View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20443_low_16 (Length: 237)

Name: NF20443_low_16
Description: NF20443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20443_low_16
NF20443_low_16
[»] chr3 (6 HSPs)
chr3 (17-106)||(19412468-19412559)
chr3 (42-95)||(15976044-15976097)
chr3 (86-125)||(19412427-19412466)
chr3 (26-103)||(48901548-48901625)
chr3 (26-103)||(48903114-48903191)
chr3 (26-106)||(50363022-50363102)
[»] chr7 (4 HSPs)
chr7 (28-106)||(40740946-40741024)
chr7 (26-107)||(48193610-48193691)
chr7 (26-106)||(6376162-6376242)
chr7 (26-106)||(26632842-26632922)
[»] chr4 (7 HSPs)
chr4 (26-106)||(3684217-3684297)
chr4 (26-106)||(20291336-20291416)
chr4 (26-106)||(28116534-28116614)
chr4 (26-109)||(56373373-56373456)
chr4 (26-112)||(37625154-37625240)
chr4 (26-107)||(29584889-29584970)
chr4 (26-106)||(31486484-31486564)
[»] chr8 (5 HSPs)
chr8 (52-107)||(14522660-14522715)
chr8 (52-107)||(16644092-16644147)
chr8 (55-94)||(22593890-22593929)
chr8 (26-106)||(31746435-31746515)
chr8 (26-106)||(43980613-43980693)
[»] scaffold0013 (1 HSPs)
scaffold0013 (26-107)||(49131-49212)
[»] chr2 (2 HSPs)
chr2 (37-106)||(27749508-27749577)
chr2 (63-107)||(13477099-13477143)
[»] chr1 (2 HSPs)
chr1 (26-107)||(8984689-8984770)
chr1 (26-107)||(13723506-13723587)
[»] chr5 (1 HSPs)
chr5 (26-106)||(18729584-18729664)


Alignment Details
Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 106
Target Start/End: Complemental strand, 19412559 - 19412468
Alignment:
Q  17 acatctaacacaaatgatagt----ttagtaatagttatacacaaaatgtacatattaattacagtatcaatttttcttaataaatgtgaaaaa 106  Q
    |||| ||||||| ||||||||    ||||||||| ||||||||  |||||||||| |||||||| |||||||||||| ||||||||||||||||    
T  19412559 acatataacacagatgatagtttaattagtaataattatacac--aatgtacatactaattacactatcaatttttcgtaataaatgtgaaaaa 19412468  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 95
Target Start/End: Original strand, 15976044 - 15976097
Alignment:
Q  42 taatagttatacacaaaatgtacatattaattacagtatcaatttttcttaata 95  Q
    |||||| |||||||||||| ||||||| ||||||| ||||||||||||||||||    
T  15976044 taatagctatacacaaaatatacatataaattacattatcaatttttcttaata 15976097  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 125
Target Start/End: Complemental strand, 19412466 - 19412427
Alignment:
Q  86 tttcttaataaatgtgaaaaatatcaatggatgcttataa 125  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  19412466 tttcataataaatgtgaaaaatatcaatggatgcttataa 19412427  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 103
Target Start/End: Original strand, 48901548 - 48901625
Alignment:
Q  26 acaaatgatagtttagtaatagttatacacaaaatgtacatattaattacagtatcaatttttcttaataaatgtgaa 103  Q
    |||||||| | |||||||||| | | |||||||||  ||| ||||||| || || | |||||||||||||||||||||    
T  48901548 acaaatgacaatttagtaatattaacacacaaaatagacaaattaattgcactaactatttttcttaataaatgtgaa 48901625  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 103
Target Start/End: Original strand, 48903114 - 48903191
Alignment:
Q  26 acaaatgatagtttagtaatagttatacacaaaatgtacatattaattacagtatcaatttttcttaataaatgtgaa 103  Q
    |||||||| | |||||||||| | | |||||||||  ||| ||||||| || || | |||||||||||||||||||||    
