View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20443_low_5 (Length: 413)

Name: NF20443_low_5
Description: NF20443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20443_low_5
NF20443_low_5
[»] chr7 (23 HSPs)
chr7 (108-403)||(45648098-45648393)
chr7 (108-402)||(42040331-42040626)
chr7 (108-401)||(47843644-47843934)
chr7 (158-401)||(48152986-48153229)
chr7 (163-401)||(40836343-40836583)
chr7 (108-389)||(45492125-45492420)
chr7 (130-388)||(3751392-3751650)
chr7 (133-389)||(25482505-25482772)
chr7 (158-388)||(43495674-43495908)
chr7 (108-398)||(2185621-2185902)
chr7 (108-394)||(25310882-25311159)
chr7 (258-400)||(34471717-34471858)
chr7 (112-350)||(42509185-42509414)
chr7 (230-388)||(22201069-22201225)
chr7 (230-388)||(22236596-22236752)
chr7 (179-304)||(7857938-7858065)
chr7 (267-381)||(22543396-22543507)
chr7 (163-282)||(45804918-45805037)
chr7 (109-181)||(43728101-43728173)
chr7 (272-388)||(48138467-48138583)
chr7 (277-388)||(2483735-2483846)
chr7 (128-389)||(31397082-31397346)
chr7 (202-268)||(22542930-22542996)
[»] chr8 (29 HSPs)
chr8 (108-403)||(11789248-11789543)
chr8 (108-398)||(6166392-6166682)
chr8 (159-403)||(9409885-9410127)
chr8 (108-403)||(25429975-25430272)
chr8 (158-389)||(32855986-32856217)
chr8 (108-403)||(18928433-18928730)
chr8 (108-392)||(24888641-24888927)
chr8 (108-403)||(24728432-24728724)
chr8 (174-401)||(23877331-23877560)
chr8 (260-401)||(17748925-17749066)
chr8 (158-282)||(17748796-17748922)
chr8 (233-387)||(12006684-12006836)
chr8 (108-388)||(11990714-11990997)
chr8 (257-337)||(13003382-13003460)
chr8 (108-205)||(31332506-31332603)
chr8 (131-352)||(31431283-31431512)
chr8 (272-388)||(14180015-14180131)
chr8 (221-338)||(18320728-18320844)
chr8 (237-389)||(9136732-9136883)
chr8 (229-296)||(11755701-11755768)
chr8 (131-205)||(12006850-12006924)
chr8 (349-400)||(18320681-18320732)
chr8 (272-355)||(37231776-37231859)
chr8 (283-352)||(26079438-26079507)
chr8 (311-402)||(16591534-16591624)
chr8 (349-391)||(11755783-11755825)
chr8 (158-192)||(23877286-23877320)
chr8 (326-388)||(35536903-35536965)
chr8 (128-198)||(37231936-37232006)
[»] scaffold0565 (1 HSPs)
scaffold0565 (108-403)||(7856-8151)
[»] chr5 (25 HSPs)
chr5 (108-403)||(29230952-29231247)
chr5 (108-403)||(19099923-19100202)
chr5 (120-388)||(3387249-3387517)
chr5 (158-400)||(26564911-26565155)
chr5 (126-389)||(31113888-31114152)
chr5 (158-401)||(2627881-2628131)
chr5 (112-352)||(32076413-32076655)
chr5 (158-392)||(34510806-34511039)
chr5 (108-398)||(39935575-39935861)
chr5 (133-386)||(5836480-5836729)
chr5 (158-331)||(8229316-8229489)
chr5 (169-400)||(7057059-7057287)
chr5 (242-397)||(27925519-27925673)
chr5 (109-381)||(31210725-31211007)
chr5 (230-398)||(13407257-13407424)
chr5 (131-403)||(16755974-16756245)
chr5 (158-286)||(34764588-34764716)
chr5 (261-402)||(42990636-42990778)
chr5 (110-198)||(8802687-8802779)
chr5 (160-366)||(41368597-41368806)
chr5 (272-377)||(12118293-12118395)
chr5 (158-289)||(29674927-29675060)
chr5 (283-352)||(28470234-28470303)
chr5 (169-206)||(27925692-27925729)
chr5 (350-402)||(28470331-28470383)
[»] chr4 (32 HSPs)
chr4 (108-381)||(45773984-45774254)
chr4 (108-403)||(19721581-19721876)
chr4 (108-403)||(2295328-2295622)
chr4 (117-403)||(53018448-53018734)
chr4 (108-403)||(15476620-15476915)
chr4 (109-389)||(35103389-35103669)
chr4 (176-389)||(53586368-53586583)
chr4 (108-398)||(27675397-27675692)
chr4 (108-389)||(40217526-40217811)
chr4 (151-388)||(44987234-44987471)
chr4 (121-249)||(2242769-2242899)
chr4 (158-353)||(6008208-6008403)
chr4 (235-390)||(10037865-10038019)
chr4 (141-388)||(4775760-4776007)
chr4 (169-400)||(24917493-24917714)
chr4 (108-294)||(7208396-7208583)
chr4 (239-403)||(47922951-47923116)
chr4 (158-292)||(1052368-1052505)
chr4 (288-378)||(2242914-2243004)
chr4 (287-381)||(53014846-53014936)
chr4 (131-389)||(35823493-35823742)
chr4 (317-401)||(24913807-24913890)
chr4 (240-403)||(23241801-23241962)
chr4 (283-403)||(45661792-45661911)
chr4 (242-352)||(28102017-28102126)
chr4 (131-196)||(25059434-25059499)
chr4 (324-388)||(7208592-7208656)
chr4 (262-389)||(43770594-43770722)
chr4 (117-183)||(47922891-47922957)
chr4 (260-390)||(22198899-22199029)
chr4 (283-337)||(21619576-21619630)
chr4 (311-352)||(4110266-4110307)
[»] chr6 (18 HSPs)
chr6 (108-403)||(2032229-2032526)
chr6 (108-399)||(687957-688245)
chr6 (108-403)||(32340151-32340444)
chr6 (158-401)||(2988051-2988295)
chr6 (156-379)||(10229422-10229647)
chr6 (131-389)||(8485910-8486168)
chr6 (131-389)||(12311922-12312179)
chr6 (169-338)||(30928331-30928500)
chr6 (131-302)||(12283617-12283790)
chr6 (221-321)||(10567321-10567414)
chr6 (277-403)||(22297370-22297495)
chr6 (158-322)||(7434853-7435019)
chr6 (112-207)||(22297248-22297343)
chr6 (159-352)||(22053889-22054080)
chr6 (131-182)||(26546013-26546063)
chr6 (260-388)||(6724502-6724636)
chr6 (333-390)||(17533522-17533579)
chr6 (287-353)||(26546168-26546234)
[»] chr2 (32 HSPs)
chr2 (108-378)||(42794648-42794918)
chr2 (109-378)||(41323867-41324135)
chr2 (165-403)||(7017788-7018028)
chr2 (108-389)||(30485559-30485841)
chr2 (108-327)||(30382682-30382903)
chr2 (122-400)||(17328663-17328947)
chr2 (179-401)||(38221559-38221781)
chr2 (108-402)||(37272784-37273078)
chr2 (181-388)||(11562673-11562877)
chr2 (169-403)||(36467161-36467396)
chr2 (237-403)||(35298388-35298555)
chr2 (158-301)||(40498676-40498821)
chr2 (158-401)||(40363767-40364009)
chr2 (261-403)||(38140535-38140681)
chr2 (221-392)||(16496782-16496953)
chr2 (264-400)||(40498537-40498672)
chr2 (108-261)||(38140833-38140992)
chr2 (159-352)||(44364274-44364465)
chr2 (221-352)||(38558636-38558765)
chr2 (108-206)||(35306240-35306337)
chr2 (284-378)||(18561078-18561171)
chr2 (283-352)||(21812975-21813044)
chr2 (291-392)||(35428729-35428829)
chr2 (260-353)||(3353116-3353209)
chr2 (288-388)||(30776645-30776744)
chr2 (258-388)||(2788872-2789001)
chr2 (257-388)||(26352561-26352689)
chr2 (133-205)||(40083089-40083161)
chr2 (260-381)||(43355765-43355890)
chr2 (140-205)||(12599175-12599240)
chr2 (140-198)||(11457972-11458030)
chr2 (160-188)||(41952415-41952443)
[»] chr3 (27 HSPs)
chr3 (108-392)||(46979227-46979511)
chr3 (108-403)||(7629071-7629364)
chr3 (108-400)||(29324037-29324332)
chr3 (158-360)||(45472595-45472797)
chr3 (169-400)||(27163964-27164193)
chr3 (158-375)||(36504803-36505020)
chr3 (158-400)||(38489651-38489893)
chr3 (151-403)||(40614775-40615026)
chr3 (224-362)||(32835231-32835370)
chr3 (169-378)||(20178972-20179174)
chr3 (221-392)||(52204113-52204283)
chr3 (244-403)||(20369258-20369415)
chr3 (178-403)||(52695505-52695732)
chr3 (119-403)||(39614930-39615207)
chr3 (221-400)||(20619218-20619396)
chr3 (309-403)||(51241341-51241434)
chr3 (242-400)||(35296380-35296536)
chr3 (112-207)||(51240854-51240948)
chr3 (309-402)||(17063930-17064023)
chr3 (241-389)||(24611468-24611617)
chr3 (260-389)||(47014226-47014357)
chr3 (158-204)||(17063888-17063934)
chr3 (236-330)||(52203963-52204057)
chr3 (158-234)||(53530625-53530701)
chr3 (131-206)||(21853838-21853913)
chr3 (328-389)||(2111391-2111452)
chr3 (363-403)||(32834947-32834987)
[»] chr1 (27 HSPs)
chr1 (109-403)||(17116201-17116497)
chr1 (147-378)||(50726630-50726861)
chr1 (108-401)||(41827636-41827922)
chr1 (108-403)||(31513501-31513787)
chr1 (108-403)||(38682790-38683091)
chr1 (108-400)||(14286975-14287270)
chr1 (158-401)||(13558438-13558682)
chr1 (167-399)||(40693887-40694120)
chr1 (118-403)||(4966637-4966923)
chr1 (118-403)||(4972959-4973251)
chr1 (108-298)||(25294510-25294700)
chr1 (158-389)||(11767567-11767801)
chr1 (120-298)||(40032690-40032871)
chr1 (224-388)||(16122756-16122921)
chr1 (264-400)||(10443522-10443657)
chr1 (108-207)||(13643921-13644020)
chr1 (277-403)||(13643769-13643894)
chr1 (131-340)||(51898831-51899041)
chr1 (221-400)||(270890-271067)
chr1 (236-381)||(30902365-30902511)
chr1 (260-388)||(46594253-46594385)
chr1 (260-388)||(22791116-22791245)
chr1 (260-389)||(50709492-50709624)
chr1 (272-388)||(29488210-29488325)
chr1 (277-377)||(781830-781929)
chr1 (323-403)||(40032600-40032683)
chr1 (260-353)||(50461234-50461327)
[»] scaffold0495 (1 HSPs)
scaffold0495 (156-379)||(6137-6362)
[»] scaffold0581 (1 HSPs)
scaffold0581 (318-379)||(10046-10106)
[»] scaffold0015 (1 HSPs)
scaffold0015 (363-400)||(38405-38442)


Alignment Details
Target: chr7 (Bit Score: 288; Significance: 1e-161; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 108 - 403
Target Start/End: Original strand, 45648098 - 45648393
Alignment:
Q  108 cttataaatcatattacatttttatatgttgggatatcaagagaaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaatcac 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45648098 cttataaatcatattacatttttatatgttgggatatcaagagaaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaatcac 45648197  T
Q  208 gtccctcgctatgttcatccacaagaagtataattttaagtggttcactgagaaacaattctattgatgcatatctaaaattgaatcatatacatctata 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45648198 gtccctcgctatgttcatccacaagaagtataattttaagtggttcaccgagaaacaattctattgatgcatatctaaaattgaatcatatacatctata 45648297  T
Q  308 atgaatttttacaacattgtctcacttttttactcttcatctttttctaggatacgtatctgtgaagtatcttagaagtatccttatgtatctgtg 403  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45648298 atgaatttttacaacattgtctcacttttttactcctcatctttttctaggatacgtatctgtgaagtatcttagaagtatccttatgtatctgtg 45648393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 108 - 402
Target Start/End: Original strand, 42040331 - 42040626
Alignment:
Q  108 cttataaatcatattacatttttatatgttgggatatcaagagaaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaatcac 207  Q
    |||||||| ||||||||||||| ||||||||||||||  |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  42040331 cttataaagcatattacattttcatatgttgggatattgagagaaacatcaataaaagaactcaacacaaattttatctaatgttgattaactgaatcac 42040430  T
Q  208 gtccctcgctatgttcatccacaagaagtataattttaagtggttcactgagaaacaattctattgatgcatatctaaaattgaatcatatacatctata 307  Q
     || |||| |  |||||||||||||||||||||||||||||| ||||  |||| |||||||||||||||||||||||||||||| |||||||||||||||    
T  42040431 atctctcgatgcgttcatccacaagaagtataattttaagtgtttcatcgagagacaattctattgatgcatatctaaaattgagtcatatacatctata 42040530  T
Q  308 atgaatttttacaacattgtctcac-ttttttactcttcatctttttctaggatacgtatctgtgaagtatcttagaagtatccttatgtatctgt 402  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||| |||||||||    
T  42040531 atgaatttttacaacattgtctcactttttttactcttcatctttttctagaatacgtgtctgcgaagtatcttagaagtatccttgtgtatctgt 42040626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 108 - 401
Target Start/End: Original strand, 47843644 - 47843934
Alignment:
Q  108 cttataaatcatattacatttttatatgttgggatatcaagagaaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaatcac 207  Q
    |||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  47843644 cttataaaccatattatattttcatatgttgggatatcaagagaaacatcattaaaagaactcaacacaaattttatctaatgttgattaactgaatcac 47843743  T
