View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20443_low_17 (Length: 235)

Name: NF20443_low_17
Description: NF20443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20443_low_17
NF20443_low_17
[»] chr7 (15 HSPs)
chr7 (25-235)||(45647705-45647916)
chr7 (128-170)||(3266786-3266828)
chr7 (118-170)||(46025710-46025764)
chr7 (118-170)||(48304047-48304101)
chr7 (118-170)||(8180213-8180267)
chr7 (118-170)||(11833430-11833484)
chr7 (118-170)||(21991074-21991128)
chr7 (118-170)||(36253342-36253396)
chr7 (118-170)||(41288368-41288422)
chr7 (102-169)||(14657560-14657629)
chr7 (133-170)||(14707971-14708008)
chr7 (128-169)||(42645068-42645109)
chr7 (133-170)||(45482464-45482501)
chr7 (133-165)||(33530161-33530193)
chr7 (128-164)||(39090485-39090521)
[»] chr3 (27 HSPs)
chr3 (133-170)||(54238699-54238736)
chr3 (118-170)||(33637806-33637860)
chr3 (118-170)||(55455274-55455328)
chr3 (128-170)||(105723-105765)
chr3 (128-170)||(31462430-31462472)
chr3 (136-170)||(38379437-38379471)
chr3 (128-170)||(40883550-40883592)
chr3 (104-170)||(3457334-3457402)
chr3 (128-169)||(48652124-48652165)
chr3 (118-170)||(2192490-2192544)
chr3 (118-170)||(11819496-11819550)
chr3 (118-170)||(13701665-13701719)
chr3 (118-170)||(30155953-30156007)
chr3 (118-170)||(32080426-32080480)
chr3 (118-170)||(36691462-36691516)
chr3 (133-172)||(38530334-38530373)
chr3 (118-170)||(55090362-55090416)
chr3 (128-166)||(2148156-2148194)
chr3 (128-170)||(4082120-4082162)
chr3 (128-166)||(7658412-7658450)
chr3 (128-170)||(20200739-20200781)
chr3 (128-170)||(20202921-20202963)
chr3 (128-170)||(25939177-25939219)
chr3 (128-170)||(39610619-39610661)
chr3 (133-170)||(41868013-41868050)
chr3 (133-170)||(51742195-51742232)
chr3 (117-170)||(3961444-3961499)
[»] chr2 (27 HSPs)
chr2 (104-169)||(31271774-31271841)
chr2 (128-170)||(7071442-7071484)
chr2 (128-170)||(32314837-32314879)
chr2 (117-170)||(44942698-44942753)
chr2 (118-170)||(3527398-3527452)
chr2 (118-170)||(13878664-13878718)
chr2 (118-170)||(14018789-14018843)
chr2 (118-170)||(17267781-17267835)
chr2 (118-170)||(18089067-18089121)
chr2 (118-170)||(20560788-20560842)
chr2 (118-170)||(25068253-25068307)
chr2 (118-170)||(28230752-28230806)
chr2 (118-170)||(29543205-29543259)
chr2 (118-170)||(33012460-33012514)
chr2 (118-170)||(35333917-35333971)
chr2 (118-170)||(38384121-38384175)
chr2 (128-170)||(3397660-3397702)
chr2 (128-170)||(4739741-4739783)
chr2 (128-170)||(12705098-12705140)
chr2 (128-170)||(13268963-13269005)
chr2 (128-170)||(13740321-13740363)
chr2 (128-170)||(15920265-15920307)
chr2 (136-170)||(17792869-17792903)
chr2 (128-170)||(28261572-28261614)
chr2 (136-170)||(31125068-31125102)
chr2 (133-166)||(15786255-15786288)
chr2 (128-169)||(31264742-31264783)
[»] scaffold0432 (1 HSPs)
scaffold0432 (118-170)||(2103-2157)
[»] chr6 (16 HSPs)
chr6 (118-170)||(12481034-12481088)
chr6 (128-170)||(4394182-4394224)
chr6 (128-170)||(29920584-29920626)
chr6 (118-168)||(31936288-31936340)
chr6 (118-170)||(19402507-19402561)
chr6 (118-170)||(23637777-23637831)
chr6 (118-170)||(23654661-23654715)
chr6 (118-170)||(30813469-30813523)
chr6 (118-169)||(4660841-4660894)
chr6 (128-170)||(6295916-6295958)
chr6 (128-170)||(6302726-6302768)
chr6 (118-169)||(12653973-12654026)
chr6 (133-170)||(2488534-2488571)
chr6 (128-165)||(5545076-5545113)
chr6 (133-170)||(8693343-8693380)
chr6 (134-170)||(14782828-14782864)
[»] chr5 (12 HSPs)
chr5 (118-170)||(11734500-11734554)
chr5 (118-170)||(39179500-39179554)
chr5 (104-170)||(3740744-3740812)
chr5 (118-170)||(17095896-17095950)
chr5 (118-170)||(17331740-17331794)
chr5 (118-170)||(23881771-23881825)
chr5 (118-170)||(34431476-34431530)
chr5 (128-170)||(2555017-2555059)
chr5 (118-165)||(37219398-37219447)
chr5 (133-170)||(7771493-7771530)
chr5 (133-165)||(8811838-8811870)
chr5 (134-170)||(17732060-17732096)
[»] chr4 (27 HSPs)
chr4 (118-170)||(393929-393983)
chr4 (118-170)||(7060726-7060780)
chr4 (118-170)||(8517114-8517168)
chr4 (128-170)||(3159374-3159416)
chr4 (128-170)||(24611465-24611507)
chr4 (128-170)||(29266571-29266613)
chr4 (134-170)||(51152527-51152563)
chr4 (118-170)||(13965955-13966009)
chr4 (118-170)||(42197965-42198019)
chr4 (118-170)||(45350725-45350779)
chr4 (118-170)||(45360204-45360258)
chr4 (128-170)||(626226-626268)
chr4 (128-170)||(6882356-6882398)
chr4 (128-170)||(24100545-24100587)
chr4 (128-170)||(24789588-24789630)
chr4 (128-170)||(24818629-24818671)
chr4 (128-170)||(25658573-25658615)
chr4 (128-170)||(28837467-28837509)
chr4 (128-170)||(31932659-31932701)
chr4 (128-170)||(38943824-38943866)
chr4 (133-170)||(3171296-3171333)
chr4 (133-170)||(8712920-8712957)
chr4 (137-170)||(23926432-23926465)
chr4 (133-170)||(27091120-27091157)
chr4 (128-169)||(31522359-31522400)
chr4 (118-170)||(32616517-32616568)
chr4 (128-168)||(56236498-56236538)
[»] chr1 (14 HSPs)
chr1 (118-170)||(12872018-12872072)
chr1 (118-170)||(4882032-4882086)
chr1 (118-170)||(25032758-25032812)
chr1 (118-170)||(44517560-44517614)
chr1 (128-170)||(2351012-2351054)
chr1 (128-170)||(13488203-13488245)
chr1 (136-170)||(15790951-15790985)
chr1 (128-170)||(26771497-26771539)
chr1 (128-170)||(33486703-33486745)
chr1 (128-170)||(33938711-33938753)
chr1 (136-170)||(45193303-45193337)
chr1 (137-170)||(14265695-14265728)
chr1 (133-170)||(25689525-25689562)
chr1 (133-170)||(27535109-27535146)
[»] chr8 (9 HSPs)
chr8 (128-170)||(4757560-4757602)
chr8 (133-170)||(31407431-31407468)
chr8 (118-170)||(1809901-1809955)
chr8 (118-170)||(24790833-24790887)
chr8 (128-170)||(9501980-9502022)
chr8 (128-170)||(28296790-28296832)
chr8 (118-168)||(2968929-2968981)
chr8 (133-170)||(30026562-30026599)
chr8 (133-165)||(10334893-10334925)
[»] scaffold0155 (1 HSPs)
scaffold0155 (118-170)||(35487-35541)
[»] scaffold0294 (1 HSPs)
scaffold0294 (128-170)||(3734-3776)


Alignment Details
Target: chr7 (Bit Score: 147; Significance: 1e-77; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 25 - 235
Target Start/End: Original strand, 45647705 - 45647916
Alignment:
Q  25 ttttaataagaaacaataacaacacattttctaacacactannnnnnn-cttgttaaattagggaaatccatacaaagaattttttgttttgttaaaata 123  Q
    |||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  45647705 ttttaataagaaacaataacaacacattttctaacacactatttttttgcttgttaaattagggaaacccatacaaagaattttttgttttgttaaaata 45647804  T
Q  124 aacgattcgttcattcaaattgataaagtacattgatacaatacaaacctatgaagccccgatatggatacgagtgcaggtatgatacgatactgatatg 223  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||  ||||||| |||||||||||||| || |    
T  45647805 aacgattcgttcattcaaattgacaaagtacattgatacaatacaaatctatgaaaccccgatatggatacaggtgcaggcatgatacgatactggtacg 45647904  T
Q  224 cggatacgtgat 235  Q
    ||||||||||||    
T  45647905 cggatacgtgat 45647916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 128 - 170
