View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20443_low_10 (Length: 366)
Name: NF20443_low_10
Description: NF20443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20443_low_10 |
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| [»] scaffold0470 (1 HSPs) |
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Alignment Details
Target: scaffold0470 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: scaffold0470
Description:
Target: scaffold0470; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 11 - 348
Target Start/End: Complemental strand, 1661 - 1320
Alignment:
| Q |
11 |
gagagaagaaagacacaaaagagtggagaagggatagagattttacgggttaagggaggtcgggggagtagagtcatgtacaaattaagattcatttata |
110 |
Q |
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| T |
1661 |
gagagaagagagacacaaaagagtgaagaagggatagagattttacgggttaagggaggtcgggggagtagagtcatgtacaaattaagattcatttata |
1562 |
T |
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| Q |
111 |
gattttctagttcattgatggatttgaaagagagnnnnnnnnttggggtttatagcaagtgaaagagaattactttaaagagatggaaaaacaaataaac |
210 |
Q |
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| T |
1561 |
gattttctagttcattgatggatttgaaagagagagaaaaaattggggtttatagcaagtgaaagagaattacttttaagagatggaaaaacaaataaac |
1462 |
T |
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| Q |
211 |
ttaa----agacttgtttggtacaatataatatcaagaacatcttgctatatattttttagttgaaatcaaactcattatctttccaaatcacaatagtc |
306 |
Q |
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| T |
1461 |
ttaattaaagacttgtttggtacaatataatatcaagaacatcttgctatatattttttagttgaaatcaaactcattatctttccaaatcacaatagtc |
1362 |
T |
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| Q |
307 |
acacattttgtacaacaaccacttacgttagacccaactatt |
348 |
Q |
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| T |
1361 |
acacattttgtacaacaaccatttacgttagactcaattatt |
1320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 277; Significance: 1e-155; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 11 - 348
Target Start/End: Complemental strand, 6612373 - 6612032
Alignment:
| Q |
11 |
gagagaagaaagacacaaaagagtggagaagggatagagattttacgggttaagggaggtcgggggagtagagtcatgtacaaattaagattcatttata |
110 |
Q |
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| T |
6612373 |
gagagaagagagacacaaaagagtgaagaagggatagagattttacgggttaagggaggtcgggggagtagagtcatgtacaaattaagattcatttata |
6612274 |
T |
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| Q |
111 |
gattttctagttcattgatggatttgaaagagagnnnnnnnnttggggtttatagcaagtgaaagagaattactttaaagagatggaaaaacaaataaac |
210 |
Q |
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| T |
6612273 |
gattttctagttcattgatggatttgaaagagagagaaaaaattggggtttatagcaagtgaaagagaattacttttaagagatggaaaaacaaataaac |
6612174 |
T |
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| Q |
211 |
ttaa----agacttgtttggtacaatataatatcaagaacatcttgctatatattttttagttgaaatcaaactcattatctttccaaatcacaatagtc |
306 |
Q |
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| T |
6612173 |
ttaattaaagacttgtttggtacaatataatatcaagaacatcttgctatatattttttagttgaaatcaaactcattatctttccaaatcacaatagtc |
6612074 |
T |
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| Q |
307 |
acacattttgtacaacaaccacttacgttagacccaactatt |
348 |
Q |
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| T |
6612073 |
acacattttgtacaacaaccatttacgttagactcaattatt |
6612032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 235
Target Start/End: Complemental strand, 6585571 - 6585539
Alignment:
| Q |
203 |
aaataaacttaaagacttgtttggtacaatata |
235 |
Q |
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| T |
6585571 |
aaataaacttaaagacttgtttggtacaatata |
6585539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 256
Target Start/End: Complemental strand, 6660935 - 6660905
Alignment:
| Q |
226 |
gtacaatataatatcaagaacatcttgctat |
256 |
Q |
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| T |
6660935 |
gtacaatataatatcaagaacatcttgctat |
6660905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 256
Target Start/End: Complemental strand, 6741337 - 6741307
Alignment:
| Q |
226 |
gtacaatataatatcaagaacatcttgctat |
256 |
Q |
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| T |
6741337 |
gtacaatataatatcaagaacatcttgctat |
6741307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 256
Target Start/End: Complemental strand, 6582675 - 6582647
Alignment:
| Q |
228 |
acaatataatatcaagaacatcttgctat |
256 |
Q |
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| T |
6582675 |
acaatataatatcaagaacatcttgctat |
6582647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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