Q  208 gtccctcgctatgttcatccacaagaagtataattttaagtggttcactgagaaacaattctattgatgcatatctaaaattgaatcatatacatctata 307  Q
     |  ||| |    |||||||||||||||||||||||||||||||||     ||||||||| |||||||||||||||||||||||||||||||||||| ||    
T  47843744 ctatctctcc---ttcatccacaagaagtataattttaagtggttcgtcaggaaacaattttattgatgcatatctaaaattgaatcatatacatctcta 47843840  T
Q  308 atgaatttttacaacattgtctcacttttttactcttcatctttttctaggatacgtatctgtgaagtatcttagaagtatccttatgtatctg 401  Q
     ||| ||||||||||||||||| |||||||||| |||||||||||||||||||||| ||  |||||||||||||||||||||||| | ||||||    
T  47843841 ctgagtttttacaacattgtctaacttttttacccttcatctttttctaggatacgcatacgtgaagtatcttagaagtatccttgtctatctg 47843934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 158 - 401
Target Start/End: Complemental strand, 48153229 - 48152986
Alignment:
Q  158 attaaaagaactcaagacaaattttatctaatgttgattaactgaatcacgtccctcgc--tatgttcatccacaagaagtataattttaagtggttcac 255  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||||| || ||| |  ||  ||||||||||||||||||||||| ||||||||||     
T  48153229 attaaaagaactcaaga--aattttatctaatgttgattaactgaatcacctctctctcgttacattcatccacaagaagtataatttcaagtggttcat 48153132  T
Q  256 tgagaaacaattctattgatgcatatctaaaattgaatcatatacatctataatgaatttttacaacattgtctcacttttttactcttcatctttttct 355  Q
     |||||||||||||| |||||||| |||||||||||||| ||||||||| ||  |||| ||||||||||| ||||||||||||| |||||||||||||||    
T  48153131 cgagaaacaattctagtgatgcatgtctaaaattgaatcgtatacatctctacggaatgtttacaacattttctcacttttttattcttcatctttttct 48153032  T
Q  356 aggatacgtatctgtgaagtatcttagaagtatccttatgtatctg 401  Q
    ||||||||||| |||||| ||||||| |||||||||| ||||||||    
T  48153031 aggatacgtatatgtgaaatatcttataagtatccttgtgtatctg 48152986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 163 - 401
Target Start/End: Complemental strand, 40836583 - 40836343
Alignment:
Q  163 aagaactcaagacaaattttatctaatgttgattaactgaatcacgtccctcgc--tatgttcatccacaagaagtataattttaagtggttcactgaga 260  Q
    ||||||| || |||||||||||| ||||||||||||||||||||| || ||| |  ||  |||||||| |||||||||||||||||||||||||  ||||    
T  40836583 aagaacttaacacaaattttatcgaatgttgattaactgaatcacctctctctcgttaccttcatccataagaagtataattttaagtggttcatcgaga 40836484  T
Q  261 aacaattctattgatgcatatctaaaattgaatcatatacatctataatgaatttttacaacattgtctcacttttttactcttcatctttttctaggat 360  Q
    |||||||||| |||||||||||||||||||||||||||| |||| || |  || |||||||| ||||||||||||||||||| ||||||||||||| |||    
T  40836483 aacaattctagtgatgcatatctaaaattgaatcatatagatctctactagatgtttacaacgttgtctcacttttttactcctcatctttttctatgat 40836384  T
Q  361 acgtatctgtgaagtatcttagaagtatccttatgtatctg 401  Q
    |||||||||||||||| |||| ||||||  || ||||||||    
T  40836383 acgtatctgtgaagtaccttataagtatgtttgtgtatctg 40836343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 108 - 389
Target Start/End: Complemental strand, 45492420 - 45492125
Alignment:
Q  108 cttataaatcatattacatttt--tatatgttgggatatcaagagaaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaatc 205  Q
    |||||||| ||||||| | |||  |||||||| ||||||| ||||||  || ||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  45492420 cttataaaccatattatactttcatatatgtttggatatcgagagaagaataattaaaagaactcaacacatattttatctaatgttgattaactgaatc 45492321  T
Q  206 acgtccctcgctatgt--------tcatccacaagaagtataattttaagtggttcactgagaaacaattctattgatgcatatctaaaattgaatcata 297  Q
    || || ||| || | |        |||||||||||||||||||||||||||| ||||||| |||||||||| | | ||||||||||||||||||||||||    
T  45492320 acctctctctctctctcattaccttcatccacaagaagtataattttaagtgattcactgtgaaacaattcgactaatgcatatctaaaattgaatcata 45492221  T
Q  298 tacatctataatgaatttttacaacattgtctcactttttta----ctcttcatctttttctaggatacgtatctgtgaagtatcttagaagtatc 389  Q
    ||| ||| |  |||||||||||||||||||||||||||||||    | ||||||||||||||||||||| ||| || ||||||||||| |||||||    
T  45492220 tacgtctctcctgaatttttacaacattgtctcacttttttaatttcccttcatctttttctaggatacatatatgcgaagtatcttataagtatc 45492125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 130 - 388
Target Start/End: Original strand, 3751392 - 3751650
Alignment:
Q  130 tatatgttgggatatcaagagaaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaatcacgtccctcgctatgttcatccac 229  Q
    |||||||| ||| ||  |||||| |||||||||||  |||||| | ||||||||| |||||||||||||||||||||| || |||| ||  ||||| |||    
T  3751392 tatatgttaggaaattgagagaagcatcattaaaaacactcaacataaattttatttaatgttgattaactgaatcacctctctcgttaccttcattcac 3751491  T
Q  230 aagaagtataattttaagtggttcactgagaaacaattctattgatgcatatctaaaattgaatcatatacatctataatgaatttttacaacattgtct 329  Q
    |||||||||||||||||||| ||||  ||||||||||| |||||||||||||||||||||||||||||||||||| || | | |||| ||||||||||||    
T  3751492 aagaagtataattttaagtgattcatcgagaaacaattttattgatgcatatctaaaattgaatcatatacatctctactaagttttcacaacattgtct 3751591  T
Q  330 cac-ttttttactcttcatctttttctaggatacgtatctgtgaagtatcttagaagtat 388  Q
    ||| |||||||| || ||||||||| || |||| |||| |||||||||||||| ||||||    
T  3751592 cactttttttaccctgcatcttttt-taagatatgtatatgtgaagtatcttaaaagtat 3751650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 133 - 389
Target Start/End: Original strand, 25482505 - 25482772
Alignment:
Q  133 atgttgggatatcaagagaaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaatcacgtccctcgctatgttcatccacaag 232  Q
    ||||||| ||||  ||||||| |||||||||||||||||| | | ||||||||||||||||||||||||| |||| || ||||||| | ||||||||||     
T  25482505 atgttggaatattgagagaaatatcattaaaagaactcaacatatattttatctaatgttgattaactgagtcacctctctcgctacgatcatccacaac 25482604  T
Q  233 aagtataattttaagtggttcactgagaaacaattctattgatgcatatctaaaattgaatcatatacatctataatga-------------atttttac 319  Q
    |  |||| ||||||||| ||||  || |||||||| |||||||||||||||||||||||||||||||||||||||||||             ||||||||    
T  25482605 a--tatatttttaagtgtttcatcgaaaaacaattatattgatgcatatctaaaattgaatcatatacatctataatgaatttttaaagcatatttttac 25482702  T
Q  320 aacattgtctcacttttttactcttcatctttttctaggatacgtatctgtgaagtatcttagaagtatc 389  Q
    |||||||||||||||||||| | |||||| |||||||  |||||||| ||||||||||||||||||||||    
T  25482703 aacattgtctcacttttttaattttcatccttttctaaaatacgtatttgtgaagtatcttagaagtatc 25482772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 158 - 388
Target Start/End: Original strand, 43495674 - 43495908
Alignment:
Q  158 attaaaagaactcaagacaaattttatctaatgttgattaactgaatcacg----tccctcgctatgttcatccacaagaagtataattttaagtggttc 253  Q
    |||||||||||| ||  |||||||||||||||||| ||||| ||||||||     || |||| ||  ||||| ||||||| |||||||||||||||||||    
T  43495674 attaaaagaacttaactcaaattttatctaatgttaattaaatgaatcactcacctctctcgttaccttcattcacaagatgtataattttaagtggttc 43495773  T
Q  254 actgagaaacaattctattgatgcatatctaaaattgaatcatatacatctataatgaatttttacaacattgtctcacttttttactcttcatcttttt 353  Q
    |  ||||||||||| || |||||||||||||||||||||||||||| |||| || || || ||||||| |||||||||||||||||||||||| ||||||    
T  43495774 atcgagaaacaattttagtgatgcatatctaaaattgaatcatatatatctctactggatgtttacaagattgtctcacttttttactcttcaccttttt 43495873  T
Q  354 ctaggatacgtatctgtgaagtatcttagaagtat 388  Q
     |||||||| |||||||||||||||||| ||||||    
T  43495874 ataggatacatatctgtgaagtatcttataagtat 43495908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 108 - 398
Target Start/End: Original strand, 2185621 - 2185902
Alignment:
Q  108 cttataaatcatattacatttttatatgttgggatatcaagagaaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaatcac 207  Q
    |||||||||||||||| ||||| ||||||| ||||||| | ||||  || ||||||||||||||| |||||||||||| |||||||||||| |||||||     
T  2185621 cttataaatcatattatattttcatatgtttggatatcgacagaagaataattaaaagaactcaacacaaattttatcaaatgttgattaaatgaatcat 2185720  T
Q  208 gtccctcgct----atgttcatccacaagaagtataattttaagtggttcactgagaaacaattctattgatgcatatctaaaattgaatcatatacatc 303  Q
     || ||| ||    |  ||||||||||||||||||||||||              |||||||||||| | |||||||||||||||||||||||||| |||    
T  2185721 ctctctccctcattaccttcatccacaagaagtataattttt-------------gaaacaattctactaatgcatatctaaaattgaatcatatatatc 2185807  T
Q  304 tataatgaatttttacaacattgtctcacttttttactcttcatctttttctaggatacgtatctgtgaagtatcttagaagtatccttatgtat 398  Q
    | |  | ||||||||||||||||||||  ||||||||  || ||||||||||||||||| ||| |||||||||||||| |||||||||| |||||    
T  2185808 tctccttaatttttacaacattgtctcgtttttttaccttttatctttttctaggatacatatatgtgaagtatcttataagtatccttgtgtat 2185902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 108 - 394
Target Start/End: Original strand, 25310882 - 25311159
Alignment:
Q  108 cttataaatcatattacatttttatatgttgggatatcaagagaaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaatcac 207  Q
    |||||| ||||||||| ||||| ||||||||||||||  |||||| |||| |||||||||||||| |||||||||||||||||||||||| || |||       
T  25310882 cttatatatcatattatattttcatatgttgggatattgagagaagcatcgttaaaagaactcaacacaaattttatctaatgttgattagctaaat--- 25310978  T
Q  208 gtccctcgctatgttcatccacaagaagtataattttaagtggttcactgagaaacaattctattgatgcatatctaaaattgaatcatatacatctata 307  Q
     |   ||  ||  ||||||||||||||||||||||||||||||||||   |||||||||| || || ||||||| ||||||| |||||||||||||| ||    
T  25310979 ttttttcattaccttcatccacaagaagtataattttaagtggttcatcaagaaacaattatactgttgcatatttaaaatttaatcatatacatctcta 25311078  T
Q  308 atgaatttttacaacattgtctcacttttttactcttcatctttttctaggat--acgtatctgtgaagtatcttagaagtatccttat 394  Q
            |||||||||||||||||||||| || |||||| ||||||||||||  |||| |||||||||||||||  ||||||| ||||    
T  25311079 -------cttacaacattgtctcactttttgac-cttcatatttttctaggatacacgtttctgtgaagtatcttctaagtatctttat 25311159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 258 - 400
Target Start/End: Complemental strand, 34471858 - 34471717
Alignment:
Q  258 agaaacaattctattgatgcatatctaaaattgaatcatatacatctataatgaatttttacaacattgtctcacttttttactcttcatctttttctag 357  Q
    ||||||| |||||  ||||||||||||||||||||| |||||||||| || ||||||| ||||||||||| |||||||||||| ||||||  ||| ||||    
T  34471858 agaaacagttctagagatgcatatctaaaattgaattatatacatctctactgaatttctacaacattgtgtcacttttttacacttcat-atttcctag 34471760  T
Q  358 gatacgtatctgtgaagtatcttagaagtatccttatgtatct 400  Q
    ||||||||| |||||||||||||| |||||| ||| |||||||    
T  34471759 gatacgtatatgtgaagtatcttataagtattcttgtgtatct 34471717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 112 - 350
Target Start/End: Complemental strand, 42509414 - 42509185
Alignment:
Q  112 taaatcatattacatttttatatgttgggatatcaagagaaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaatcacgtcc 211  Q
    |||| ||||||| | ||| ||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||  || ||     
T  42509414 taaaccatattatactttcatatgttgggatatcgagagaagcatcattaaaagaactcaacacaaattttatctaatgttgattaattgaa--acatct 42509317  T
Q  212 ctcgctatgttcatccacaagaagtataattttaagtggttcactgagaaacaattctattgatgcatatctaaaattgaatcatatacatctataatga 311  Q
    |||  ||  |||||||| ||||||  |||||||||  ||||||     ||  ||||||| | |||||| |||||||||||||  |||| || | || |||    