Target Start/End: Complemental strand, 3266828 - 3266786
Alignment:
Q  128 attcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    |||| ||||||||||||||||||||||||||||||||||||||    
T  3266828 attcattcattcaaattgataaagtacattgatacaatacaaa 3266786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 170
Target Start/End: Original strand, 46025710 - 46025764
Alignment:
Q  118 aaaataaacgat--tcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    ||||||||||||  || |||||||||||||||||||||||| |||||||||||||    
T  46025710 aaaataaacgatattcattcattcaaattgataaagtacatcgatacaatacaaa 46025764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 170
Target Start/End: Original strand, 48304047 - 48304101
Alignment:
Q  118 aaaataaacgat--tcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    ||||||||||||  || |||||||||||||||||||||||| |||||||||||||    
T  48304047 aaaataaacgatattcattcattcaaattgataaagtacatcgatacaatacaaa 48304101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 170
Target Start/End: Complemental strand, 8180267 - 8180213
Alignment:
Q  118 aaaataaacgat--tcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    ||||||||||||  || |||||||||||||||| |||||||| ||||||||||||    
T  8180267 aaaataaacgatattcattcattcaaattgatagagtacattcatacaatacaaa 8180213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 170
Target Start/End: Complemental strand, 11833484 - 11833430
Alignment:
Q  118 aaaataaacgat--tcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    ||||||||||||  || |||||||||||||||| ||||||| |||||||||||||    
T  11833484 aaaataaacgatattcattcattcaaattgatagagtacatcgatacaatacaaa 11833430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 170
Target Start/End: Complemental strand, 21991128 - 21991074
Alignment:
Q  118 aaaataaacgat--tcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    ||||||||||||  || |||||||||||||||| ||||||| |||||||||||||    
T  21991128 aaaataaacgatattcattcattcaaattgatagagtacatcgatacaatacaaa 21991074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 170
Target Start/End: Complemental strand, 36253396 - 36253342
Alignment:
Q  118 aaaataaacgat--tcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    ||||||||||||  || |||||||||||||||| ||||||| |||||||||||||    
T  36253396 aaaataaacgatactcattcattcaaattgatagagtacatcgatacaatacaaa 36253342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 170
Target Start/End: Complemental strand, 41288422 - 41288368
Alignment:
Q  118 aaaataaacgat--tcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    ||||||||||||  || |||||||||||||||| ||||||| |||||||||||||    
T  41288422 aaaataaacgatattctttcattcaaattgatagagtacatcgatacaatacaaa 41288368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 169
Target Start/End: Original strand, 14657560 - 14657629
Alignment:
Q  102 aattttttgttttgttaaaataaacgat--tcgttcattcaaattgataaagtacattgatacaatacaa 169  Q
    |||||||| |||||  |||||||| |||  || || |||||||||||| |||||||||||||||||||||    
T  14657560 aatttttttttttgaaaaaataaaagatattcattaattcaaattgattaagtacattgatacaatacaa 14657629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 170
Target Start/End: Complemental strand, 14708008 - 14707971
Alignment:
Q  133 ttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    |||||||||| ||||| |||||||||||||||||||||    
T  14708008 ttcattcaaaatgatagagtacattgatacaatacaaa 14707971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 169
Target Start/End: Complemental strand, 42645109 - 42645068
Alignment:
Q  128 attcgttcattcaaattgataaagtacattgatacaatacaa 169  Q
    |||| |||||||||||||||| ||||||| ||||||||||||    
T  42645109 attcattcattcaaattgatagagtacatcgatacaatacaa 42645068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 170
Target Start/End: Complemental strand, 45482501 - 45482464
Alignment:
Q  133 ttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    |||||||||||||||| ||||||| |||||||||||||    
T  45482501 ttcattcaaattgatagagtacatcgatacaatacaaa 45482464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 165
Target Start/End: Original strand, 33530161 - 33530193
Alignment:
Q  133 ttcattcaaattgataaagtacattgatacaat 165  Q
    |||||||||||||||| ||||||||||||||||    
T  33530161 ttcattcaaattgatagagtacattgatacaat 33530193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 164
Target Start/End: Complemental strand, 39090521 - 39090485
Alignment:
Q  128 attcgttcattcaaattgataaagtacattgatacaa 164  Q
    |||| |||||||||||||||||||||| |||||||||    
T  39090521 attcattcattcaaattgataaagtacgttgatacaa 39090485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 133 - 170
Target Start/End: Original strand, 54238699 - 54238736
Alignment:
Q  133 ttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    ||||||||||||||||||||||||||||||||||||||    
T  54238699 ttcattcaaattgataaagtacattgatacaatacaaa 54238736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 170
Target Start/End: Complemental strand, 33637860 - 33637806
Alignment:
Q  118 aaaataaacgat--tcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    ||||||||||||  || |||||||||||||||||||||||| |||||||||||||    
T  33637860 aaaataaacgatattcattcattcaaattgataaagtacatcgatacaatacaaa 33637806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 170
Target Start/End: Complemental strand, 55455328 - 55455274
Alignment:
Q  118 aaaataaacgat--tcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    ||||||||||||  || |||||||||||||||| |||||||||||||||||||||    
T  55455328 aaaataaacgatattcattcattcaaattgatagagtacattgatacaatacaaa 55455274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 128 - 170
Target Start/End: Original strand, 105723 - 105765
Alignment:
Q  128 attcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    |||| |||||||||||||||| |||||||||||||||||||||    
T  105723 attcattcattcaaattgatagagtacattgatacaatacaaa 105765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 128 - 170
Target Start/End: Original strand, 31462430 - 31462472
Alignment:
Q  128 attcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    |||| |||||||||||||||||||||||| |||||||||||||    
T  31462430 attcattcattcaaattgataaagtacatcgatacaatacaaa 31462472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 136 - 170
Target Start/End: Original strand, 38379437 - 38379471
Alignment:
Q  136 attcaaattgataaagtacattgatacaatacaaa 170  Q
    |||||||||||||||||||||||||||||||||||    
T  38379437 attcaaattgataaagtacattgatacaatacaaa 38379471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 128 - 170
Target Start/End: Original strand, 40883550 - 40883592
Alignment:
Q  128 attcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    |||| |||||||||||||||| |||||||||||||||||||||    
T  40883550 attcattcattcaaattgatagagtacattgatacaatacaaa 40883592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 170
Target Start/End: Complemental strand, 3457402 - 3457334
Alignment:
Q  104 ttttttgttttgttaaaataaacgat--tcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    |||||| |||| | ||||||||||||  || |||||| ||||||||| |||||||||||||||||||||    
T  3457402 tttttttttttataaaaataaacgatattcattcatttaaattgatagagtacattgatacaatacaaa 3457334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 169
Target Start/End: Original strand, 48652124 - 48652165
Alignment:
Q  128 attcgttcattcaaattgataaagtacattgatacaatacaa 169  Q
    |||| |||||||||||||||||||||||| ||||||||||||    
T  48652124 attcattcattcaaattgataaagtacatcgatacaatacaa 48652165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 170
Target Start/End: Complemental strand, 2192544 - 2192490
Alignment:
Q  118 aaaataaacgat--tcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    ||||||||||||  || |||||||||||||||| ||||||| |||||||||||||    
T  2192544 aaaataaacgatattcattcattcaaattgatagagtacatcgatacaatacaaa 2192490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 170
Target Start/End: Complemental strand, 11819550 - 11819496
Alignment:
Q  118 aaaataaacgat--tcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    ||||||||||||  || |||||||||||||||| ||||||| |||||||||||||    
T  11819550 aaaataaacgatattcattcattcaaattgatagagtacatcgatacaatacaaa 11819496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 170
Target Start/End: Original strand, 13701665 - 13701719
Alignment:
Q  118 aaaataaacgat--tcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    ||||||||||||  || |||||||||||||||| ||||||| |||||||||||||    
T  13701665 aaaataaacgatattcattcattcaaattgatagagtacatcgatacaatacaaa 13701719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 170
Target Start/End: Original strand, 30155953 - 30156007
Alignment:
Q  118 aaaataaacgat--tcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    ||||||||||||  || |||||||||||||||| ||||||| |||||||||||||    
T  30155953 aaaataaacgatactcattcattcaaattgatagagtacatcgatacaatacaaa 30156007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 170
Target Start/End: Original strand, 32080426 - 32080480
Alignment:
Q  118 aaaataaacgat--tcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    ||||||||||||  || |||||||||||||||| ||||||| |||||||||||||    
T  32080426 aaaataaacgatattctttcattcaaattgatagagtacatcgatacaatacaaa 32080480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 170
Target Start/End: Original strand, 36691462 - 36691516
Alignment:
Q  118 aaaataaacgat--tcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    ||||||||||||  || ||||||||||| |||||||||||| |||||||||||||    
T  36691462 aaaataaacgatattcattcattcaaatcgataaagtacatcgatacaatacaaa 36691516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 172
Target Start/End: Complemental strand, 38530373 - 38530334
Alignment:
Q  133 ttcattcaaattgataaagtacattgatacaatacaaacc 172  Q
    |||||||||||||||| ||||||| |||||||||||||||    
T  38530373 ttcattcaaattgatagagtacatcgatacaatacaaacc 38530334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 170
Target Start/End: Original strand, 55090362 - 55090416
Alignment:
Q  118 aaaataaacgat--tcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    ||||||||||||  || |||||||||||||||| ||||||| |||||||||||||    
T  55090362 aaaataaacgatattcattcattcaaattgatagagtacatcgatacaatacaaa 55090416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 166
Target Start/End: Complemental strand, 2148194 - 2148156
Alignment:
Q  128 attcgttcattcaaattgataaagtacattgatacaata 166  Q
    ||||||||||||||||||||| ||||| |||||||||||    
T  2148194 attcgttcattcaaattgatagagtacgttgatacaata 2148156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 170
Target Start/End: Complemental strand, 4082162 - 4082120
Alignment:
Q  128 attcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    |||| |||||||||||||||| ||||||| |||||||||||||    
T  4082162 attcattcattcaaattgatagagtacatcgatacaatacaaa 4082120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 166
Target Start/End: Complemental strand, 7658450 - 7658412
Alignment:
Q  128 attcgttcattcaaattgataaagtacattgatacaata 166  Q
    |||| |||||||||||||||| |||||||||||||||||    
T  7658450 attcattcattcaaattgatatagtacattgatacaata 7658412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 170
Target Start/End: Original strand, 20200739 - 20200781
Alignment:
Q  128 attcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    |||| |||||||||||||||| |||||||||||| ||||||||    
T  20200739 attcattcattcaaattgatagagtacattgatataatacaaa 20200781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 170
Target Start/End: Original strand, 20202921 - 20202963
Alignment:
Q  128 attcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    |||| |||||||||||||||| |||||||||||| ||||||||    
T  20202921 attcattcattcaaattgatagagtacattgatataatacaaa 20202963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 170
Target Start/End: Original strand, 25939177 - 25939219
Alignment:
Q  128 attcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    |||| |||||||||||||||||||||||| |||||||| ||||    
T  25939177 attcattcattcaaattgataaagtacatcgatacaatgcaaa 25939219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 170
Target Start/End: Complemental strand, 39610661 - 39610619
Alignment:
Q  128 attcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    |||| |||||||||||| ||| |||||||||||||||||||||    
T  39610661 attcattcattcaaattaatagagtacattgatacaatacaaa 39610619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 170
Target Start/End: Original strand, 41868013 - 41868050
Alignment:
Q  133 ttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    |||||||||||||||| ||||||| |||||||||||||    
T  41868013 ttcattcaaattgatagagtacatcgatacaatacaaa 41868050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 170
Target Start/End: Complemental strand, 51742232 - 51742195
Alignment:
Q  133 ttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    |||||||||||||||| |||| ||||||||||||||||    
T  51742232 ttcattcaaattgatagagtatattgatacaatacaaa 51742195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 170
Target Start/End: Original strand, 3961444 - 3961499
Alignment:
Q  117 taaaataaacgat--tcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    |||||||||||||  || || |||||||||||||||||| || |||||||||||||    
T  3961444 taaaataaacgatattcatttattcaaattgataaagtatatcgatacaatacaaa 3961499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 104 - 169
Target Start/End: Complemental strand, 31271841 - 31271774
Alignment:
Q  104 ttttttgttttgttaaaataaacgat--tcgttcattcaaattgataaagtacattgatacaatacaa 169  Q
    |||||| |||| || |||||||||||  ||||||||||||| |||||||||||||||| |||||||||    
T  31271841 tttttttttttttttaaataaacgatattcgttcattcaaaatgataaagtacattgacacaatacaa 31271774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 128 - 170
Target Start/End: Original strand, 7071442 - 7071484
