View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20443_low_11 (Length: 318)
Name: NF20443_low_11
Description: NF20443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20443_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 3879463 - 3879165
Alignment:
| Q |
1 |
catacttgcgacagtacgccaatctaatattcttcaaacgtggaagatccaacgacgcttaagtcaatagactgcaactgcggagttacaaaacctgcat |
100 |
Q |
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| T |
3879463 |
catacttgcgacagtacgccaatctaatattcttcaaatgtggaagatccaacgacgctcaagtcaatagactgcaactgcggagttacaaaacctgcat |
3879364 |
T |
|
| Q |
101 |
tggcggggtgataaaatgtattaatcgtaatactcatgaattcagacatgtcattaatatcaatatctgggacagataaaatacctccaacatagagcta |
200 |
Q |
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| T |
3879363 |
tggcggggtggttaaatgtattaatcgtaatactcatgaattcagacatgtcattaatatcaatatctgggacagataaaatacctccaacatagagcta |
3879264 |
T |
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| Q |
201 |
tgagctatagcagccattgatgcagaagtgatgccctcgcagctatgaagccttagaattgtcaacattgtcatccgaaccgacttaaaagagaaaagc |
299 |
Q |
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| T |
3879263 |
tgagctatagcagccattgatgcagaagtgatgccctcgcagctatgaagccttagaattgtcaacattgtcatccgaaccgacttaaaagagaaaagc |
3879165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 3865481 - 3865188
Alignment:
| Q |
1 |
catacttgcgacagtacgccaatctaatattcttcaaacgtggaagatccaacgacgcttaagtcaatagactgcaactgcggagttacaaaacctgcat |
100 |
Q |
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||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||| || || | |||||||||||| |
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| T |
3865481 |
catacttgcgacagtacaccaatctaatattctgcaaacgtggaagatccaacgacaccgaagtcaatagactgcaattgtcaagctccaaaacctgcat |
3865382 |
T |
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| Q |
101 |
tggcggggtgataaaatgtattaatcgtaatactcatgaattcagacatgtcattaatatcaatatctgggacagataaaatacctccaacatagagcta |
200 |
Q |
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| T |
3865381 |
tggcag--ttatgtcatgtactcgtcctaatactcgggaattcagacaagtcgttaatatcaatatctggaacaaataacatacctccaacatagaactg |
3865284 |
T |
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| Q |
201 |
tgagctatagcagccattgatgcagaagtgatgccctcgcagctatgaagccttagaattgtcaacattgtcatccgaaccgacttaaaagagaaa |
296 |
Q |
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|||||||| ||||||||||| ||||||||||||||||| ||||||||||| |||||||| |||||||||| | ||||| ||||||||| ||||| |
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| T |
3865283 |
tgagctattgcagccattgacgcagaagtgatgccctcacagctatgaagtcttagaatggtcaacattgggagtcgaacagacttaaaaaagaaa |
3865188 |
T |
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