T  42509316 ctctttaccttcatccataagaag--taattttaaacggttca---tcaataaattctactaatgcatgtctaaaattgaat--tatatatttttactga 42509224  T
Q  312 atttttacaacattgtctcacttttttactcttcatctt 350  Q
    ||||||||||||||||||||||||||||| | |||||||    
T  42509223 atttttacaacattgtctcacttttttacccatcatctt 42509185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 230 - 388
Target Start/End: Complemental strand, 22201225 - 22201069
Alignment:
Q  230 aagaagtataattttaagtggttcactgagaaacaattctattgatgcatatctaaaattgaatcatatacatctataatgaatttttacaacattgtct 329  Q
    |||||| |||||||||||||||| |  ||||||||||||||  ||| || |||||||||| || |||||||||||  | |||||||||| ||||||||||    
T  22201225 aagaagcataattttaagtggtttatcgagaaacaattctaccgataca-atctaaaattaaaacatatacatctccactgaatttttagaacattgtct 22201127  T
Q  330 cacttttttactcttcatctttttctaggatacgtatctgtgaagtatcttagaagtat 388  Q
    || ||||||||  |||||| ||||||| |||||||| ||||||||||||||| ||||||    
T  22201126 catttttttaccattcatc-ttttctatgatacgtacctgtgaagtatcttataagtat 22201069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 230 - 388
Target Start/End: Original strand, 22236596 - 22236752
Alignment:
Q  230 aagaagtataattttaagtggttcactgagaaacaattctattgatgcatatctaaaattgaatcatatacatctataatgaatttttacaacattgtct 329  Q
    |||||| |||||||||||||||| |  ||||||||||||||  ||| || |||||||||| || |||||||||||  | |||||||||| ||||||||||    
T  22236596 aagaagcataattttaagtggtttatcgagaaacaattctaccgataca-atctaaaattaaaacatatacatctccactgaatttttagaacattgtct 22236694  T
Q  330 cacttttttactcttcatctttttctaggatacgtatctgtgaagtatcttagaagtat 388  Q
    || ||||||||  |||||| ||||||| |||||||| ||||||||||||||| ||||||    
T  22236695 catttttttaccattcatc-ttttctatgatacgtacctgtgaagtatcttataagtat 22236752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 179 - 304
Target Start/End: Complemental strand, 7858065 - 7857938
Alignment:
Q  179 ttttatctaatgttgattaactgaatcacgtccctc--gctatgttcatccacaagaagtataattttaagtggttcactgagaaacaattctattgatg 276  Q
    |||||||||||||||||||| |||||| | || |||  | ||   |||||||||| || |||| |||||||||||||| ||||||||||||||| || |     
T  7858065 ttttatctaatgttgattaattgaatctcctctctcttgttaccatcatccacaataaatatatttttaagtggttcaatgagaaacaattctactgttt 7857966  T
Q  277 catatctaaaattgaatcatatacatct 304  Q
    ||||||||||||||||||||||||||||    
T  7857965 catatctaaaattgaatcatatacatct 7857938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 267 - 381
Target Start/End: Original strand, 22543396 - 22543507
Alignment:
Q  267 tctattgatgcatatctaaaattgaatcatatacatctataatgaatttttacaacattgtctcacttttttactcttcatctttttctaggatacgtat 366  Q
    |||||||||||| |||||||||||||||||||||||||  | ||||| ||||||||||  |||||| |||||||   ||||||||||||| |||| ||||    
T  22543396 tctattgatgcacatctaaaattgaatcatatacatctcaactgaatgtttacaacat--tctcac-tttttacctgtcatctttttctaagatatgtat 22543492  T
Q  367 ctgtgaagtatctta 381  Q
     ||||||||||||||    
T  22543493 atgtgaagtatctta 22543507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 163 - 282
Target Start/End: Complemental strand, 45805037 - 45804918
Alignment:
Q  163 aagaactcaagacaaattttatctaatgttgattaactgaatcacgtccctcgctatgttcatccacaagaagtataattttaagtggttcactgagaaa 262  Q
    |||||||||| ||||||||||||| ||| ||||||| |||||||  || |||| ||  ||||||||| | |||||||| |||||||||||||    ||||    
T  45805037 aagaactcaacacaaattttatctgatgatgattaattgaatcatctctctcgttaccttcatccacgaaaagtataaatttaagtggttcatcaggaaa 45804938  T
Q  263 caattctattgatgcatatc 282  Q
    |||||||| |||||||||||    
T  45804937 caattctaatgatgcatatc 45804918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 109 - 181
Target Start/End: Complemental strand, 43728173 - 43728101
Alignment:
Q  109 ttataaatcatattacatttttatatgttgggatatcaagagaaacatcattaaaagaactcaagacaaattt 181  Q
    ||||||| ||||||| ||||| ||||||||||||||| |||||| ||||||||||| ||||||| ||||||||    
T  43728173 ttataaaccatattatattttcatatgttgggatatcgagagaagcatcattaaaaaaactcaacacaaattt 43728101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 272 - 388
Target Start/End: Complemental strand, 48138583 - 48138467
Alignment:
Q  272 tgatgcatatctaaaattgaatcatatacatctataatgaatttttacaacattgtctcacttttttactcttcatctttttctaggatacgtatctgtg 371  Q
    |||| ||||||| ||||||||||||||||||||  | | |||||| | ||||  |||||| || ||||  |||||| |||||| ||||||||| ||||||    
T  48138583 tgattcatatcttaaattgaatcatatacatctccattaaattttcagaacacagtctcatttatttaagcttcatttttttccaggatacgtctctgtg 48138484  T
Q  372 aagtatcttagaagtat 388  Q
    |||||||||| ||||||    
T  48138483 aagtatcttataagtat 48138467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 277 - 388
Target Start/End: Complemental strand, 2483846 - 2483735
Alignment:
Q  277 catatctaaaattgaatcatatacatctataatgaatttttacaacattgtctcacttttttactcttcatctttttctaggatacgtatctgtgaagta 376  Q
    ||||||| ||||||||||||||||||||  | || ||||| ||||||| |||||||||||||||  ||  ||| | || || |||||| ||| |||||||    
T  2483846 catatcttaaattgaatcatatacatcttcattgcattttcacaacatagtctcacttttttacaatttttctctctccagaatacgtctctttgaagta 2483747  T
Q  377 tcttagaagtat 388  Q
    ||||| ||||||    
T  2483746 tcttataagtat 2483735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 389
Target Start/End: Original strand, 31397082 - 31397346
Alignment:
Q  128 tttatatgttgggatatcaagagaaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaatcacgtccctcgc--tatgttcat 225  Q
    |||||||||||||||||||| | |  ||||| ||||||||||||| ||||| ||| | ||||||||||| | |||||  | || ||| |  ||  |||||    
T  31397082 tttatatgttgggatatcaacaaatgcatcaataaaagaactcaaaacaaagtttgtttaatgttgattgattgaatatcttctctctcgttactttcat 31397181  T
Q  226 ccacaagaagtataatttt-aagtggttcactgagaaacaattctattgatgcatatctaaaattgaatcatatacatctataatgaatttttacaacat 324  Q
     ||| |  |  |||||||| || ||||| | ||| |||||||| || ||||  |||||| ||||||| ||||||| || |  | | |||||| ||||||     
T  31397182 tcaccaataacataattttcaattggttaattgaaaaacaattatagtgatttatatcttaaattgagtcatatatatttccattcaattttcacaacac 31397281  T
Q  325 tgtctcacttttttactcttcatctttttctaggatacgtatctgtgaagtatcttagaagtatc 389  Q
     |||||||||||||||  ||| | |||||| ||||||||||| ||||||  |||||| |||||||    
T  31397282 agtctcacttttttacctttcgtttttttccaggatacgtatgtgtgaaacatcttataagtatc 31397346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 202 - 268
Target Start/End: Original strand, 22542930 - 22542996
Alignment:
Q  202 aatcacgtccctcgctatgttcatccacaagaagtataattttaagtggttcactgagaaacaattc 268  Q
    |||||| || |||| ||| |||||| | ||||| |||||||||||||||||||  ||||||||||||    
T  22542930 aatcacctctctcgttatcttcatctataagaaatataattttaagtggttcatggagaaacaattc 22542996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 108 - 403
Target Start/End: Original strand, 11789248 - 11789543
Alignment:
Q  108 cttataaatcatattacatttttatatgttgggatatcaagagaaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaatcac 207  Q
    |||||||| ||||||||||||| ||||||||||||||  |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  11789248 cttataaaccatattacattttcatatgttgggatattgagagaaacatcattaaaagaactcaacacaaattttatctaatgttgattaactgaatcac 11789347  T
Q  208 gtccctcgctatgttcatccacaagaagtataattttaagtggttcactgagaaacaattctattgatgcatatctaaaattgaatcatatacatctata 307  Q
     || |||||||||||||||||||||||||||||||||||||| ||||  |||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  11789348 atctctcgctatgttcatccacaagaagtataattttaagtgtttcatcgagaaacagttctattgatgcatatctaaaattgagtcatatacatctata 11789447  T
Q  308 atgaatttttacaacattgtctcacttttttactcttcatctttttctaggatacgtatctgtgaagtatcttagaagtatccttatgtatctgtg 403  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||| |||||||| || ||||| ||||    
T  11789448 atgaatttttacaacattgtctcactttcttactcttcatctttttctaggatatgtgtctgtgaagtatcttggaagtatcattgtgtatttgtg 11789543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 108 - 398
Target Start/End: Complemental strand, 6166682 - 6166392
Alignment:
Q  108 cttataaatcatattacatttttatatgttgggatatcaagagaaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaatcac 207  Q
    |||||||||||||||||||||| ||||| || |||||  ||||||||||||||||||||||| || |  |||||||| ||||||||  ||||||||||||    
T  6166682 cttataaatcatattacattttcatatgatgtgatattgagagaaacatcattaaaagaacttaacattaattttatttaatgttgtctaactgaatcac 6166583  T
Q  208 gtccctcgctatgttcatccacaagaagtataattttaagtggttcactgagaaacaattctattgatgcatatctaaaattgaatcatatacatctata 307  Q
     || ||||||| |||| |||||||||| |||||||||||||| ||||  ||||| ||||| || ||||||||||||||||||||||||||||||| ||||    
T  6166582 ctctctcgctacgttcttccacaagaaatataattttaagtgtttcatcgagaatcaattatactgatgcatatctaaaattgaatcatatacatttata 6166483  T
Q  308 atgaatttttacaacattgtctcacttttttactcttcatctttttctaggatacgtatctgtgaagtatcttagaagtatccttatgtat 398  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||| ||||||| |||||    
T  6166482 atgaatttttacaacattgtctcacttttttactcttcatgtttttctaggatacgtatctataaagtatcttagaaatatccttgtgtat 6166392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 159 - 403
Target Start/End: Complemental strand, 9410127 - 9409885
Alignment:
Q  159 ttaaaagaactcaagacaaattttatctaatgttgattaactgaatcacgtccctcgctatgttcatccacaagaagtataattttaagtggttcactga 258  Q
    |||||||||||||| ||||| |||||||||| ||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||| ||||  ||    
T  9410127 ttaaaagaactcaacacaaaatttatctaatattgattaactgaatcacatctctcgctacgttcatccacaagaagtataattttaagtgtttcatcga 9410028  T
Q  259 gaaacaattctattgatgcatatctaaaattgaatcatatacatctataatgaatttttacaacattgtctcacttttttactcttcatctttttctagg 358  Q
    |||| ||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||| |  |||| ||||||||||||||||| ||||||||||    
T  9410027 gaaataattctattgatgaatatgtaaaattgagtcatatacatctataatgaatttttacaaaa--gtcttacttttttactcttcatttttttctagg 9409930  T
Q  359 atacgtatctgtgaagtatcttagaagtatccttatgtatctgtg 403  Q
    |||| | ||| ||||||||||||||||||||||| ||||||||||    
T  9409929 atacatgtctctgaagtatcttagaagtatccttgtgtatctgtg 9409885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 108 - 403
Target Start/End: Complemental strand, 25430272 - 25429975
Alignment:
Q  108 cttataaatcatattacatttttatatgttgggatatcaagagaaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaatcac 207  Q
    |||||||| ||||||| ||||| |||||||  | |||| ||||||  || ||||||||||||||| ||| ||||||| ||||||||||||||||||||||    
T  25430272 cttataaaccatattatattttcatatgttttgttatcgagagaagaataattaaaagaactcaacacatattttatttaatgttgattaactgaatcac 25430173  T
Q  208 gtccctcgc--tatgttcatccacaagaagtataattttaagtggttcactgagaaacaattctattgatgcatatctaaaattgaatcatatacatcta 305  Q
      | ||| |  ||  ||||| ||||||||||||||||||||||||||||  | |||||||||||| | |||||||||||||||||||||||||| ||||     
T  25430172 ccctctctcattaccttcattcacaagaagtataattttaagtggttcatcgtgaaacaattctactaatgcatatctaaaattgaatcatatatatctg 25430073  T
Q  306 taatgaatttttacaacattgtctcacttttttactcttcatctttttctaggatacgtatctgtgaagtatcttagaagtatccttatgtatctgtg 403  Q
    | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| || ||||||||||| |||||||||| ||||||||||    
