View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20443_low_3 (Length: 430)
Name: NF20443_low_3
Description: NF20443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20443_low_3 |
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| [»] scaffold0070 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 390; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 9 - 414
Target Start/End: Original strand, 24914173 - 24914578
Alignment:
| Q |
9 |
gatgaagatggtcatagacatattaaaagccaaagaggatacaagtcaagaagagcccaagactaggaaatatatgaagatgaagatgaactttcagatc |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||| |
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| T |
24914173 |
gatgaagatggtcatagacatattaaaagccaaagaggatacaagtcaagaagagcccaggacaaggaaatatatgaagatgaagatgaactttaagatc |
24914272 |
T |
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| Q |
109 |
ctaagcttgaaatcattatcctgtgtcaaaagtacaaaagcagattatatatcatacattttttcccaaaatcaacaagcaaaattgatttattttaccg |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24914273 |
ctaagcttgaaatcattatcctgtgtcaaaagtacaaaagcagattatatatcatacattttttcccaaaatcaacaagcaaaattgatttattttaccg |
24914372 |
T |
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| Q |
209 |
gaaaataaaagactataattcagaagtcagtcaacgaagaaattgttgggtgacataactaagaggacatgagtgtagttgtgtgacattattacaattt |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
24914373 |
gaaaataaaagactataattcagaagtcagtcaacgaagaaattgttgggtgacataactaagaggacatgagtgtggttgtgtgacattattacaattt |
24914472 |
T |
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| Q |
309 |
acaatagacgtaacagacacttaaaatagcaaaattaaaagtcgaatatgtttttgatctccgtaaatatttaaaattttgtttttattccatttaacat |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24914473 |
acaatagacgtaacagacacttaaaatagcaaaattaaaagtcgaatatgtttttgatctccgtaaatatttaaaattttgtttttattccatttaacat |
24914572 |
T |
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| Q |
409 |
agtaaa |
414 |
Q |
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|||||| |
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| T |
24914573 |
agtaaa |
24914578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 63 - 193
Target Start/End: Complemental strand, 25603545 - 25603414
Alignment:
| Q |
63 |
gcccaagactaggaaatatatgaagatgaagatgaactttcagatcctaagcttgaaatcattatcctgtgtcaaaagtacaaaagcagattatatatca |
162 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
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| T |
25603545 |
gcccaagacagggaaatatatgaagatgaagatgaactttcagatcctaagcttgaaatcattatcctgcctcaaaagtacaaaaacagattatatatca |
25603446 |
T |
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| Q |
163 |
tacatt-ttttcccaaaatcaacaagcaaaat |
193 |
Q |
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|||||| ||||||||||||||||||||||||| |
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| T |
25603445 |
tacattgttttcccaaaatcaacaagcaaaat |
25603414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 230 - 315
Target Start/End: Complemental strand, 25602503 - 25602421
Alignment:
| Q |
230 |
agaagtcagtcaacgaagaaattgttgggtgacataactaagaggacatgagtgtagttgtgtgacattattacaatttacaatag |
315 |
Q |
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| T |
25602503 |
agaagtcagtcaacgaagaaattgttgggtgacataactaagagg---tgagtgtagttgggtgacattattacattttacaatag |
25602421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 88 - 168
Target Start/End: Complemental strand, 25385480 - 25385400
Alignment:
| Q |
88 |
atgaagatgaactttcagatcctaagcttgaaatcattatcctgtgtcaaaagtacaaaagcagattatatatcatacatt |
168 |
Q |
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|||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| | |||||||||||| |||| |
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| T |
25385480 |
atgaagatgaactttcagatcctaagcttggaatcattatcttgtgtcaaaagtacaaaaatatattatatatcatgcatt |
25385400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 100 - 168
Target Start/End: Complemental strand, 25338307 - 25338239
Alignment:
| Q |
100 |
tttcagatcctaagcttgaaatcattatcctgtgtcaaaagtacaaaagcagattatatatcatacatt |
168 |
Q |
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|||| |||||||| | |||||| |||||| |||||||||||||||| | ||||||||||||||||||| |
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| T |
25338307 |
tttctgatcctaaacctgaaataattatcatgtgtcaaaagtacaacaatagattatatatcatacatt |
25338239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: scaffold0070
Description:
Target: scaffold0070; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 18209 - 18276
Alignment:
| Q |
9 |
gatgaagatggtcatagacatattaaaagccaaagaggatacaagtcaagaagagcccaagactagga |
76 |
Q |
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|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||| |
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| T |
18209 |
gatgaagatggtcatagacatattcaaagccaaagaggataaaagtcaagaagagcccaagacaagga |
18276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 88 - 168
Target Start/End: Original strand, 18321 - 18403
Alignment:
| Q |
88 |
atgaagatgaactttcagatcctaagcttgaaatcat--tatcctgtgtcaaaagtacaaaagcagattatatatcatacatt |
168 |
Q |
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|||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||| | |||||||||||| |||| |
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| T |
18321 |
atgaagatgaactttcagatcctaagcttggaatcattatatcttgtgtcaaaagtacaaaaatatattatatatcatgcatt |
18403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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