Alignment:
Q  128 attcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    |||| |||||||||||||||| |||||||||||||||||||||    
T  7071442 attcattcattcaaattgatagagtacattgatacaatacaaa 7071484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 128 - 170
Target Start/End: Complemental strand, 32314879 - 32314837
Alignment:
Q  128 attcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    |||| |||||||||||||||||||||||| |||||||||||||    
T  32314879 attcattcattcaaattgataaagtacatcgatacaatacaaa 32314837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 170
Target Start/End: Complemental strand, 44942753 - 44942698
Alignment:
Q  117 taaaataaacgat--tcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    |||||||||||||  || |||||||||||||||| ||||||| |||||||||||||    
T  44942753 taaaataaacgatattcattcattcaaattgatagagtacatcgatacaatacaaa 44942698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 170
Target Start/End: Complemental strand, 3527452 - 3527398
Alignment:
Q  118 aaaataaacgat--tcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    ||||||||||||  || |||||||||||||||| ||||||| |||||||||||||    
T  3527452 aaaataaacgatattcattcattcaaattgatagagtacatcgatacaatacaaa 3527398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 170
Target Start/End: Original strand, 13878664 - 13878718
Alignment:
Q  118 aaaataaacgat--tcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    ||||||||||||  || |||||||||||||||| ||||||| |||||||||||||    
T  13878664 aaaataaacgatattcattcattcaaattgatagagtacatcgatacaatacaaa 13878718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 170
Target Start/End: Original strand, 14018789 - 14018843
Alignment:
Q  118 aaaataaacgat--tcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    ||||||||||||  || |||||||||||||||| ||||||| |||||||||||||    
T  14018789 aaaataaacgatattcattcattcaaattgatagagtacatcgatacaatacaaa 14018843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 170
Target Start/End: Original strand, 17267781 - 17267835
Alignment:
Q  118 aaaataaacgat--tcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    ||||||||||||  || || ||||||||||||| |||||||||||||||||||||    
T  17267781 aaaataaacgatattcatttattcaaattgatagagtacattgatacaatacaaa 17267835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 170
Target Start/End: Original strand, 18089067 - 18089121
Alignment:
Q  118 aaaataaacgat--tcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    ||||||||||||  || |||||||||||||||| ||||||| |||||||||||||    
T  18089067 aaaataaacgatattcattcattcaaattgatatagtacatcgatacaatacaaa 18089121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 170
Target Start/End: Original strand, 20560788 - 20560842
Alignment:
Q  118 aaaataaacgat--tcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    ||||||||||||  || |||||||||||||||| ||||||| |||||||||||||    
T  20560788 aaaataaacgatattcattcattcaaattgatagagtacatcgatacaatacaaa 20560842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 170
Target Start/End: Complemental strand, 25068307 - 25068253
Alignment:
Q  118 aaaataaacgat--tcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    ||||||||||||  || |||||||||||||||| ||||||| |||||||||||||    
T  25068307 aaaataaacgatattcattcattcaaattgatagagtacatcgatacaatacaaa 25068253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 170
Target Start/End: Original strand, 28230752 - 28230806
Alignment:
Q  118 aaaataaacgat--tcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    ||||||||||||  |||||||||||||||| || ||||||| |||||||||||||    
T  28230752 aaaataaacgatattcgttcattcaaattgttagagtacatcgatacaatacaaa 28230806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 170
Target Start/End: Complemental strand, 29543259 - 29543205
Alignment:
Q  118 aaaataaacgat--tcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    ||||||||||||  || |||||||||||||||| ||||||| |||||||||||||    
T  29543259 aaaataaacgatattcattcattcaaattgatagagtacatcgatacaatacaaa 29543205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 170
Target Start/End: Complemental strand, 33012514 - 33012460
Alignment:
Q  118 aaaataaacgat--tcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    ||||||||||||  || |||||||||||||||| ||||||| |||||||||||||    
T  33012514 aaaataaacgatattcattcattcaaattgatagagtacatcgatacaatacaaa 33012460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 170
Target Start/End: Complemental strand, 35333971 - 35333917
Alignment:
Q  118 aaaataaacgat--tcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    ||||||||||||  || |||||||||||||||| ||||||| |||||||||||||    
T  35333971 aaaataaacgatattcattcattcaaattgatagagtacatcgatacaatacaaa 35333917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 170
Target Start/End: Original strand, 38384121 - 38384175
Alignment:
Q  118 aaaataaacgat--tcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    ||||||||||||  || ||||||||||||||||||| |||| |||||||||||||    
T  38384121 aaaataaacgatattcattcattcaaattgataaagcacatcgatacaatacaaa 38384175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 170
Target Start/End: Original strand, 3397660 - 3397702
Alignment:
Q  128 attcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    |||| |||||||||||||||| ||||||||||| |||||||||    
T  3397660 attcattcattcaaattgatagagtacattgatgcaatacaaa 3397702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 170
Target Start/End: Complemental strand, 4739783 - 4739741
Alignment:
Q  128 attcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    |||| |||||||||||||||| ||||||| |||||||||||||    
T  4739783 attcattcattcaaattgatagagtacatcgatacaatacaaa 4739741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 170
Target Start/End: Complemental strand, 12705140 - 12705098
Alignment:
Q  128 attcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    |||| |||||||||||||||| ||||||| |||||||||||||    
T  12705140 attcattcattcaaattgatagagtacatcgatacaatacaaa 12705098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 170
Target Start/End: Complemental strand, 13269005 - 13268963
Alignment:
Q  128 attcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    |||| |||||||||||||||| |||||||||||||||| ||||    
T  13269005 attcattcattcaaattgatagagtacattgatacaatgcaaa 13268963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 170
Target Start/End: Original strand, 13740321 - 13740363
Alignment:
Q  128 attcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    |||| ||||||||||||||||||||||||  ||||||||||||    
T  13740321 attctttcattcaaattgataaagtacatcaatacaatacaaa 13740363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 170
Target Start/End: Complemental strand, 15920307 - 15920265
Alignment:
Q  128 attcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    |||| |||||||||||||||| ||||||| |||||||||||||    