T  25430072 tcatgaatttttacaacattgtctcacttttttacccttcatctttttctaggatacatatatgcgaagtatcttataagtatccttgtgtatctgtg 25429975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 158 - 389
Target Start/End: Complemental strand, 32856217 - 32855986
Alignment:
Q  158 attaaaagaactcaagacaaattttatctaatgttgattaactgaatcacgtccctcgc--tatgttcatccacaagaagtataattttaagtggttcac 255  Q
    |||||||||| |||| || |||||||||||||||||||||||||| |||| |  ||| |  ||  ||||||||||||||||||| ||||||||||||||     
T  32856217 attaaaagaattcaacacgaattttatctaatgttgattaactga-tcacctttctctcattaccttcatccacaagaagtatagttttaagtggttcat 32856119  T
Q  256 tgagaaacaattctattgatgcatatctaaaattgaatcatatacatctataatgaatttttacaacattgtctcacttttttactcttcatctttttct 355  Q
     |||||||||||||| |||| |||||||||||||||||||||||||||| || ||||| |||||||||||||||| ||||||||||||||||||||||||    
T  32856118 cgagaaacaattctagtgat-catatctaaaattgaatcatatacatctctactgaatgtttacaacattgtctcgcttttttactcttcatctttttct 32856020  T
Q  356 aggatacgtatctgtgaagtatcttagaagtatc 389  Q
    |||||||||||||||||||||||||| |||||||    
T  32856019 aggatacgtatctgtgaagtatcttataagtatc 32855986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 108 - 403
Target Start/End: Original strand, 18928433 - 18928730
Alignment:
Q  108 cttataaatcatattacatttttatatgttgggatatcaagagaaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaatcac 207  Q
    |||||||| ||||||| ||||| |||||||  |||||| || ||| ||| ||||||||||||||| ||||||||||| |||| |||||||||||||||||    
T  18928433 cttataaaccatattatattttcatatgttcagatatcgagtgaagcataattaaaagaactcaacacaaattttatttaatattgattaactgaatcac 18928532  T
Q  208 gtccctcgc--tatgttcatcc-acaagaagtataattttaagtggttcactgagaaacaattctattgatgcatatctaaaattgaatcatatacatct 304  Q
     || ||| |  ||| ||||||| |||| || |||||||||||||||||||  |||||||||||||| |||||||||||||||||||||||||||||||||    
T  18928533 atctctctcgttatcttcatcccacaaaaaatataattttaagtggttcatcgagaaacaattctactgatgcatatctaaaattgaatcatatacatct 18928632  T
Q  305 ataatgaatttttacaacattgtctcacttttttactcttcatctttttctaggatacgtatctgtgaagtatcttagaagtatccttatgtatctgtg 403  Q
      | | ||||||||||||||||||||| |||||||||| ||||  |||||||||||| |||| ||| |||||||||| ||||||| || ||||| ||||    
T  18928633 caattcaatttttacaacattgtctcaattttttactcctcat-attttctaggataagtatatgtaaagtatcttataagtatcattgtgtatatgtg 18928730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 108 - 392
Target Start/End: Original strand, 24888641 - 24888927
Alignment:
Q  108 cttataaatcatattacatttttatatgttgggatatcaagagaaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaatcac 207  Q
    |||||||| ||||||| ||||| |||||||  | |||| ||||||  || ||||||||||||||| | | ||||||||||||||||||||||||||||||    
T  24888641 cttataaaccatattatattttcatatgttttgttatcgagagaagaataattaaaagaactcaacatatattttatctaatgttgattaactgaatcac 24888740  T
Q  208 gtccctcgc--tatgttcatccacaagaagtataattttaagtggttcactgagaaacaattctattgatgcatatctaaaattgaatcatatacatcta 305  Q
      | ||| |  ||  ||||| ||||||||||||||||||||||||||||| | |||||||||||| | |||||||||||||||||||||||||| || |     
T  24888741 ccctctctcattaccttcattcacaagaagtataattttaagtggttcaccgtgaaacaattctactaatgcatatctaaaattgaatcatatatatttg 24888840  T
Q  306 taatgaatttttacaacattgtctcacttttttactcttcatctttttctaggatacgtatctgtgaagtatcttagaagtatcctt 392  Q
    | |||||||||||||| |||||||||||| ||||| |||||||||||| |||||||| ||| || ||||||||||| ||||||||||    
T  24888841 tcatgaatttttacaatattgtctcacttgtttacccttcatctttttttaggatacatatatgcgaagtatcttataagtatcctt 24888927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 108 - 403
Target Start/End: Original strand, 24728432 - 24728724
Alignment:
Q  108 cttataaatcatattacatttttatatgttgggatatcaagagaaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaatcac 207  Q
    |||||||| ||||||| ||||| ||||||| ||||||| ||||||  || |||||||||| |||| | ||||||||||||||||||||||||||||||||    
T  24728432 cttataaaccatattatattttcatatgtttggatatcgagagaagaataattaaaagaagtcaacataaattttatctaatgttgattaactgaatcac 24728531  T
Q  208 gtccctcgc--tatgttcatccacaagaagtataattttaagtggttcactgagaaacaattctattgatgcatatctaaaattgaatcatatacatcta 305  Q
     || ||| |  ||  |||||||||||||||||||||||||| ||||||||   |||||||||| | | ||||||||||     ||||||||||| ||||     
T  24728532 ctctctctcgttaccttcatccacaagaagtataattttaaatggttcaccatgaaacaattccactaatgcatatct-----tgaatcatatagatctc 24728626  T
Q  306 taatgaatttttacaacattgtctcacttttttactcttcatctttttctaggatacgtatctgtgaagtatcttagaagtatccttatgtatctgtg 403  Q
    |  |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| || ||||||||||| |||||||||| ||||| ||||    
T  24728627 tcctgaatttttacaacattgtctcacttttttacccttcatctttttctaggatacatatatgcgaagtatcttataagtatccttgtgtatttgtg 24728724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 174 - 401
Target Start/End: Original strand, 23877331 - 23877560
Alignment:
Q  174 acaaattttatctaatgttgattaactgaatcacgtccctcgc--tatgttcatccacaagaagtataattttaagtggttcactgagaaacaattctat 271  Q
    ||||||||||||||||||| |||||||||| ||| || ||| |  ||  || |||||||| ||||||||||||||||||||||  |  |||||||||||     
T  23877331 acaaattttatctaatgttaattaactgaaccacctctctctcgttacctttatccacaataagtataattttaagtggttcatcggaaaacaattctag 23877430  T
Q  272 tgatgcatatctaaaattgaatcatatacatctataatgaatttttacaacattgtctcacttttttactcttcatctttttctaggatacgtatctgtg 371  Q
    | |||||||||||||||||||||||||| |||| || ||||| ||||||||||  ||||||||| ||||||||||||||||| ||||||| || | ||||    
T  23877431 tcatgcatatctaaaattgaatcatatatatctctactgaatgtttacaacatgatctcactttcttactcttcatctttttgtaggatatgtttatgtg 23877530  T
Q  372 aagtatcttagaagtatccttatgtatctg 401  Q
    |||||| ||| ||||||| || ||||||||    
T  23877531 aagtattttataagtatcattgtgtatctg 23877560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 260 - 401
Target Start/End: Original strand, 17748925 - 17749066
Alignment:
Q  260 aaacaattctattgatgcatatctaaaattgaatcatatacatctataatgaatttttacaacattgtctcacttttttactcttcatctttttctagga 359  Q
    ||||||||||| |||||||||||  |||||||||||||||||||| || ||||| | |||||| |||||||||||||||||||||| | |||||||||||    
T  17748925 aaacaattctagtgatgcatatcataaattgaatcatatacatctctactgaatgtatacaacgttgtctcacttttttactcttcgtatttttctagga 17749024  T
Q  360 tacgtatctgtgaagtatcttagaagtatccttatgtatctg 401  Q
    ||||||| |||||||||||||| |||||||| | ||||||||    
T  17749025 tacgtatttgtgaagtatcttataagtatccatgtgtatctg 17749066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 158 - 282
Target Start/End: Original strand, 17748796 - 17748922
Alignment:
Q  158 attaaaagaactcaagacaaattttatctaatgttgattaactgaatcacgt--ccctcgctatgttcatccacaagaagtataattttaagtggttcac 255  Q
    |||||||||||| || ||||||||||||||||||||||||||| |||||| |  | |||| ||  ||||||||||||||||||||||||||||||||||     
T  17748796 attaaaagaactgaacacaaattttatctaatgttgattaacttaatcacctttctctcgttaacttcatccacaagaagtataattttaagtggttcat 17748895  T
Q  256 tgagaaacaattctattgatgcatatc 282  Q
    ||||||||||||||| |||||||||||    
T  17748896 tgagaaacaattctagtgatgcatatc 17748922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 233 - 387
Target Start/End: Complemental strand, 12006836 - 12006684
Alignment:
Q  233 aagtataattttaagtggttcactgagaaacaattctattgatgcatatctaaaattgaatcatatacatctataatgaatttttacaacattgtctcac 332  Q
    ||||||||||||||| ||||||   | ||||||||||| |||||||||||||||||||||||||||||||||  | |||||||| ||||||||||| |||    
T  12006836 aagtataattttaagcggttcatcaaaaaacaattctagtgatgcatatctaaaattgaatcatatacatctccactgaattttcacaacattgtc-cac 12006738  T
Q  333 ttttttactcttcatctttttctaggatacgtatctgtgaagtatcttagaagta 387  Q
    ||||| || ||| || |||||||||||| ||||| || ||| ||||||| |||||    
T  12006737 tttttcaccctttat-tttttctaggatgcgtatatgggaaatatcttataagta 12006684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 108 - 388
Target Start/End: Complemental strand, 11990997 - 11990714
Alignment:
Q  108 cttataaatcatattacatttttat----atgttgggatatcaagagaaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaa 203  Q
    |||||||| ||||||| ||||||||    ||||||||||||||| | || |||||||||||||| |||| ||||||||| |||||| |||||||| ||||    
T  11990997 cttataaaccatattatatttttattcaaatgttgggatatcaacataagcatcattaaaagaattcaatacaaattttgtctaatattgattaattgaa 11990898  T
Q  204 tcacgt--ccctcgctatgttcatccacaagaagtataattttaagtggttcactgagaaacaattctattgatgcatatctaaaattgaatcatataca 301  Q
    ||   |  | |||| ||  ||| ||||||   ||||||||||| ||||||| |   ||||||||||||| | |||||||||||||||||| | |||||||    
T  11990897 tcttctttctctcgttaccttcgtccacag--agtataatttttagtggtttatctagaaacaattctactaatgcatatctaaaattgagttatataca 11990800  T
Q  302 tctataatgaatttttacaacattgtctcacttttttactcttcatctttttctaggatacgtatctgtgaagtatcttagaagtat 388  Q
    | |  | ||||||||  ||||| |||| ||||||| ||| ||||||| |||||||||||| |||| | | |||||| ||| ||||||    
T  11990799 tatccactgaattttcgcaacaatgtcacacttttctacccttcatc-ttttctaggatatgtatattttaagtattttataagtat 11990714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 257 - 337
Target Start/End: Complemental strand, 13003460 - 13003382
Alignment:
Q  257 gagaaacaattctattgatgcatatctaaaattgaatcatatacatctataatgaatttttacaacattgtctcacttttt 337  Q
    |||||||||||||| | |||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||    
T  13003460 gagaaacaattctagttatgcatatctaaaattgaatcatatacatctat--tgaatttctacaacattgtctcacttttt 13003382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 108 - 205
Target Start/End: Original strand, 31332506 - 31332603
Alignment:
Q  108 cttataaatcatattacatttttatatgttgggatatcaagagaaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaatc 205  Q
    |||||||| |||||||  |||||||||||||||||||  | |||||||| ||||||| || |||| ||||||||||||||||||||||||| ||||||    
T  31332506 cttataaaccatattatttttttatatgttgggatatggacagaaacattattaaaaaaattcaacacaaattttatctaatgttgattaattgaatc 31332603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 131 - 352
Target Start/End: Original strand, 31431283 - 31431512
Alignment:
Q  131 atatgttgggatatcaagagaaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaatcacgtccctc--gctatgt-tcatcc 227  Q
    |||||||  |||||| | |||||||||||||||||||||||| ||||||||| |||||| |||||||  |||||| | || |||  | ||    ||||||    
T  31431283 atatgttaagatatccacagaaacatcattaaaagaactcaacacaaattttgtctaatcttgattatttgaatctcatctctcttgttacccctcatcc 31431382  T
Q  228 acaagaagtata----attttaagtggttcactgagaaacaattctattgatgcatatctaa-aattgaatcatatacatctataatgaatttttacaac 322  Q
    | ||||| ||||    |||||||||||||||   | ||||||||||||| || ||||||||| |||||||||||||||||||    |||||||||||||     
T  31431383 ataagaaatatatataattttaagtggttcatcaaaaaacaattctattaatacatatctaataattgaatcatatacatctgcgctgaatttttacaat 31431482  T
Q  323 attgtctcacttttttactcttcatctttt 352  Q
    ||||||||||| |||||  || ||||||||    
T  31431483 attgtctcactcttttatcctccatctttt 31431512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 272 - 388
Target Start/End: Complemental strand, 14180131 - 14180015
Alignment:
Q  272 tgatgcatatctaaaattgaatcatatacatctataatgaatttttacaacattgtctcacttttttactcttcatctttttctaggatacgtatctgtg 371  Q
