View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20443_low_14 (Length: 249)
Name: NF20443_low_14
Description: NF20443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20443_low_14 |
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| [»] scaffold0299 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 6669027 - 6669255
Alignment:
| Q |
1 |
attggtcagtccctctcnnnnnnnnccctccctatgcatgcgcatgtgtttgttgaattttcatgagcttgtgtaaccattgagtattaatattctttgt |
100 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
6669027 |
attggtcagtccctctcttttttttccctccctatgcatgcgcatgtgtttgttgaattttcatgagcttgtgtaaccattgagtattaatattct--gt |
6669124 |
T |
|
| Q |
101 |
tttttcaggtatatttcaatgcttacaaaggccactaaagaaaatgtagttgttggtttaaccaacatgtatgatcatttctttgtttctactgaaacac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6669125 |
tttttcaggtatatttcaatgcttacaaaggccactaaagaaaatgtagttgttggtttaaccaacatgtatgatcatttctttgtttctactgaaacac |
6669224 |
T |
|
| Q |
201 |
ggtactccaaggtaacaactgctcgtatgcc |
231 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
6669225 |
ggtactccaaggtaacaactgctcgtatgcc |
6669255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 26 - 231
Target Start/End: Complemental strand, 6779470 - 6779265
Alignment:
| Q |
26 |
ccctccctatgcatgcgcatgtgtttgttgaattttcatgagcttgtgtaaccattgagtattaatattctttgttttttcaggtatatttcaatgctta |
125 |
Q |
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|||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6779470 |
ccctccttatgtatgcgcatgtgtttgttgaattttcatgagcttgtgtaaccattgagtattaatattctttgttttttcaggtatatttcaatgctta |
6779371 |
T |
|
| Q |
126 |
caaaggccactaaagaaaatgtagttgttggtttaaccaacatgtatgatcatttctttgtttctactgaaacacggtactccaaggtaacaactgctcg |
225 |
Q |
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| T |
6779370 |
caaaggccactaaagaaaatgtagttgttgatttaaccaacatgtatgatcatttctttgtttctactgaaacacggtactccaaggtaacaactgctcg |
6779271 |
T |
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| Q |
226 |
tatgcc |
231 |
Q |
| |
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|||||| |
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| T |
6779270 |
tatgcc |
6779265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 106 - 231
Target Start/End: Original strand, 6680099 - 6680224
Alignment:
| Q |
106 |
caggtatatttcaatgcttacaaaggccactaaagaaaatgtagttgttggtttaaccaacatgtatgatcatttctttgtttctactgaaacacggtac |
205 |
Q |
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||||||| |||||||||| | |||||| | ||||||||| | || |||||||||||||| | |||||||||||||||||| ||||||||| | || || |
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| T |
6680099 |
caggtatctttcaatgctaaaaaaggctaacaaagaaaatattgtcgttggtttaaccaatgtatatgatcatttctttgttcctactgaaaaaaggaac |
6680198 |
T |
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| Q |
206 |
tccaaggtaacaactgctcgtatgcc |
231 |
Q |
| |
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| T |
6680199 |
tccaaggtgacagcttctcgtttgcc |
6680224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 72 - 225
Target Start/End: Original strand, 49882115 - 49882268
Alignment:
| Q |
72 |
tgtaaccattgagtattaatattctttgttttttcaggtatatttcaatgcttacaaaggccactaaagaaaatgtagttgttggtttaaccaacatgta |
171 |
Q |
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|||||||| ||| |||| ||||| ||||||| | ||||||| |||| ||| | | |||||| ||| |||||||| | ||||||||||||||||| | || |
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| T |
49882115 |
tgtaaccactgaatatttatattgtttgtttatgcaggtatctttctatgataaaaaaggctactgaagaaaatattattgttggtttaaccaacgtata |
49882214 |
T |
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| Q |
172 |
tgatcatttctttgtttctactgaaacacggtactccaaggtaacaactgctcg |
225 |
Q |
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|||||||||||||||| ||||||||| | || |||||||||| |||||| |||| |
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| T |
49882215 |
tgatcatttctttgttcctactgaaaaagggaactccaaggtgacaacttctcg |
49882268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 75 - 231
Target Start/End: Original strand, 46522494 - 46522650
Alignment:
| Q |
75 |
aaccattgagtattaatattctttgttttttcaggtatatttcaatgcttacaaaggccactaaagaaaatgtagttgttggtttaaccaacatgtatga |
174 |
Q |
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||||| ||| |||| ||| | ||||||| | ||||||| |||||||| | | |||||| ||| |||||||| | |||||||||||||||||| | ||||| |
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| T |
46522494 |
aaccactgaatatttataatgtttgtttatgcaggtatctttcaatgttaaaaaaggctactgaagaaaatatcgttgttggtttaaccaacgtatatga |
46522593 |
T |
|
| Q |
175 |
tcatttctttgtttctactgaaacacggtactccaaggtaacaactgctcgtatgcc |
231 |
Q |
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|||||| |||||| || |||| | | || |||||||||| ||| || ||||| |||| |
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| T |
46522594 |
tcatttttttgttgctgctgagaaaggggactccaaggtgacagcttctcgtttgcc |
46522650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0299 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0299
Description:
Target: scaffold0299; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 231
Target Start/End: Original strand, 13892 - 13985
Alignment:
| Q |
138 |
aagaaaatgtagttgttggtttaaccaacatgtatgatcatttctttgtttctactgaaacacggtactccaaggtaacaactgctcgtatgcc |
231 |
Q |
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| T |
13892 |
aagaaaatattgtcgttggtttaaccaacgtatatgatcatttctttcttcctacttaaaaagggaactccaaggtgacagcttctcgtttgcc |
13985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0299; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 231
Target Start/End: Original strand, 19450 - 19543
Alignment:
| Q |
138 |
aagaaaatgtagttgttggtttaaccaacatgtatgatcatttctttgtttctactgaaacacggtactccaaggtaacaactgctcgtatgcc |
231 |
Q |
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| T |
19450 |
aagaaaatattgtcgttggtttaaccaacgtatatgatcatttctttctacctacttaaaaagggaactccaaggtgacagcttctcgtttgcc |
19543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 226
Target Start/End: Original strand, 18136236 - 18136308
Alignment:
| Q |
154 |
tggtttaaccaacatgtatgatcatttctttgtttctactgaaacacggtactccaaggtaacaactgctcgt |
226 |
Q |
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||||||| ||||||| ||||||||||||||| || |||||||| | || |||||||||| ||| || ||||| |
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| T |
18136236 |
tggtttagccaacatatatgatcatttcttttttcgtactgaaaaagggaactccaaggtgacagcttctcgt |
18136308 |
T |
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