T  48903114 acaaatgacaatttagtaatattaacacacaaaatagacaaattaattgcactaactatttttcttaataaatgtgaa 48903191  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 106
Target Start/End: Complemental strand, 50363102 - 50363022
Alignment:
Q  26 acaaatgatagtttagtaatagttatacacaaaatgtacatattaattacagtatcaatttttcttaataaatgtgaaaaa 106  Q
    |||||||| | ||| |||||| | ||||| ||||   |||||||||||||| |  ||||||||||||| ||||||||||||    
T  50363102 acaaatgacaatttggtaatattaatacataaaacagacatattaattacactgacaatttttcttaaaaaatgtgaaaaa 50363022  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 28 - 106
Target Start/End: Complemental strand, 40741024 - 40740946
Alignment:
Q  28 aaatgatagtttagtaatagttatacacaaaatgtacatattaattacagtatcaatttttcttaataaatgtgaaaaa 106  Q
    |||||||| ||| |||||| | | |||||||||  |||||||||||||| || ||| ||||||||| ||||||||||||    
T  40741024 aaatgataatttggtaatattaacacacaaaatagacatattaattacattaacaacttttcttaagaaatgtgaaaaa 40740946  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 107
Target Start/End: Complemental strand, 48193691 - 48193610
Alignment:
Q  26 acaaatgatagtttagtaatagttatacacaaaatgtacatattaattacagtatcaatttttcttaataaatgtgaaaaat 107  Q
    ||||| |||| ||| |||||| | | |||||||||  ||| |||||||||| || ||||||||||||| |||||||||||||    
T  48193691 acaaaggataatttggtaatattaacacacaaaatagacacattaattacactaacaatttttcttaaaaaatgtgaaaaat 48193610  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 106
Target Start/End: Original strand, 6376162 - 6376242
Alignment:
Q  26 acaaatgatagtttagtaatagttatacacaaaatgtacatattaattacagtatcaatttttcttaataaatgtgaaaaa 106  Q
    |||||||| | |||||||||| | | ||||||||   | | |||||||||| || ||||||||||||| ||||||||||||    
T  6376162 acaaatgacaatttagtaatattaacacacaaaacagagacattaattacactaacaatttttcttaagaaatgtgaaaaa 6376242  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 106
Target Start/End: Complemental strand, 26632922 - 26632842
Alignment:
Q  26 acaaatgatagtttagtaatagttatacacaaaatgtacatattaattacagtatcaatttttcttaataaatgtgaaaaa 106  Q
    ||||| |||| |||||||||| | | ||| |||||  ||| ||||| |||| || ||||||||||||| ||||||||||||    
T  26632922 acaaaagataatttagtaatattaacacataaaatagacacattaactacactaacaatttttcttaaaaaatgtgaaaaa 26632842  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 106
Target Start/End: Original strand, 3684217 - 3684297
Alignment:
Q  26 acaaatgatagtttagtaatagttatacacaaaatgtacatattaattacagtatcaatttttcttaataaatgtgaaaaa 106  Q
    |||||||||| |||| ||||| | |||||||||||  ||| ||||||||||    |||| |||||||||||||||||||||    
T  3684217 acaaatgataatttaataatattaatacacaaaatagacacattaattacaccgacaatctttcttaataaatgtgaaaaa 3684297  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 106
Target Start/End: Complemental strand, 20291416 - 20291336
Alignment:
Q  26 acaaatgatagtttagtaatagttatacacaaaatgtacatattaattacagtatcaatttttcttaataaatgtgaaaaa 106  Q
    |||||||||| |||||||||| | |  ||||||||  ||| |||||||||| || ||| ||||||||| ||||||||||||    
T  20291416 acaaatgataatttagtaatattaacccacaaaatagacacattaattacattaccaacttttcttaagaaatgtgaaaaa 20291336  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 106
Target Start/End: Original strand, 28116534 - 28116614