    |||| ||||||| ||||||||||||||||||||  | |||||||| | ||||   |||||||||||||| |||||| |||||| | ||||||| ||||||    
T  14180131 tgatacatatcttaaattgaatcatatacatctccattgaattttcaaaacacattctcacttttttacccttcatttttttccaagatacgtctctgtg 14180032  T
Q  372 aagtatcttagaagtat 388  Q
    |||||||||| ||||||    
T  14180031 aagtatcttataagtat 14180015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 221 - 338
Target Start/End: Complemental strand, 18320844 - 18320728
Alignment:
Q  221 ttcatccacaagaagtataattttaagtggttcactgagaaacaattctattgatgcatatctaaaattgaatcatatacatctataatgaatttttaca 320  Q
    ||||||| |||||||||||||||| || | ||||   ||||||| ||||| | |||||||||||||||||||||||||||||||  | | || ||| |||    
T  18320844 ttcatccgcaagaagtataattttgagcgattcatcaagaaacatttctacttatgcatatctaaaattgaatcatatacatctccact-aaatttcaca 18320746  T
Q  321 acattgtctcactttttt 338  Q
    ||||||||||||||||||    
T  18320745 acattgtctcactttttt 18320728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 237 - 389
Target Start/End: Original strand, 9136732 - 9136883
Alignment:
Q  237 ataattttaagtggttcactgagaaacaattctattgatgcatatctaaaattgaatcatatacatctataatgaatttttacaacattgtctcactttt 336  Q
    |||||||||| ||||| |  || |||||||| || |||| | ||| | |||||||||||||||  |||  | |||||||| ||||||   ||||||||||    
T  9136732 ataattttaattggttaatcgaaaaacaattatagtgattcttattttaaattgaatcatatatgtctccattgaattttcacaacacaatctcactttt 9136831  T
Q  337 ttactcttcatctttttctaggatacgtatctgtgaagtatcttagaagtatc 389  Q
    |||| |||||| |||||| ||||||||| |||||||||||| ||| |||||||    
T  9136832 ttacccttcat-tttttccaggatacgtctctgtgaagtatgttataagtatc 9136883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 229 - 296
Target Start/End: Original strand, 11755701 - 11755768
Alignment:
Q  229 caagaagtataattttaagtggttcactgagaaacaattctattgatgcatatctaaaattgaatcat 296  Q
    ||||||||||||||||||| ||||||   ||||||||||||| | |||||||||||||||||||||||    
T  11755701 caagaagtataattttaagcggttcatcaagaaacaattctactaatgcatatctaaaattgaatcat 11755768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 131 - 205
Target Start/End: Complemental strand, 12006924 - 12006850
Alignment:
Q  131 atatgttgggatatcaagagaaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaatc 205  Q
    ||||||||||||||||||| || ||| ||||||||||||| | ||||||||| || |||||||||||  ||||||    
T  12006924 atatgttgggatatcaagaaaagcataattaaaagaactctacacaaattttgtccaatgttgattagttgaatc 12006850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 349 - 400
Target Start/End: Complemental strand, 18320732 - 18320681
Alignment:
Q  349 tttttctaggatacgtatctgtgaagtatcttagaagtatccttatgtatct 400  Q
    |||||||||||||||||| |||||||||||||| ||||||||| || |||||    
T  18320732 tttttctaggatacgtatatgtgaagtatcttataagtatcctgatatatct 18320681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 272 - 355
Target Start/End: Complemental strand, 37231859 - 37231776
Alignment:
Q  272 tgatgcatatctaaaattgaatcatatacatctataatgaatttttacaacattgtctcacttttttactcttcatctttttct 355  Q
    |||| ||||||| |||||||||| |||||||||  | |||||||| ||||||   |||||||||||||| |||||| |||||||    
T  37231859 tgattcatatcttaaattgaatcgtatacatctccattgaattttcacaacacaatctcacttttttacccttcatttttttct 37231776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 283 - 352
Target Start/End: Complemental strand, 26079507 - 26079438
Alignment:
Q  283 taaaattgaatcatatacatctataatgaatttttacaacattgtctcacttttttactcttcatctttt 352  Q
    |||||||||||  ||||||| |  | |||||||| |||| |||||||||||||| |||||||||||||||    
T  26079507 taaaattgaattttatacatttccactgaattttcacaatattgtctcacttttgtactcttcatctttt 26079438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 311 - 402
Target Start/End: Original strand, 16591534 - 16591624
Alignment:
Q  311 aatttttacaacattgtctcacttttttactcttcatctttttctaggatacgtatctgtgaagtatcttagaagtatccttatgtatctgt 402  Q
    |||||| ||||||||||||| ||||||||||||| || ||||| |||||||| ||  | |||||||| ||| ||||||| || |||| ||||    
T  16591534 aattttcacaacattgtctcgcttttttactcttaat-tttttataggatacatacttttgaagtattttataagtatctttgtgtaactgt 16591624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 349 - 391
Target Start/End: Original strand, 11755783 - 11755825
Alignment:
Q  349 tttttctaggatacgtatctgtgaagtatcttagaagtatcct 391  Q
    ||||||||||||| |||| |||||||||||||| |||||||||    
T  11755783 tttttctaggatatgtatatgtgaagtatcttataagtatcct 11755825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 158 - 192
Target Start/End: Original strand, 23877286 - 23877320
Alignment:
Q  158 attaaaagaactcaagacaaattttatctaatgtt 192  Q
    ||||||||||||||| |||||||||||||||||||    
T  23877286 attaaaagaactcaacacaaattttatctaatgtt 23877320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 326 - 388
Target Start/End: Complemental strand, 35536965 - 35536903
Alignment:
Q  326 gtctcacttttttactcttcatctttttctaggatacgtatctgtgaagtatcttagaagtat 388  Q
    |||||||||||||||  ||||| |||||| ||||| ||||| |||||| ||||||| ||||||    
T  35536965 gtctcacttttttaccattcatttttttcaaggatgcgtatatgtgaaatatcttaaaagtat 35536903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 128 - 198
Target Start/End: Complemental strand, 37232006 - 37231936
Alignment:
Q  128 tttatatgttgggatatcaagagaaacatcattaaaagaactcaagacaaattttatctaatgttgattaa 198  Q
    |||||||||| ||||||||| | |  ||||| ||||||||||||| ||||| ||| | |||||||||||||    
T  37232006 tttatatgttaggatatcaacaaatgcatcaataaaagaactcaaaacaaagtttgtttaatgttgattaa 37231936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0565 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 108 - 403
Target Start/End: Complemental strand, 8151 - 7856
Alignment:
Q  108 cttataaatcatattacatttttatatgttgggatatcaagagaaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaatcac 207  Q
    |||||||||| ||||||||||| |||||||||||| |  ||||||||||| |||||||||| ||| |||||||||||||||| |||||||||||||||||    
T  8151 cttataaatcgtattacattttcatatgttgggatgttgagagaaacatcgttaaaagaacccaacacaaattttatctaattttgattaactgaatcac 8052  T
Q  208 gtccctcgctatgttcatccacaagaagtataattttaagtggttcactgagaaacaattctattgatgcatatctaaaattgaatcatatacatctata 307  Q
     || ||||||| |||||||||||||||||||| |||| |||| ||||  ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  8051 atctctcgctacgttcatccacaagaagtatactttttagtgtttcatcgagaaacaattctattgatgcatatctaaaattgagtcatatacatctata 7952  T
Q  308 atgaatttttacaacattgtctcacttttttactcttcatctttttctaggatacgtatctgtgaagtatcttagaagtatccttatgtatctgtg 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  7951 atgaatttttacaacattgtctcacttttttactcttcatctttttctaggatacgtgtctgtgaagtatcttagaagtatccttgtgtatctgtg 7856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 216; Significance: 1e-118; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 108 - 403
Target Start/End: Original strand, 29230952 - 29231247
Alignment:
Q  108 cttataaatcatattacatttttatatgttgggatatcaagagaaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaatcac 207  Q
    |||||||| ||||||||||||| ||||||||||||||  ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  29230952 cttataaaccatattacattttcatatgttgggatattgagagaaacatcattaaaagaattcaacacaaattttatctaatgttgattaactgaatcac 29231051  T
Q  208 gtccctcgctatgttcatccacaagaagtataattttaagtggttcactgagaaacaattctattgatgcatatctaaaattgaatcatatacatctata 307  Q
     || |||||||  ||||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  29231052 atctctcgctacattcatccacaagaagtataattttaagtgtttcatcgagaaacaattctattgatgcatatctaaaattgagtcatatacatctata 29231151  T
Q  308 atgaatttttacaacattgtctcacttttttactcttcatctttttctaggatacgtatctgtgaagtatcttagaagtatccttatgtatctgtg 403  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| || ||||||| ||||| ||||    
T  29231152 atgaatttttacaacattgtctcacttttttagtcttcatctttttctaggatacgtgtctgtgaagtatcttaaaaatatccttgtgtatatgtg 29231247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 108 - 403
Target Start/End: Original strand, 19099923 - 19100202
Alignment:
Q  108 cttataaatcatattacatttttatatgttgggatatcaagagaaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaatcac 207  Q
    ||||||||| |||||||||||| ||||||||||||||| | |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  19099923 cttataaattatattacattttcatatgttgggatatcgaaagaaacatcattaaaaaaactcaacacaaattttatctaatgttgattaactgaatcac 19100022  T
Q  208 gtccctcgctatgttcatccacaagaagtataattttaagtggttcactgagaaacaattctattgatgcatatctaaaattgaatcatatacatctata 307  Q
     || |||| || |||||||||||||||||||||||||| ||| ||||  ||||||||||| |||||||||||            ||||||||||||||||    
T  19100023 atctctcgttacgttcatccacaagaagtataattttaggtgtttcatcgagaaacaattatattgatgcat------------atcatatacatctata 19100110  T
Q  308 atgaatttttacaacattgtctcacttttttactcttcatctttttctaggatacgtatctgtgaagtatcttagaagtatccttatgtatctgtg 403  Q
    |||||||||||||    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  19100111 atgaatttttaca----tgtctcacttttttactctttatctttttctaggatacgtatctgtgaagtatcttagaagtatccttgtgtatatgtg 19100202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 120 - 388
Target Start/End: Complemental strand, 3387517 - 3387249
Alignment:
Q  120 attacatttttatatgttgggatatcaagagaaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaatcacgtccctcgct-a 218  Q
    |||| ||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |  |||| | |    
T  3387517 attatattttcatatgttgggatatcgagagaaacatcattaaaagaactcaacacaaattttatctaatgttgattaagtgaatcacatatctcgatta 3387418  T
Q  219 tgttcatccacaagaagtataattttaagtggttcactgagaaacaattctattgatgcatatctaaaattgaatcatatacatctataatgaattttta 318  Q
      |||||  ||||||||||||| ||||||||||||| ||||||||||||||| |||||||||  ||||||||||  ||| || ||| || ||||||||||    
T  3387417 acttcatatacaagaagtataaatttaagtggttcattgagaaacaattctaatgatgcataaataaaattgaaatatacacgtctctactgaattttta 3387318  T
Q  319 caacattgtctcacttttttactcttcatctttttctaggatacgtatctgtgaagtatcttagaagtat 388  Q
    |||||||||||||||||||||| ||||||| ||||||||||||||||| || |||| |||||| ||||||    
T  3387317 caacattgtctcacttttttacccttcatc-ttttctaggatacgtatttgcgaagcatcttataagtat 3387249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 158 - 400
Target Start/End: Complemental strand, 26565155 - 26564911
Alignment:
Q  158 attaaaagaactcaagacaaattttatctaatgttgattaactgaatcacgtccctcgc--tatgttcatccacaagaagtataattttaagtggttcac 255  Q
    ||||||||||||||| | |||||||||||||| ||||||||||||||||| |||||| |  ||  ||||||||| | |||||||||||||||||||| |     
T  26565155 attaaaagaactcaacataaattttatctaatattgattaactgaatcacctccctctccttaccttcatccacgataagtataattttaagtggtttat 26565056  T
Q  256 tgagaaacaattctattgatgcatatctaaaattgaatcatatacatctataatgaatttttacaacattgtctcacttttttactcttcatctttttct 355  Q
      |||||||||| || |||| ||||||||||||||||||||||||||   || ||||| ||||||||||| |||||||||||||||||||||||||||||    
T  26565055 caagaaacaattatagtgatacatatctaaaattgaatcatatacattgctattgaatgtttacaacattatctcacttttttactcttcatctttttct 26564956  T
Q  356 aggatacgtatctgtgaagtatcttagaagtatccttatgtatct 400  Q
    ||||||  ||||| |||||||||||| ||||||| || |||||||    