T  15920307 attcattcattcaaattgatagagtacatcgatacaatacaaa 15920265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 170
Target Start/End: Complemental strand, 17792903 - 17792869
Alignment:
Q  136 attcaaattgataaagtacattgatacaatacaaa 170  Q
    ||||||||||||||||||||| |||||||||||||    
T  17792903 attcaaattgataaagtacatcgatacaatacaaa 17792869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 170
Target Start/End: Original strand, 28261572 - 28261614
Alignment:
Q  128 attcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    |||| |||||||||||||||| ||||||| |||||||||||||    
T  28261572 attcattcattcaaattgatagagtacatcgatacaatacaaa 28261614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 170
Target Start/End: Original strand, 31125068 - 31125102
Alignment:
Q  136 attcaaattgataaagtacattgatacaatacaaa 170  Q
    ||||||||||||||||||||||||| |||||||||    
T  31125068 attcaaattgataaagtacattgatgcaatacaaa 31125102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 166
Target Start/End: Original strand, 15786255 - 15786288
Alignment:
Q  133 ttcattcaaattgataaagtacattgatacaata 166  Q
    |||||||||||||||| |||||||||||||||||    
T  15786255 ttcattcaaattgatagagtacattgatacaata 15786288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 169
Target Start/End: Complemental strand, 31264783 - 31264742
Alignment:
Q  128 attcgttcattcaaattgataaagtacattgatacaatacaa 169  Q
    |||||||||||| || |||||||||||||||| |||||||||    
T  31264783 attcgttcattcgaaatgataaagtacattgacacaatacaa 31264742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0432 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 170
Target Start/End: Original strand, 2103 - 2157
Alignment:
Q  118 aaaataaacgat--tcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    ||||||||||||  || |||||||||||||||||||||||| |||||||||||||    
T  2103 aaaataaacgatattcattcattcaaattgataaagtacatcgatacaatacaaa 2157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 170
Target Start/End: Original strand, 12481034 - 12481088
Alignment:
Q  118 aaaataaacgat--tcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    ||||||||||||  || |||||||||||||||||||||||| |||||||||||||    
T  12481034 aaaataaacgatattcattcattcaaattgataaagtacatcgatacaatacaaa 12481088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 128 - 170
Target Start/End: Complemental strand, 4394224 - 4394182
Alignment:
Q  128 attcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    |||| |||||||||||||||| |||||||||||||||||||||    
T  4394224 attcattcattcaaattgatagagtacattgatacaatacaaa 4394182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 128 - 170
Target Start/End: Original strand, 29920584 - 29920626
Alignment:
Q  128 attcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    ||||||||||||||||||||||||||||| |||||| ||||||    
T  29920584 attcgttcattcaaattgataaagtacatcgatacattacaaa 29920626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 168
Target Start/End: Original strand, 31936288 - 31936340
Alignment:
Q  118 aaaataaacgat--tcgttcattcaaattgataaagtacattgatacaataca 168  Q
    ||||||||||||  ||||||||||||||||||| ||||||| |||||||||||    
T  31936288 aaaataaacgatattcgttcattcaaattgatagagtacatagatacaataca 31936340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 170
Target Start/End: Original strand, 19402507 - 19402561
Alignment:
Q  118 aaaataaacgat--tcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    ||||||||||||  || |||||||||||||||| ||||||| |||||||||||||    
T  19402507 aaaataaacgatattcattcattcaaattgatagagtacatcgatacaatacaaa 19402561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 170
Target Start/End: Original strand, 23637777 - 23637831
Alignment:
Q  118 aaaataaacga--ttcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    |||||||||||  ||| |||||||||||| ||||||||||| |||||||||||||    
T  23637777 aaaataaacgacattcattcattcaaattaataaagtacatcgatacaatacaaa 23637831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 170
Target Start/End: Complemental strand, 23654715 - 23654661
Alignment:
Q  118 aaaataaacgat--tcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    ||||||||||||  || |||||||||||||||| ||||||| |||||||||||||    
T  23654715 aaaataaacgatattcattcattcaaattgatagagtacatcgatacaatacaaa 23654661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 170
Target Start/End: Complemental strand, 30813523 - 30813469
Alignment:
Q  118 aaaataaacgat--tcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    ||||||||||||  || |||||||||||||||| ||||||| |||||||||||||    
T  30813523 aaaataaacgatattcattcattcaaattgatagagtacatcgatacaatacaaa 30813469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 169
Target Start/End: Complemental strand, 4660894 - 4660841
Alignment:
Q  118 aaaataaacgat--tcgttcattcaaattgataaagtacattgatacaatacaa 169  Q
    ||||||||||||  || |||||||||||||||| ||||||| ||||||||||||    
T  4660894 aaaataaacgatattcattcattcaaattgatagagtacatcgatacaatacaa 4660841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 170
Target Start/End: Original strand, 6295916 - 6295958
Alignment:
Q  128 attcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    |||| |||||||||||||||| ||||||| |||||||||||||    
T  6295916 attcattcattcaaattgatagagtacatcgatacaatacaaa 6295958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 170
Target Start/End: Original strand, 6302726 - 6302768
Alignment:
Q  128 attcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    |||| |||||||||||||||| ||||||| |||||||||||||    
T  6302726 attcattcattcaaattgatagagtacatcgatacaatacaaa 6302768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 169
Target Start/End: Original strand, 12653973 - 12654026
Alignment:
Q  118 aaaataaacgat--tcgttcattcaaattgataaagtacattgatacaatacaa 169  Q
    ||||||||||||  || |||||||||||||||| ||||||| ||||||||||||    
T  12653973 aaaataaacgatattcattcattcaaattgatagagtacatcgatacaatacaa 12654026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 170
Target Start/End: Complemental strand, 2488571 - 2488534
Alignment:
Q  133 ttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    |||||||||||||||| ||||||| |||||||||||||    
T  2488571 ttcattcaaattgatagagtacatcgatacaatacaaa 2488534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 165
Target Start/End: Complemental strand, 5545113 - 5545076
Alignment:
Q  128 attcgttcattcaaattgataaagtacattgatacaat 165  Q
    |||| |||||||||||||||| ||||||||||||||||    
T  5545113 attcattcattcaaattgatagagtacattgatacaat 5545076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 170
Target Start/End: Original strand, 8693343 - 8693380
Alignment:
Q  133 ttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    |||||||||||||||| ||||||| |||||||||||||    
T  8693343 ttcattcaaattgatagagtacatcgatacaatacaaa 8693380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 170
Target Start/End: Original strand, 14782828 - 14782864
Alignment:
Q  134 tcattcaaattgataaagtacattgatacaatacaaa 170  Q
    ||||||||||||||| ||||||| |||||||||||||    
T  14782828 tcattcaaattgatagagtacatcgatacaatacaaa 14782864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 170
Target Start/End: Original strand, 11734500 - 11734554
Alignment:
Q  118 aaaataaacgat--tcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    ||||||||||||  || |||||||||||||||||||||||| |||||||||||||    
T  11734500 aaaataaacgatattcattcattcaaattgataaagtacatcgatacaatacaaa 11734554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 170
Target Start/End: Original strand, 39179500 - 39179554
Alignment:
Q  118 aaaataaacgat--tcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    ||||||||||||  || |||||||||||||||||||||||| |||||||||||||    
T  39179500 aaaataaacgatattcattcattcaaattgataaagtacatcgatacaatacaaa 39179554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 170
Target Start/End: Complemental strand, 3740812 - 3740744
Alignment:
Q  104 ttttttgttttgttaaaataaacgat--tcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    |||||| |||||  ||||||||||||  || |||||||||||||||| |||||||||||||||| ||||    
T  3740812 tttttttttttgacaaaataaacgatattcattcattcaaattgatagagtacattgatacaatccaaa 3740744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 170
Target Start/End: Original strand, 17095896 - 17095950
Alignment:
Q  118 aaaataaacga--ttcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    |||||||||||  ||| |||||||||||||||| ||||||| |||||||||||||    
T  17095896 aaaataaacgacattcattcattcaaattgatagagtacatcgatacaatacaaa 17095950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 170
Target Start/End: Complemental strand, 17331794 - 17331740
Alignment:
Q  118 aaaataaacgat--tcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    ||||||||||||  || |||||||||||||||| ||||||| |||||||||||||    
T  17331794 aaaataaacgatattcattcattcaaattgatagagtacatcgatacaatacaaa 17331740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 170
Target Start/End: Original strand, 23881771 - 23881825
Alignment:
Q  118 aaaataaacgat--tcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    ||||||||||||  || |||||||||||||||| ||||||| |||||||||||||    
T  23881771 aaaataaacgatattcattcattcaaattgatagagtacatcgatacaatacaaa 23881825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 170
Target Start/End: Complemental strand, 34431530 - 34431476
Alignment:
Q  118 aaaataaacgat--tcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    ||||||||||||  || |||||||||||||||| ||||||| |||||||||||||    
T  34431530 aaaataaacgatattcattcattcaaattgatagagtacatcgatacaatacaaa 34431476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 170
Target Start/End: Original strand, 2555017 - 2555059
Alignment:
Q  128 attcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    |||| |||||||||||||||| ||||||| |||||||||||||    
T  2555017 attcattcattcaaattgatagagtacatcgatacaatacaaa 2555059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 165
Target Start/End: Complemental strand, 37219447 - 37219398
Alignment:
Q  118 aaaataaacga--ttcgttcattcaaattgataaagtacattgatacaat 165  Q
    |||||||||||  ||| |||||||||||||||| ||||||||||||||||    
T  37219447 aaaataaacgaaattcattcattcaaattgatagagtacattgatacaat 37219398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 170
Target Start/End: Original strand, 7771493 - 7771530
Alignment:
Q  133 ttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    |||||||||||||||| ||||||| |||||||||||||    
T  7771493 ttcattcaaattgatatagtacatcgatacaatacaaa 7771530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 165
Target Start/End: Original strand, 8811838 - 8811870
Alignment:
Q  133 ttcattcaaattgataaagtacattgatacaat 165  Q
    |||||||||||||||| ||||||||||||||||    
T  8811838 ttcattcaaattgatagagtacattgatacaat 8811870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 170
Target Start/End: Original strand, 17732060 - 17732096
Alignment:
Q  134 tcattcaaattgataaagtacattgatacaatacaaa 170  Q
    ||||||||||||||| ||||||| |||||||||||||    
T  17732060 tcattcaaattgatagagtacatcgatacaatacaaa 17732096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 170
Target Start/End: Original strand, 393929 - 393983
Alignment:
Q  118 aaaataaacgat--tcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    ||||||||||||  || |||||||||||||||||||||||| |||||||||||||    
T  393929 aaaataaacgatattcattcattcaaattgataaagtacatcgatacaatacaaa 393983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 170
Target Start/End: Complemental strand, 7060780 - 7060726
Alignment:
Q  118 aaaataaacgat--tcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    ||||||||||||  || |||||||||||||||| |||||||||||||||||||||    
T  7060780 aaaataaacgatattcattcattcaaattgatagagtacattgatacaatacaaa 7060726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 170
Target Start/End: Original strand, 8517114 - 8517168
Alignment:
Q  118 aaaataaacgat--tcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    ||||||||||||  || |||||||||||||||| |||||||||||||||||||||    
T  8517114 aaaataaacgatattcattcattcaaattgatagagtacattgatacaatacaaa 8517168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 128 - 170
Target Start/End: Complemental strand, 3159416 - 3159374
Alignment:
Q  128 attcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    |||| |||||||||||||||||||||||| |||||||||||||    
T  3159416 attcattcattcaaattgataaagtacatcgatacaatacaaa 3159374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 128 - 170
Target Start/End: Original strand, 24611465 - 24611507
Alignment:
Q  128 attcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    |||| |||||||||||||||| |||||||||||||||||||||    
T  24611465 attcattcattcaaattgatagagtacattgatacaatacaaa 24611507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 128 - 170
Target Start/End: Original strand, 29266571 - 29266613
Alignment:
Q  128 attcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    |||| |||||||||||||||| |||||||||||||||||||||    
T  29266571 attcattcattcaaattgatagagtacattgatacaatacaaa 29266613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 170
Target Start/End: Complemental strand, 51152563 - 51152527
Alignment:
Q  134 tcattcaaattgataaagtacattgatacaatacaaa 170  Q
    ||||||||||||||||||||||| |||||||||||||    
T  51152563 tcattcaaattgataaagtacatcgatacaatacaaa 51152527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 170
Target Start/End: Complemental strand, 13966009 - 13965955
Alignment:
Q  118 aaaataaacgat--tcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    ||||||||||||  || |||||||||||||||| ||||||| |||||||||||||    
T  13966009 aaaataaacgatattcattcattcaaattgatagagtacatcgatacaatacaaa 13965955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 170
Target Start/End: Complemental strand, 42198019 - 42197965
Alignment:
Q  118 aaaataaacgat--tcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    ||||||||||||  || |||||||||||||||| ||||||| |||||||||||||    
T  42198019 aaaataaacgatattcattcattcaaattgatagagtacatcgatacaatacaaa 42197965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 170
Target Start/End: Original strand, 45350725 - 45350779
Alignment:
Q  118 aaaataaacgat--tcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    ||||||||||||  || |||||||||||||||| ||||||| |||||||||||||    
T  45350725 aaaataaacgatattcattcattcaaattgatagagtacatcgatacaatacaaa 45350779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 170
Target Start/End: Original strand, 45360204 - 45360258
Alignment:
Q  118 aaaataaacgat--tcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    ||||||||||||  || |||||||||||||||| ||||||| |||||||||||||    
T  45360204 aaaataaacgatattcattcattcaaattgatagagtacatcgatacaatacaaa 45360258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 170
Target Start/End: Original strand, 626226 - 626268
Alignment:
Q  128 attcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    |||| |||||||||||||||| ||||||| |||||||||||||    
T  626226 attcattcattcaaattgatagagtacatcgatacaatacaaa 626268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 170
Target Start/End: Complemental strand, 6882398 - 6882356
Alignment:
Q  128 attcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    |||| |||||||||||||||| ||||||| |||||||||||||    
T  6882398 attcattcattcaaattgatagagtacatcgatacaatacaaa 6882356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 170
Target Start/End: Complemental strand, 24100587 - 24100545
Alignment:
Q  128 attcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    |||| |||||||||||||||| ||||||| |||||||||||||    
T  24100587 attcattcattcaaattgatagagtacatcgatacaatacaaa 24100545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 170
Target Start/End: Complemental strand, 24789630 - 24789588
Alignment:
Q  128 attcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    ||||||||||||||||| ||| ||||||| |||||||||||||    
T  24789630 attcgttcattcaaattaatagagtacatcgatacaatacaaa 24789588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 170
Target Start/End: Original strand, 24818629 - 24818671
Alignment:
Q  128 attcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    ||||||||||||||||| ||| ||||||| |||||||||||||    
T  24818629 attcgttcattcaaattaatagagtacatcgatacaatacaaa 24818671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 170
Target Start/End: Complemental strand, 25658615 - 25658573
Alignment:
Q  128 attcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    |||| |||||||||||||| ||| |||||||||||||||||||    
T  25658615 attcattcattcaaattgacaaaatacattgatacaatacaaa 25658573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 170
Target Start/End: Complemental strand, 28837509 - 28837467
Alignment:
Q  128 attcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    |||| |||||||||||||||| ||||||| |||||||||||||    
T  28837509 attcattcattcaaattgatagagtacatcgatacaatacaaa 28837467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 170
Target Start/End: Complemental strand, 31932701 - 31932659
Alignment:
Q  128 attcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    |||| |||||||||||||||||||||||| || ||||||||||    
T  31932701 attcattcattcaaattgataaagtacatcgacacaatacaaa 31932659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 170
Target Start/End: Original strand, 38943824 - 38943866
Alignment:
Q  128 attcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    |||| |||||||||||||||| ||||||| |||||||||||||    
T  38943824 attcattcattcaaattgatagagtacatcgatacaatacaaa 38943866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 170
Target Start/End: Original strand, 3171296 - 3171333
Alignment:
Q  133 ttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    |||||||||||||||| ||||| |||||||||||||||    
T  3171296 ttcattcaaattgatatagtacgttgatacaatacaaa 3171333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 170
Target Start/End: Complemental strand, 8712957 - 8712920
Alignment:
Q  133 ttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    |||||||||||||||| ||||||| |||||||||||||    
T  8712957 ttcattcaaattgatagagtacatcgatacaatacaaa 8712920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 170
Target Start/End: Complemental strand, 23926465 - 23926432
Alignment:
Q  137 ttcaaattgataaagtacattgatacaatacaaa 170  Q
    |||||||||||| |||||||||||||||||||||    
T  23926465 ttcaaattgatagagtacattgatacaatacaaa 23926432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 170
Target Start/End: Complemental strand, 27091157 - 27091120
Alignment:
Q  133 ttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    |||||||||||||||| ||||||| |||||||||||||    
T  27091157 ttcattcaaattgatagagtacatcgatacaatacaaa 27091120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 169
Target Start/End: Complemental strand, 31522400 - 31522359
Alignment:
Q  128 attcgttcattcaaattgataaagtacattgatacaatacaa 169  Q
    |||| |||||||||||||||| ||||||| ||||||||||||    
T  31522400 attcattcattcaaattgatagagtacatcgatacaatacaa 31522359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 170
Target Start/End: Original strand, 32616517 - 32616568
Alignment:
Q  118 aaaataaacgattcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    ||||||||| |||| |||||||||||||||| ||||||| |||| ||||||||    
T  32616517 aaaataaac-attcattcattcaaattgatagagtacatcgatataatacaaa 32616568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 168
Target Start/End: Original strand, 56236498 - 56236538
Alignment:
Q  128 attcgttcattcaaattgataaagtacattgatacaataca 168  Q
    |||| |||||||||||||||| ||||||| |||||||||||    
T  56236498 attcattcattcaaattgatagagtacatcgatacaataca 56236538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 170
Target Start/End: Complemental strand, 12872072 - 12872018
Alignment:
Q  118 aaaataaacgat--tcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    ||||||||||||  || |||||||||||||||| |||||||||||||||||||||    
T  12872072 aaaataaacgatattcattcattcaaattgatagagtacattgatacaatacaaa 12872018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 170
Target Start/End: Original strand, 4882032 - 4882086
Alignment:
Q  118 aaaataaacgat--tcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    ||||||||||||  || |||||||||||||||| ||||||| |||||||||||||    
T  4882032 aaaataaacgatattcattcattcaaattgatagagtacatcgatacaatacaaa 4882086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 170
Target Start/End: Original strand, 25032758 - 25032812
Alignment:
Q  118 aaaataaacgat--tcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    ||||||||||||  || |||||||||||||||| ||||||| |||||||||||||    
T  25032758 aaaataaacgatattcattcattcaaattgatagagtacatcgatacaatacaaa 25032812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 170