Alignment:
Q  26 acaaatgatagtttagtaatagttatacacaaaatgtacatattaattacagtatcaatttttcttaataaatgtgaaaaa 106  Q
    |||||||||| ||| | |||| | | |||||||||  |||||||||||||| || ||| ||||||||| ||||||||||||    
T  28116534 acaaatgataatttggcaatattaacacacaaaatagacatattaattacactaacaacttttcttaaaaaatgtgaaaaa 28116614  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 109
Target Start/End: Original strand, 56373373 - 56373456
Alignment:
Q  26 acaaatgatagtttagtaatagttatacacaaaatgtacatattaattacagtatcaatttttcttaataaatgtgaaaaatat 109  Q
    |||||||| | ||| |||||| | | |||||||||  ||| ||||||| || || ||||||||||||| |||||||||||||||    
T  56373373 acaaatgacaatttggtaatattaacacacaaaataaacacattaattgcactaacaatttttcttaagaaatgtgaaaaatat 56373456  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 112
Target Start/End: Original strand, 37625154 - 37625240
Alignment:
Q  26 acaaatgatagtttagtaatagttatacacaaaatgtacatattaattacagtatcaatttttcttaataaatgtgaaaaatatcaa 112  Q
    |||||||||| |||||||||| | | |||||||||  ||| |||||||| | |  ||| ||||||||| |||||||||||| |||||    
T  37625154 acaaatgataatttagtaatattaacacacaaaataaacacattaattatactgacaacttttcttaagaaatgtgaaaaaaatcaa 37625240  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 107
Target Start/End: Complemental strand, 29584970 - 29584889
Alignment:
Q  26 acaaatgatagtttagtaatagttatacacaaaatgtacatattaattacagtatcaatttttcttaataaatgtgaaaaat 107  Q
    |||||||| | ||| |||||| | | ||||| |||  ||| |||||||||| || ||||||||||||| |||||||||||||    
T  29584970 acaaatgacaatttggtaatattaacacacagaatagacacattaattacactaacaatttttcttaagaaatgtgaaaaat 29584889  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 106
Target Start/End: Complemental strand, 31486564 - 31486484
Alignment:
Q  26 acaaatgatagtttagtaatagttatacacaaaatgtacatattaattacagtatcaatttttcttaataaatgtgaaaaa 106  Q
    ||||| |||| |||||||||| | | |||||||||  ||| ||||||| || || ||| ||||||||| ||||||||||||    
T  31486564 acaaaggataatttagtaatattaacacacaaaatagacacattaattgcactaacaacttttcttaagaaatgtgaaaaa 31486484  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 107
Target Start/End: Original strand, 14522660 - 14522715
Alignment:
Q  52 acacaaaatgtacatattaattacagtatcaatttttcttaataaatgtgaaaaat 107  Q
    ||||||||  |||| |||||||||| || ||||||||||||| |||||||||||||    
T  14522660 acacaaaacatacacattaattacactaacaatttttcttaagaaatgtgaaaaat 14522715  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 107
Target Start/End: Original strand, 16644092 - 16644147
Alignment:
Q  52 acacaaaatgtacatattaattacagtatcaatttttcttaataaatgtgaaaaat 107  Q
    ||||||||| |||| |||||||||| || ||| ||||||||| |||||||||||||    
T  16644092 acacaaaatatacacattaattacactaacaacttttcttaagaaatgtgaaaaat 16644147  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 94
Target Start/End: Complemental strand, 22593929 - 22593890
Alignment:
Q  55 caaaatgtacatattaattacagtatcaatttttcttaat 94  Q
    ||||||||| |||||||||||| |||||||||||||||||    
T  22593929 caaaatgtatatattaattacactatcaatttttcttaat 22593890  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 106
Target Start/End: Original strand, 31746435 - 31746515
Alignment:
Q  26 acaaatgatagtttagtaatagttatacacaaaatgtacatattaattacagtatcaatttttcttaataaatgtgaaaaa 106  Q
    |||||||| | ||| |||||| | | |||||||||  ||| ||||||| || || ||||||||||||| ||||||||||||    
T  31746435 acaaatgacaattttgtaatattaacacacaaaatagacacattaattgcactaacaatttttcttaagaaatgtgaaaaa 31746515  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 106
Target Start/End: Original strand, 43980613 - 43980693
Alignment:
Q  26 acaaatgatagtttagtaatagttatacacaaaatgtacatattaattacagtatcaatttttcttaataaatgtgaaaaa 106  Q
    |||||||||| |||||||||| | | ||| |||||  ||| ||||| |||| || ||| ||||||||| ||||||||||||    
T  43980613 acaaatgataatttagtaatattaacacataaaatagacacattaactacactaacaacttttcttaagaaatgtgaaaaa 43980693  T

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Target: scaffold0013 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 107
Target Start/End: Complemental strand, 49212 - 49131
Alignment:
Q  26 acaaatgatagtttagtaatagttatacacaaaatgtacatattaattacagtatcaatttttcttaataaatgtgaaaaat 107  Q
    |||||||| | |||| ||||| | | ||||||| |  |||||||||||||| || ||||||||||||| |||||| ||||||    
T  49212 acaaatgacaatttaataatattaacacacaaagtagacatattaattacattaacaatttttcttaagaaatgtaaaaaat 49131  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 106
Target Start/End: Complemental strand, 27749577 - 27749508
Alignment:
Q  37 tttagtaatagttatacacaaaatgtacatattaattacagtatcaatttttcttaataaatgtgaaaaa 106  Q
    |||||||||| | ||||||||||   |||||||||||||| |  ||| ||||||||| ||||||||||||    
T  27749577 tttagtaatattaatacacaaaacagacatattaattacactgacaacttttcttaagaaatgtgaaaaa 27749508  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 107
Target Start/End: Original strand, 13477099 - 13477143
Alignment:
Q  63 acatattaattacagtatcaatttttcttaataaatgtgaaaaat 107  Q
    ||||||||||| || || ||||||||||||| |||||||||||||    
T  13477099 acatattaattgcactaacaatttttcttaaaaaatgtgaaaaat 13477143  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 107
Target Start/End: Original strand, 8984689 - 8984770
Alignment:
Q  26 acaaatgatagtttagtaatagttatacacaaaatgtacatattaattacagtatcaatttttcttaataaatgtgaaaaat 107  Q
    |||||||| | |||||||||| | | ||||||||   ||| |||||||||| || ||||||| ||||| |||||||||||||    
T  8984689 acaaatgacaatttagtaatattaacacacaaaacagacacattaattacactaacaattttccttaaaaaatgtgaaaaat 8984770  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 107
Target Start/End: Original strand, 13723506 - 13723587
Alignment:
Q  26 acaaatgatagtttagtaatagttatacacaaaatgtacatattaattacagtatcaatttttcttaataaatgtgaaaaat 107  Q
    ||||| |||| ||| |||||| | |||||||||||  ||| ||||||| || || ||| ||||||||| |||||||||||||    
T  13723506 acaaaggataatttggtaatattaatacacaaaatagacacattaattgcactaacaacttttcttaagaaatgtgaaaaat 13723587  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 106
Target Start/End: Complemental strand, 18729664 - 18729584
Alignment:
Q  26 acaaatgatagtttagtaatagttatacacaaaatgtacatattaattacagtatcaatttttcttaataaatgtgaaaaa 106  Q
    |||||||||| |||| ||||| | | |||||||||  ||| ||||||||||  |  |||||||||||| ||||||||||||    
T  18729664 acaaatgatactttaataatattaacacacaaaatagacacattaattacacaaataatttttcttaagaaatgtgaaaaa 18729584  T

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