T  26564955 aggatagatatctttgaagtatcttataagtatctttgtgtatct 26564911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 126 - 389
Target Start/End: Original strand, 31113888 - 31114152
Alignment:
Q  126 tttttatatgttgggatatcaagagaaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaatcacgtccctcgctatg---tt 222  Q
    |||||||||||| ||||||| ||||||  || |||||||||| |||| |||||||||||||||||||||||||| ||||||| || ||| |  |    ||    
T  31113888 tttttatatgtttggatatcgagagaagaataattaaaagaagtcaaaacaaattttatctaatgttgattaaccgaatcacctctctctcgttaccctt 31113987  T
Q  223 catccacaagaagtataattttaagtggttcactgagaaacaattctattgatgcatatctaaaattgaatcatatacatctataatgaatttttacaac 322  Q
    ||||||||||||||||||||||||||||||||| | ||||||||| || | ||||||||||||||||||||||||||||||| |  | |||||||  ||     
T  31113988 catccacaagaagtataattttaagtggttcaccgtgaaacaattttactaatgcatatctaaaattgaatcatatacatctctccttaattttt--aat 31114085  T
Q  323 attgtctcacttttttactcttcatctttttctaggatacgtatctgtgaagtatcttagaagtatc 389  Q
    |||||||||||||||||| |||||| ||||||||||||||  || || ||||||||||| |||||||    
T  31114086 attgtctcacttttttacccttcatttttttctaggatacacatatgcgaagtatcttataagtatc 31114152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 158 - 401
Target Start/End: Original strand, 2627881 - 2628131
Alignment:
Q  158 attaaaagaactcaagacaaattttatctaatgttgattaactgaatcacgtccctcgctatgtt------catccacaagaagtataattttaagtggt 251  Q
    ||||||| ||||||| ||||||||||| ||||||||||||| |||||||| || ||  || | ||      ||||||||  |||||||||||||||||||    
T  2627881 attaaaataactcaacacaaattttatttaatgttgattaattgaatcacctctctatctctctttaccttcatccacagaaagtataattttaagtggt 2627980  T
Q  252 tcactgagaaacaattctattgatgcatatctaaaattgaatcatatacatctataatgaatttttacaacattgtctcacttttttactcttcatc-tt 350  Q
    |||  || ||||||||||| | ||||||||||||||||||||||||||||||| || ||||| ||||||||| |||||||||||||||||||||||| ||    
T  2627981 tcatcgataaacaattctaattatgcatatctaaaattgaatcatatacatctctactgaatgtttacaacactgtctcacttttttactcttcatcttt 2628080  T
Q  351 tttctaggatacgtatctgtgaagtatcttagaagtatccttatgtatctg 401  Q
    |||||||||||| ||| |||||||||||||| ||||| |||| ||||||||    
T  2628081 tttctaggatacatatatgtgaagtatcttataagtaaccttgtgtatctg 2628131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 112 - 352
Target Start/End: Original strand, 32076413 - 32076655
Alignment:
Q  112 taaatcatattacatttttatatgttgggatatcaagagaaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaatcacgt-- 209  Q
    |||| ||||| | ||||| ||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||| |      
T  32076413 taaaccatatcatattttcatatgttgggatatcgagagaaacatcattaaaagaattcaacacaaattttatctaatgttgattaagtgaatcacttat 32076512  T
Q  210 ccctcgctatgttcatccacaagaagtataattttaagtggttcactgagaaacaattctattgatgcatatctaaaattgaatcatatacatctataat 309  Q
    | |||| ||  |||||  ||||||||||||| |||||||||||    ||||||||||| || |||||||||||||||||||||  ||| |||||| || |    
T  32076513 ctctcgttaacttcattgacaagaagtataaatttaagtggtttgtcgagaaacaattttaatgatgcatatctaaaattgaactatacacatctctact 32076612  T
Q  310 gaatttttacaacattgtctcacttttttactcttcatctttt 352  Q
    ||| ||||||||||||||||||||||||||| |||||||||||    
T  32076613 gaaattttacaacattgtctcacttttttacccttcatctttt 32076655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 158 - 392
Target Start/End: Complemental strand, 34511039 - 34510806
Alignment:
Q  158 attaaaagaactcaagacaaattttatctaatgttgattaactgaatcacgtccctcgctatgttcatccacaagaagtataattttaagtggttcactg 257  Q
    ||||||| |||||||  |||||| ||||| ||||||||||||| |||||| ||  ||  ||  |||||||| |||||||||||||||||||||||||  |    
T  34511039 attaaaataactcaactcaaattctatctcatgttgattaact-aatcacctctttcattactttcatccataagaagtataattttaagtggttcatcg 34510941  T
Q  258 agaaacaattctattgatgcatatctaaaattgaatcatatacatctataatgaatttttacaacattgtctcacttttttactcttcatctttttctag 357  Q
    | |||||||  || | ||||||||||||| || |||||||||||||| || ||| | ||||||| ||| ||||||||||||||||||||||||||||||     
T  34510940 aaaaacaatgttagttatgcatatctaaatttaaatcatatacatctctattgagtgtttacaatattatctcacttttttactcttcatctttttctac 34510841  T
Q  358 gatacgtatctgtgaagtatcttagaagtatcctt 392  Q
    ||||||||||| |||||||||||| ||||||||||    
T  34510840 gatacgtatctctgaagtatcttataagtatcctt 34510806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 108 - 398
Target Start/End: Complemental strand, 39935861 - 39935575
Alignment:
Q  108 cttataaatcatattacatttttatatgttgggatatcaagagaaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaatcac 207  Q
    |||||||| ||||||| ||||| ||||||||| ||||  |||||||||||||||||||||| ||| ||||||||||||| ||||||||||| || |||||    
T  39935861 cttataaaccatattatattttcatatgttggaatattgagagaaacatcattaaaagaacacaacacaaattttatctgatgttgattaattggatcac 39935762  T
Q  208 gtccctcgc--tatgttcatccacaagaagtataattttaagtggttcactgagaaacaattctattgatgcatatctaaaattgaatcatatacatcta 305  Q
     || |||    ||  ||||||||| | |||||||| ||||||||||| |  ||||||||| |||| ||||| ||||||||||||||| |||    ||||     
T  39935761 atctctcagattaccttcatccactaaaagtataaatttaagtggtttatcgagaaacaactctaatgatgtatatctaaaattgaaccat----atctc 39935666  T
Q  306 taatgaatttttacaacattgtctcacttttttactcttcatctttttctaggatacgtatctgtgaagtatcttagaagtatccttatgtat 398  Q
    ||||||||||||||||||||||||||||||||||   |||||| |||||||| |||| ||||| | |||||||||| ||||||| || |||||    
T  39935665 taatgaatttttacaacattgtctcacttttttatctttcatc-ttttctagcatacatatctat-aagtatcttataagtatctttgtgtat 39935575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 133 - 386
Target Start/End: Complemental strand, 5836729 - 5836480
Alignment:
Q  133 atgttgggatatcaagagaaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaatcacgtccctcgctatgttcatccacaag 232  Q
    ||||| ||||||||| | || ||||||||||||||||||| ||||||||||||||||| ||||||| |||||| | || |||| ||  || || ||  ||    
T  5836729 atgttaggatatcaacataagcatcattaaaagaactcaacacaaattttatctaatggtgattaattgaatctcctctctcgttacctttatacattag 5836630  T
Q  233 aagtataattttaagtggttcactgagaaacaattctattgatgcatatctaaaattgaatcatatacatctataatgaatttttacaacattgtctcac 332  Q
       |||||||||||||||||||  ||||||||||| ||  ||| ||||| ||||||||||||||||||||||  | |||||||| |||||||||||||||    
T  5836629 ---tataattttaagtggttcatcgagaaacaattataccgatacatatataaaattgaatcatatacatcttcactgaattttcacaacattgtctcac 5836533  T
Q  333 ttttttactcttcatctttttctaggatacgtatctgtgaagtatcttagaagt 386  Q
     |||  || ||||||  |||||||| |||||||||| |||||||||||| ||||    
T  5836532 ctttgcacccttcat-attttctagaatacgtatctctgaagtatcttataagt 5836480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 158 - 331
Target Start/End: Complemental strand, 8229489 - 8229316
Alignment:
Q  158 attaaaagaactcaagacaaattttatctaatgttgattaactgaatcacgtccctcgctatgttcatccacaagaagtataattttaagtggttcactg 257  Q
    ||||||| ||||||| |||||||||||||||||||||||||| ||||||| || | |  ||  ||  ||||| |||||||| |||||||||| |||| ||    
T  8229489 attaaaaaaactcaacacaaattttatctaatgttgattaaccgaatcacctctcgcattacctttgtccacgagaagtatgattttaagtgattcattg 8229390  T
Q  258 agaaacaattctattgatgcatatctaaaattgaatcatatacatctataatgaatttttacaacattgtctca 331  Q
    ||||||||||||| |||||||||||||||| | |||||||||||||| || ||||| |||||||||||||||||    
T  8229389 agaaacaattctagtgatgcatatctaaaactaaatcatatacatctctattgaatgtttacaacattgtctca 8229316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 169 - 400
Target Start/End: Complemental strand, 7057287 - 7057059
Alignment:
Q  169 tcaagacaaattttatctaatgttgattaactgaatcacgtccctcgctatgttcatccacaagaagtataattttaagtggttcactgagaaacaattc 268  Q
    |||| |||||||||||| |||||||||||| ||||||||||   ||| ||  |||||| |  |||| ||||||||||||| |||||  |||| ||||||     
T  7057287 tcaacacaaattttatccaatgttgattaattgaatcacgtatttcgttaccttcatctattagaaatataattttaagttgttcatcgagacacaatta 7057188  T
Q  269 tattgatgcatatctaaaattgaatcatatacatctataatgaatttttacaacattgtctcacttttttactcttcatctttttctaggatacgtatct 368  Q
    || |||| ||||| ||||  |||||||||||||||| || ||||||| ||||||||||||||||| |||||| |||||  |||||||||||||| ||| |    
T  7057187 tactgatccatatgtaaatgtgaatcatatacatctctactgaatttctacaacattgtctcact-ttttacccttca--tttttctaggatacatatat 7057091  T
Q  369 gtgaagtatcttagaagtatccttatgtatct 400  Q
    |||||| |||||| |||||||||| |||||||    
T  7057090 gtgaagcatcttataagtatccttgtgtatct 7057059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 242 - 397
Target Start/End: Complemental strand, 27925673 - 27925519
Alignment:
Q  242 tttaagtggttcactgagaaacaattctattgatgcatatctaaaattgaatcatatacatctataatgaatttttacaacattgtctcacttttttact 341  Q
    |||||||||||||  |||||||||||||| ||||| |||||||||||||||||||| | |||| |  ||||||| ||||||||||||||| ||||||||     
T  27925673 tttaagtggttcatcgagaaacaattctactgatgaatatctaaaattgaatcatagatatctctgctgaatttctacaacattgtctcatttttttaca 27925574  T
Q  342 cttcatctttttctaggatacgtatctgtgaagtatcttagaagtatccttatgta 397  Q
    ||||||| ||||||||||||||||| |||||||||||||  |||| ||||| ||||    
T  27925573 cttcatc-ttttctaggatacgtatatgtgaagtatcttgtaagtgtccttgtgta 27925519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 109 - 381
Target Start/End: Original strand, 31210725 - 31211007
Alignment:
Q  109 ttataaatcatattacatttttatatgttgggatat--caagagaaacatcattaaaagaactcaagacaaattttatct------------aatgttga 194  Q
    |||| |||||||||| | ||| ||||||||||||||  | |||||||||||||||||||||| ||| ||||||||||| |            ||||||||    
T  31210725 ttatgaatcatattatactttcatatgttgggatataccgagagaaacatcattaaaagaacacaacacaaattttatatgggtttttatataatgttga 31210824  T
Q  195 ttaactgaatcacgtccctcgctatgttcatccacaagaagtataattttaagtggttcactgagaaacaattctattgatgcatatctaaaattgaatc 294  Q
    |||| |||||||| || || | ||  |||||||| ||||| |||||||||| ||||||||  || |   ||||||| |||||||| | ||||||| ||||    
T  31210825 ttaattgaatcacctctcttgttaccttcatccataagaaatataattttaggtggttcatcgata---aattctactgatgcatgtttaaaattaaatc 31210921  T
Q  295 atatacatctataatgaatttttacaacattgtctcacttttttactcttcatctttttctaggatacgtatctgtgaagtatctta 381  Q
    |||||||| | || ||||||||||||||| ||||||| |||||||| ||||||  ||||||| ||||| ||||||||||||||||||    
T  31210922 atatacatttctactgaatttttacaacactgtctcatttttttacccttcat-attttctaagatacatatctgtgaagtatctta 31211007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 230 - 398
Target Start/End: Original strand, 13407257 - 13407424
Alignment:
Q  230 aagaagtataattttaagtggttcactgagaaacaattctattgatgcatatctaaaattgaatcatatacatctataatgaatttttacaacattgtct 329  Q
    ||||||||||||||||| |||||||  ||||||||||| || ||||| ||||||||||||||||||||||  | | || ||||||| |||||||||||||    
T  13407257 aagaagtataattttaactggttcatcgagaaacaattatactgatgtatatctaaaattgaatcatataagtttctactgaatttctacaacattgtct 13407356  T
Q  330 cacttttttactcttcatctttttctaggatacgtatctgtgaagtatcttagaagtatccttatgtat 398  Q
    || ||||||   ||||||| ||||||||||||||||| ||||| |||||||| || ||| ||| |||||    
T  13407357 caattttttctccttcatc-ttttctaggatacgtatttgtgacgtatcttataaatattcttgtgtat 13407424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 131 - 403
Target Start/End: Original strand, 16755974 - 16756245
Alignment:
Q  131 atatgttgggatatcaagagaaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaatcacgtccctc--gctatgttcatcca 228  Q
    |||| |||||||||||||| ||||||| ||||  ||||| || |||||| |  ||||||||||||||| |||||| | || |||  | ||  ||||||||    
T  16755974 atatattgggatatcaagataaacatcgttaa--gaacttaacacaaatctagtctaatgttgattaattgaatctcttctctcttgttaccttcatcca 16756071  T
Q  229 caagaagtataattttaagtggttcactgagaaacaattctattgatgcatatctaaaattgaatcatatacatctataatgaatttttacaacattgtc 328  Q
    |||||| ||||||||||||||||  |  || |||||||| || | |||||||||||||||||||||||||||||||    |||| |||  ||||||||||    
T  16756072 caagaattataattttaagtggtcaatcgataaacaattttactaatgcatatctaaaattgaatcatatacatctccgttgaactttcgcaacattgtc 16756171  T
Q  329 tcacttttttactcttcatctttttctaggatacgtatctgtgaagtatcttagaagtatccttatgtatctgtg 403  Q
    ||||||||||   ||||||  ||||||||||||| |||  || || ||||||| ||||||| |||||||| ||||    
T  16756172 tcacttttttgtccttcat-attttctaggatacatatacgtaaaatatcttataagtatcattatgtatttgtg 16756245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 158 - 286
Target Start/End: Original strand, 34764588 - 34764716
Alignment:
Q  158 attaaaagaactcaagacaaattttatctaatgttgattaactgaatcacgtccctcgctatgttcatccacaagaagtataattttaagtggttcactg 257  Q
    ||||||||||||||| ||||||||||| ||||||||||||| |||||||| || |||  ||  || |||||||||| || |||||||||||||||||  |    
T  34764588 attaaaagaactcaacacaaattttatttaatgttgattaattgaatcacctctctcattacctttatccacaagacgtgtaattttaagtggttcatcg 34764687  T
Q  258 agaaacaattctattgatgcatatctaaa 286  Q
    | ||||| ||||| |||||||||||||||    
T  34764688 aaaaacagttctagtgatgcatatctaaa 34764716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 261 - 402
Target Start/End: Complemental strand, 42990778 - 42990636
Alignment:
Q  261 aacaattctattgatgcatatctaaaattgaatcatatacatctataatgaatttttacaacattgtctca-cttttttactcttcatctttttctagga 359  Q
    ||||||| || |||| ||||||| ||||||||||||||||||||  | |||||||| ||||||  ||||||  |||||||| |||||| ||| || ||||    
T  42990778 aacaattatagtgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagtctcattttttttacacttcatttttgtccagga 42990679  T
Q  360 tacgtatctgtgaagtatcttagaagtatccttatgtatctgt 402  Q
    ||||| ||||| |||||||||| |||||||  | |||||||||    
T  42990678 tacgtctctgtaaagtatcttataagtatctgtgtgtatctgt 42990636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 110 - 198
Target Start/End: Original strand, 8802687 - 8802779
Alignment:
Q  110 tataaatcatattacatttttat----atgttgggatatcaagagaaacatcattaaaagaactcaagacaaattttatctaatgttgattaa 198  Q
    |||||||||||||| ||||||||    ||||| ||||||||| |||| |||||| |||||||||||| ||||||||| | |||| ||||||||    
T  8802687 tataaatcatattatatttttattcatatgttaggatatcaatagaagcatcatcaaaagaactcaacacaaattttgtttaatattgattaa 8802779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 160 - 366
Target Start/End: Complemental strand, 41368806 - 41368597
Alignment:
Q  160 taaaagaactcaagacaaattttatctaatgttgattaactgaatcac-----gtccctcgctatgttcatccacaagaagtataattttaagtggttca 254  Q
    |||||||||||||   ||||||||| |||||||||||||||||||| |      || |||  ||  ||||  ||||| |||||||||||| |||||||||    
T  41368806 taaaagaactcaacttaaattttatttaatgttgattaactgaatctcttttaatctctcattactttcactcacaaaaagtataatttttagtggttca 41368707  T
Q  255 ctgagaaacaattctattgatgcatatctaaaattgaatcatatacatctataatgaatttttacaacattgtctcacttttttactcttcatctttttc 354  Q
       ||||||| ||  |  ||||||||||||||||||||| |  ||||| |    |||||||| |||| ||||||||||||||||||  |||||| |||||    
T  41368706 tcaagaaacatttacaccgatgcatatctaaaattgaataacgtacat-ttcgctgaattttcacaagattgtctcacttttttacctttcatc-ttttc 41368609  T
Q  355 taggatacgtat 366  Q
    ||||||| ||||    
T  41368608 taggatatgtat 41368597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 377
Target Start/End: Complemental strand, 12118395 - 12118293
Alignment:
Q  272 tgatgcatatctaaaattgaatcatatacatctataatgaatttttacaacattgtctcacttttttactcttcatctttttctaggatacgtatctgtg 371  Q
    |||| ||||||| |||||||||||||||||| |  | |||||||| ||||||   ||  |||||||||| |||||| |||||| |||||||||||||||     
T  12118395 tgattcatatcttaaattgaatcatatacattttcattgaattttcacaacacattc--acttttttacccttcat-tttttccaggatacgtatctgta 12118299  T
Q  372 aagtat 377  Q
    ||||||    
T  12118298 aagtat 12118293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 289
Target Start/End: Complemental strand, 29675060 - 29674927
Alignment:
Q  158 attaaaagaactcaagacaaattttatctaatgttgattaactgaatcacgtccctcgc--tatgttcatccacaagaagtataattttaagtggttcac 255  Q
    |||||||||  |||| ||||||||||| |||  ||| |||| |||||||| || || ||  ||| |||||| | |||||||||||||||||||||||||     
T  29675060 attaaaagatatcaacacaaattttatttaagattggttaattgaatcacctctcttgcattatcttcatctataagaagtataattttaagtggttcat 29674961  T
Q  256 tgagaaacaattctattgatgcatatctaaaatt 289  Q
     |  ||| ||||||| | || |||||||||||||    
T  29674960 cgtaaaataattctactaatacatatctaaaatt 29674927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 283 - 352
Target Start/End: Original strand, 28470234 - 28470303
Alignment:
Q  283 taaaattgaatcatatacatctataatgaatttttacaacattgtctcacttttttactcttcatctttt 352  Q
    ||||||||||| |||||||||| || |||||||| | || ||| |||||||||||||| ||||| |||||    
T  28470234 taaaattgaattatatacatctctagtgaattttcataaaattatctcacttttttacccttcaactttt 28470303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 206
Target Start/End: Complemental strand, 27925729 - 27925692
Alignment:
Q  169 tcaagacaaattttatctaatgttgattaactgaatca 206  Q
    |||| ||||||||||||||||||||||||| |||||||    
T  27925729 tcaacacaaattttatctaatgttgattaattgaatca 27925692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 402
Target Start/End: Original strand, 28470331 - 28470383
Alignment:
Q  350 ttttctaggatacgtatctgtgaagtatcttagaagtatccttatgtatctgt 402  Q
    ||||||| || || ||| |||||||||||||| |||||||||| |||||||||    
T  28470331 ttttctaagacacatatatgtgaagtatcttataagtatccttgtgtatctgt 28470383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 108 - 381
Target Start/End: Complemental strand, 45774254 - 45773984
Alignment:
Q  108 cttataaatcatattacatttttatatgttgggatatcaagagaaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaatcac 207  Q
    |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  45774254 cttataaatcatattacatttttatacgttgggatatcaggagaaacatcattaaaagaactcaagacaaattttatcaaatgttggttaactgaatcac 45774155  T
Q  208 gtccctcgctatgttcatccacaagaagtataattttaagtggttcactgagaaacaattctattgatgcatatctaaaattgaatcatatacatctata 307  Q
     || ||||||| ||||||||| |||   |||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  45774154 ctctctcgctacgttcatccataag---tataattttaagtggttcatcgagaaacaattctattgatgtatatctaaaattgaatcatatacatctata 45774058  T
Q  308 atgaatttttacaacattgtctcacttttttactcttcatctttttctaggatacgtatctgtgaagtatctta 381  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  45774057 atgaatttttacaacattgtctcacttttttattcttcatctttttctaggatacgtatctgtgaagtatctta 45773984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 108 - 403
Target Start/End: Original strand, 19721581 - 19721876
Alignment:
Q  108 cttataaatcatattacatttttatatgttgggatatcaagagaaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaatcac 207  Q
    |||||||| ||||||| ||||| ||||||| ||||||  |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  19721581 cttataaaccatattaaattttcatatgttaggatattgagagaaacatcattaaaagaactcaacacaaattttatctaatgttgattaattgaatcac 19721680  T
Q  208 gtccctcgctatgttcatccacaagaagtataattttaagtggttcactgagaaacaattctattgatgcatatctaaaattgaatcatatacatctata 307  Q
     || ||||||| |||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||| |||||| | ||||||| |||||||    
T  19721681 atctctcgctacgttcatccacaagaagtataattttaagtgtttaattgagaaacaattctattgatgcatatccaaaattaagtcatatatatctata 19721780  T
Q  308 atgaatttttacaacattgtctcacttttttactcttcatctttttctaggatacgtatctgtgaagtatcttagaagtatccttatgtatctgtg 403  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||| || ||||||||||    
T  19721781 atgaatttttacaacatcgtctcacttttttactcttcatctttttctaggatacgtgtatgtgaagtatcttagaaatatcattgtgtatctgtg 19721876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 108 - 403
Target Start/End: Complemental strand, 2295622 - 2295328
Alignment:
Q  108 cttataaatcatattacatttttatatgttgggatatcaagagaaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaatcac 207  Q
    |||||||| ||||||||||||| ||||||||||||||  ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||    
T  2295622 cttataaaccatattacattttcatatgttgggatattgagagaaacatcgttaaaagaactcaacacaaattttatctaatgttgattaactgaattac 2295523  T
Q  208 gtccctcgctatgttcatccacaagaagtataattttaagtggttcactgagaaacaattctattgatgcatatctaaaattgaatcatatacatctata 307  Q
     || ||||||| |||||||||||||||||||||||||||||| ||||  |||||||||||||||||||| |||||| ||||||| || ||||||||||||    
T  2295522 atctctcgctacgttcatccacaagaagtataattttaagtgtttcatcgagaaacaattctattgatgaatatcttaaattgagtcctatacatctata 2295423  T
Q  308 atgaatttttacaacattgtctcacttttttactcttcatctttttctaggatacgtatctgtgaagtatcttagaagtatccttatgtatctgtg 403  Q
    ||||||||||||||||||||||||  |||||| ||||||||||||| |||||||||| |||||||||||||||||||||||| || ||||||||||    
T  2295422 atgaatttttacaacattgtctca-atttttattcttcatctttttttaggatacgtgtctgtgaagtatcttagaagtatcattgtgtatctgtg 2295328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 117 - 403
Target Start/End: Original strand, 53018448 - 53018734
Alignment:
Q  117 catattacatttttatatgttgggatatcaagagaaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaatcacgtccctcgc 216  Q
    ||||||||||||| ||||||  ||| ||| |||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||| |  |||||    
T  53018448 catattacattttcatatgtcaggacatcgagagaaacatcattaaaagaactcaacataaattttatttaatgttgattaactgaatcacctatctcgc 53018547  T
Q  217 tatgttcatccacaagaagtataattttaagtggttcactgagaaacaattctattgatgcatatctaaaattgaatcatatacatctataatgaatttt 316  Q
    ||||||||||||||| |||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  53018548 tatgttcatccacaataagtataattttaactgattcattgagaaacaattctattgatgcatatctaaaattgaatcatatacagctagaatgaatttt 53018647  T
Q  317 tacaacattgtctcacttttttactcttcatctttttctaggatacgtatctgtgaagtatcttagaagtatccttatgtatctgtg 403  Q
    || || ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||| ||||    
T  53018648 taaaagattgtctcatttttttactcttcatctttttctaggatacgtatatgtgaagtatcttagatgtatccttgtgtatatgtg 53018734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 108 - 403
Target Start/End: Original strand, 15476620 - 15476915
Alignment:
Q  108 cttataaatcatattacatttttatatgttgggatatcaagagaaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaatcac 207  Q
    |||||||| ||||||||||||| ||| |||||| |||| ||| ||||||||||||||||||||||  |||||||||||||||||||||||| | ||||||    
T  15476620 cttataaaccatattacattttcataagttgggttatcgagaaaaacatcattaaaagaactcaacgcaaattttatctaatgttgattaattaaatcac 15476719  T
Q  208 gtccctcgctatgttcatccacaagaagtataattttaagtggttcactgag-aaacaattctattgatgcatatctaaaattgaatcatatacatctat 306  Q
