
43275171 |
cttgtttgaaatgttaggggaagcagcaagtgaattaaaactaagaaaaaagagattaacgcaatcaaattcatctttgttgcagctcatttgaggttaa |
43275270 |
T |
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| Q |
303 |
ggtggtgaaacgaaaaactcatagcatatattagaggaatcgaccaaaaaat |
354 |
Q |
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||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
43275271 |
ggtggtgaaacgaaaaactcataccatatattggaggaatcgaccaaaaaat |
43275322 |
T |
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