Target Start/End: Complemental strand, 44517614 - 44517560
Alignment:
Q  118 aaaataaacgat--tcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    ||||||||||||  || |||||||||||||||| ||||||| |||||||||||||    
T  44517614 aaaataaacgatattcattcattcaaattgatagagtacatcgatacaatacaaa 44517560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 170
Target Start/End: Complemental strand, 2351054 - 2351012
Alignment:
Q  128 attcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    ||||||||||||||||||||| ||||||| ||| |||||||||    
T  2351054 attcgttcattcaaattgatagagtacatcgatgcaatacaaa 2351012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 170
Target Start/End: Original strand, 13488203 - 13488245
Alignment:
Q  128 attcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    |||| |||||||||||||||| ||||||| |||||||||||||    
T  13488203 attcattcattcaaattgatagagtacatcgatacaatacaaa 13488245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 170
Target Start/End: Original strand, 15790951 - 15790985
Alignment:
Q  136 attcaaattgataaagtacattgatacaatacaaa 170  Q
    ||||||||||||||||||||| |||||||||||||    
T  15790951 attcaaattgataaagtacatcgatacaatacaaa 15790985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 170
Target Start/End: Complemental strand, 26771539 - 26771497
Alignment:
Q  128 attcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    |||| |||||||||||||||| ||||||| |||||||||||||    
T  26771539 attcattcattcaaattgatagagtacatcgatacaatacaaa 26771497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 170
Target Start/End: Original strand, 33486703 - 33486745
Alignment:
Q  128 attcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    |||| |||||||||||||||| ||||||| |||||||||||||    
T  33486703 attcattcattcaaattgatagagtacatcgatacaatacaaa 33486745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 170
Target Start/End: Original strand, 33938711 - 33938753
Alignment:
Q  128 attcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    |||| |||||||||||||||| ||||||| |||||||||||||    
T  33938711 attcattcattcaaattgatagagtacatcgatacaatacaaa 33938753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 170
Target Start/End: Original strand, 45193303 - 45193337
Alignment:
Q  136 attcaaattgataaagtacattgatacaatacaaa 170  Q
    ||||||||||||||||||||| |||||||||||||    
T  45193303 attcaaattgataaagtacatcgatacaatacaaa 45193337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 170
Target Start/End: Complemental strand, 14265728 - 14265695
Alignment:
Q  137 ttcaaattgataaagtacattgatacaatacaaa 170  Q
    |||||||||||| |||||||||||||||||||||    
T  14265728 ttcaaattgatagagtacattgatacaatacaaa 14265695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 170
Target Start/End: Original strand, 25689525 - 25689562
Alignment:
Q  133 ttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    |||||||||||||||| |||| ||||||||||||||||    
T  25689525 ttcattcaaattgatagagtatattgatacaatacaaa 25689562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 170
Target Start/End: Complemental strand, 27535146 - 27535109
Alignment:
Q  133 ttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    |||||||||||||||| ||||||| |||||||||||||    
T  27535146 ttcattcaaattgatagagtacatcgatacaatacaaa 27535109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 128 - 170
Target Start/End: Complemental strand, 4757602 - 4757560
Alignment:
Q  128 attcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    |||| |||||||||||||||| |||||||||||||||||||||    
T  4757602 attcattcattcaaattgatagagtacattgatacaatacaaa 4757560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 170
Target Start/End: Original strand, 31407431 - 31407468
Alignment:
Q  133 ttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    |||||||||||||||| |||||||||||||||||||||    
T  31407431 ttcattcaaattgatatagtacattgatacaatacaaa 31407468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 170
Target Start/End: Original strand, 1809901 - 1809955
Alignment:
Q  118 aaaataaacgat--tcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    ||||||||||||  || |||||||||||||||| ||||||| |||||||||||||    
T  1809901 aaaataaacgatattcattcattcaaattgatagagtacatcgatacaatacaaa 1809955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 170
Target Start/End: Original strand, 24790833 - 24790887
Alignment:
Q  118 aaaataaacgat--tcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    ||||||||||||  || |||||||||||||||| ||||||| |||||||||||||    
T  24790833 aaaataaacgatattcattcattcaaattgatagagtacatcgatacaatacaaa 24790887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 170
Target Start/End: Complemental strand, 9502022 - 9501980
Alignment:
Q  128 attcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    |||| |||||||||||||||| ||||||| |||||||||||||    
T  9502022 attcattcattcaaattgatagagtacatcgatacaatacaaa 9501980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 170
Target Start/End: Original strand, 28296790 - 28296832
Alignment:
Q  128 attcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    |||| |||||||||||||||| ||||||| |||||||||||||    
T  28296790 attcattcattcaaattgatagagtacatcgatacaatacaaa 28296832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 168
Target Start/End: Complemental strand, 2968981 - 2968929
Alignment:
Q  118 aaaataaacgat--tcgttcattcaaattgataaagtacattgatacaataca 168  Q
    ||||||||||||  || |||||||||||||||| ||||||| |||||||||||    
T  2968981 aaaataaacgatattcattcattcaaattgatagagtacatcgatacaataca 2968929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 170
Target Start/End: Original strand, 30026562 - 30026599
Alignment:
Q  133 ttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    |||||||||||||||| |||| ||||||||||||||||    
T  30026562 ttcattcaaattgatagagtatattgatacaatacaaa 30026599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 165
Target Start/End: Complemental strand, 10334925 - 10334893
Alignment:
Q  133 ttcattcaaattgataaagtacattgatacaat 165  Q
    |||||||||||||||| ||||||||||||||||    
T  10334925 ttcattcaaattgatagagtacattgatacaat 10334893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 170
Target Start/End: Complemental strand, 35541 - 35487
Alignment:
Q  118 aaaataaacgat--tcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    ||||||||||||  || |||||||||||||||| ||||||| |||||||||||||    
T  35541 aaaataaacgatattcattcattcaaattgatagagtacatcgatacaatacaaa 35487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 170
Target Start/End: Original strand, 3734 - 3776
Alignment:
Q  128 attcgttcattcaaattgataaagtacattgatacaatacaaa 170  Q
    |||| |||||||||||||||| ||||||| |||||||||||||    
T  3734 attcattcattcaaattgatagagtacatcgatacaatacaaa 3776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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