     || ||||||| ||||||||| ||||| ||||||||||||||||||| | || ||||||||| ||| ||||||||||||||||||||| || ||||||||    
T  15476720 ttctctcgctacgttcatccataagaattataattttaagtggttca-tcagtaaacaattcaattaatgcatatctaaaattgaatcttacacatctat 15476818  T
Q  307 aatgaatttttacaacattgtctcacttttttactcttcatctttttctaggatacgtatctgtgaagtatcttagaagtatccttatgtatctgtg 403  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||    
T  15476819 aatgaattcttacaacattgtctcacctttttactcttcatctttttctaagatacgtatctttgaagtatcttagaagtatccttgtgtatctgtg 15476915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 109 - 389
Target Start/End: Original strand, 35103389 - 35103669
Alignment:
Q  109 ttataaatcatattacatttttatatgttgggatatcaagagaaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaatcacg 208  Q
    ||||||| ||||||| ||||| ||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||  ||||| ||||||     
T  35103389 ttataaaacatattatattttcatatgttgggatatcgagagaaacattattaaaagaactcaacacaaattttatctaatgttgtgtaactaaatcacc 35103488  T
Q  209 tccctcgctatgttcatccacaagaagtataattttaagtggttcactgagaaacaattctattgatgcatatctaaaattgaatcatatacatctataa 308  Q
    || ||||||| |||| ||||||||||||||||||||||||| ||||    ||| ||||| || ||||||||||||||||||||||||||||||| |||||    
T  35103489 tctctcgctacgttcttccacaagaagtataattttaagtgtttcatccggaatcaattataatgatgcatatctaaaattgaatcatatacatttataa 35103588  T
Q  309 tgaatttttacaacattgtctcacttttttactcttcatctttttctaggatacgtatctgtgaagtatcttagaagtatc 389  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||    
T  35103589 tgaatttttacaacattgtctcacttttttactcttcatgtttttctaggatacatatctatgaagtatcttagaagtatc 35103669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 176 - 389
Target Start/End: Complemental strand, 53586583 - 53586368
Alignment:
Q  176 aaattttatctaatgttgattaactgaatcacgtccctc--gctatgttcatccacaagaagtataattttaagtggttcactgagaaacaattctattg 273  Q
    |||||||||||||| ||||||||||||||||| || |||  | ||  ||||||||| |||||||||||||||||| |||||  ||||||||||| || ||    
T  53586583 aaattttatctaatattgattaactgaatcacctctctcttgttaccttcatccacgagaagtataattttaagtagttcatcgagaaacaattatagtg 53586484  T
Q  274 atgcatatctaaaattgaatcatatacatctataatgaatttttacaacattgtctcacttttttactcttcatctttttctaggatacgtatctgtgaa 373  Q
    |||||||||| |||||||||||||||||||| || ||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  53586483 atgcatatctgaaattgaatcatatacatctctattgaatgtttacaacattgtctcactattttacccttcatctttttctaggatacgtatctgtgaa 53586384  T
Q  374 gtatcttagaagtatc 389  Q
    |||||||| |||||||    
T  53586383 gtatcttataagtatc 53586368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 108 - 398
Target Start/End: Complemental strand, 27675692 - 27675397
Alignment:
Q  108 cttataaatcatattacatttttatatgttgggatatcaagagaaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaatcac 207  Q
    |||||||| ||||||| ||||| ||||||||||||||| ||| || ||||||||||||||||||| ||||||||||||| || || ||||||| ||||||    
T  27675692 cttataaaccatattatattttcatatgttgggatatcgagataagcatcattaaaagaactcaacacaaattttatctgatattaattaactaaatcac 27675593  T
Q  208 gtccctc--gctatgttcatccacaagaagtataattttaagtggttcact---gagaaacaattctattgatgcatatctaaaattgaatcatatacat 302  Q
     || ||   | ||  ||||||||||| ||||||| |||||||||||||| |   ||||||||||||||||||||||||||||||||||||||||||||||    
T  27675592 ctctcttttgttaccttcatccacaaaaagtata-ttttaagtggttcaatattgagaaacaattctattgatgcatatctaaaattgaatcatatacat 27675494  T
Q  303 ctataatgaatttttacaacattgtctcacttttttactcttca-tctttttctaggatacgtatctgtgaagtatcttagaagtatccttatgtat 398  Q
    || |  ||||| || |||||||||||||||| |||||| ||||| | |||||||||||||||||| |||||||| ||||| || | ||||| |||||    
T  27675493 ctctgctgaatcttcacaacattgtctcactattttacccttcattttttttctaggatacgtatatgtgaagtgtcttataaatgtccttgtgtat 27675397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 108 - 389
Target Start/End: Complemental strand, 40217811 - 40217526
Alignment:
Q  108 cttataaatcatattacatttttatatgttgggatatcaagagaaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaatcac 207  Q
    |||||||| ||||||| ||||| |||||||||||||||  |||||||||||||| || ||||||| |||||||||||||||||||| |||||||||||||    
T  40217811 cttataaaccatattatattttcatatgttgggatatcgcgagaaacatcattataa-aactcaacacaaattttatctaatgttgtttaactgaatcac 40217713  T
Q  208 gt--ccctcgctatgttcatccacaagaagtataa----ttttaagtggttcactgagaaacaattctattgatgcatatctaaaattgaatcatataca 301  Q
     |  | |||| ||  |||||||| || || || ||    ||||||||| ||  |  |||||||||||||  || |||||  |||||||||||||||||||    
T  40217712 atttctctcgttaccttcatccaaaaaaaataaaaatatttttaagtgtttatca-agaaacaattctaccgacgcatacataaaattgaatcatataca 40217614  T
Q  302 tctataatgaatttttacaacattgtctcacttttttactcttcatctttttctaggatacgtatctgtgaagtatcttagaagtatc 389  Q
    ||| || |||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||| || |||||||    
T  40217613 tctttactgaatttttataacattgtctcacttttttacccttcatctttttctaggatatgtatatgtgaagtatcatataagtatc 40217526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 151 - 388
Target Start/End: Complemental strand, 44987471 - 44987234
Alignment:
Q  151 aaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaatcacgtccct--cgctatgttcatccacaagaagtataattttaagt 248  Q
    ||||||||||||||||||||  |||||||||| | ||||||||||||| |||||| | || ||  || ||  ||||||||||||||||||||||||||||    
T  44987471 aaacatcattaaaagaactc--gacaaattttgtataatgttgattaattgaatctcttctctttcgttaccttcatccacaagaagtataattttaagt 44987374  T
Q  249 ggttcactgagaaacaattctattgatgcatatctaaaattgaatcatatacatctataatgaatttttacaacattgtctcactt-ttttactcttcat 347  Q
     ||||| |||||||||||||||  |||||||||||||||||||||||| |||||||  | ||||||||||||||||| |||||||| ||||||  |||||    
T  44987373 agttcattgagaaacaattctaccgatgcatatctaaaattgaatcatgtacatctcgagtgaatttttacaacattatctcactttttttacctttcat 44987274  T
Q  348 ctttttctaggatacgtatctgtgaagtatcttagaagtat 388  Q
    | ||||||||||||||||| ||||||  |||||| ||||||    
T  44987273 c-ttttctaggatacgtatttgtgaaacatcttataagtat 44987234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 121 - 249
Target Start/End: Original strand, 2242769 - 2242899
Alignment:
Q  121 ttacatttttatatgttgggatatcaagagaaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaatcacgtccctc--gcta 218  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||  || |||  ||||    
T  2242769 ttacattttcatatgttgggatatcgagagaaacatcattaaaagaactcaacacaaattttatctaatattgattaactgaatcatctctctcttgcta 2242868  T
Q  219 tgttcatccacaagaagtataattttaagtg 249  Q
    |||||||| ||||||||||||||||||||||    
T  2242869 tgttcatctacaagaagtataattttaagtg 2242899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 158 - 353
Target Start/End: Complemental strand, 6008403 - 6008208
Alignment:
Q  158 attaaaagaactcaagacaaattttatctaatgttgattaactgaatcacgtccctcgctatgttcatccacaagaagtataattttaagtggttcactg 257  Q
    ||||||||||||||| ||||||||||| ||||||| |||||||||||||| || |||| ||  || |||||||||||||||||||||||||||||||  |    
T  6008403 attaaaagaactcaacacaaattttatttaatgtttattaactgaatcacctctctcgttacttttatccacaagaagtataattttaagtggttcatcg 6008304  T
Q  258 agaaacaattctattgatgcatatctaaaattgaatcatatacatctataatgaatttttacaacattgtctcacttttttactcttcatcttttt 353  Q
    ||||||||||||| | || |||||||| ||||||||||||| | ||| |  | ||| ||||  | |||| ||||||||||||||| ||||||||||    
T  6008303 agaaacaattctagttatacatatctataattgaatcatatccctctctcctaaatgtttaacaaattgcctcacttttttactcctcatcttttt 6008208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 235 - 390
Target Start/End: Original strand, 10037865 - 10038019
Alignment:
Q  235 gtataattttaagtggttcactgagaaacaattctattgatgcatatctaaaattgaatcatatacatctataatgaatttttacaacattgtctcactt 334  Q
    |||| |||||||||||||||  ||||||||| |||| |||||||||||||||||||||||||||||||||  | ||||||||  ||||||||||||||||    
T  10037865 gtattattttaagtggttcatcgagaaacaaatctactgatgcatatctaaaattgaatcatatacatctccattgaattttcgcaacattgtctcactt 10037964  T
Q  335 ttttactcttcatctttttctaggatacgtatctgtgaagtatcttagaagtatcc 390  Q
    |||||| ||||||| ||||||||||||| ||| |||||| ||||||| || |||||    
T  10037965 ttttacccttcatc-ttttctaggatacatatatgtgaaatatcttataattatcc 10038019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 141 - 388
Target Start/End: Complemental strand, 4776007 - 4775760
Alignment:
Q  141 atatcaagagaaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaatcacgtcc--ctcgctatgttcatccacaagaagtat 238  Q
    ||||||| | || ||||||| ||||||||||| ||||||||| |||||||  |||||||| |||| | ||   |||||||  ||||||||||| ||||||    
T  4776007 atatcaacataagcatcattgaaagaactcaacacaaattttgtctaatgccgattaactaaatctcctctttctcgctaacttcatccacaataagtat 4775908  T
Q  239 aattttaagtggttcactgagaaacaattctattgatgcatatctaaaattgaatcatatacatctataatgaatttttacaacattgtctcactttttt 338  Q
    |||||||||||| | |  |||||||||||   |||||||||||||||||||| ||||||||||| |  | | |||| | |||||||||||||||||||||    
T  4775907 aattttaagtggattatcgagaaacaattactttgatgcatatctaaaattg-atcatatacatttccactaaattatcacaacattgtctcactttttt 4775809  T
Q  339 actcttcatctttttctaggatacgtatctgtgaagtatcttagaagtat 388  Q
    || ||||||| ||||||||||||  ||| ||||||| |||||| ||||||    
T  4775808 acccttcatc-ttttctaggatatatatttgtgaagcatcttataagtat 4775760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 169 - 400
Target Start/End: Complemental strand, 24917714 - 24917493
Alignment:
Q  169 tcaagacaaattttatctaatgttgattaactgaatcacgtccctcgc--tatgttcatccacaagaagtataattttaagtggttcactgagaaacaat 266  Q
    |||| |||||||||||| || ||||||||| |||||||  || ||| |  ||  |||||||| |||||| ||||||||||||||||||  ||||||||||    
T  24917714 tcaacacaaattttatccaacgttgattaattgaatcatctctctctcattaccttcatccataagaagaataattttaagtggttcatcgagaaacaat 24917615  T
Q  267 tctattgatgcatatctaaaattgaatcatatacatctataatgaatttttacaacattgtctcacttttttactcttcatctttttctaggatacgtat 366  Q
    |||| | ||| ||||||||||||||||| |  |||||| ||           |||||| ||||||||||||| | ||||||||||| |||||||||||||    
T  24917614 tctactaatgtatatctaaaattgaatctttaacatctcta-----------caacatcgtctcacttttttccccttcatctttt-ctaggatacgtat 24917527  T
Q  367 ctgtgaagtatcttagaagtatccttatgtatct 400  Q
    ||||||| ||||||| |||||||||| |||||||    
T  24917526 ctgtgaaatatcttataagtatccttgtgtatct 24917493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 108 - 294
Target Start/End: Original strand, 7208396 - 7208583
Alignment:
Q  108 cttataaatcatattacatttttatatgttgggatatcaagagaaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaatcac 207  Q
    |||||||| ||||||| ||||| ||| || |||||||| ||||||||||||||||||| |||||| | || |||||||||| ||||||||||| ||| ||    
T  7208396 cttataaaccatattatatttt-atacgtagggatatcgagagaaacatcattaaaaggactcaacaaaatttttatctaaagttgattaactaaattac 7208494  T
Q  208 gtccctc--gctatgttcatccacaagaagtataattttaagtggttcactgagaaacaattctattgatgcatatctaaaattgaatc 294  Q
     || |||  | |   ||||||||||||||||||||||| |||||||| |  || |||||||||||||||||||  ||| ||||||||||    
T  7208495 ttctctcttgttgacttcatccacaagaagtataatttcaagtggtttatcgaaaaacaattctattgatgcacgtctgaaattgaatc 7208583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 239 - 403
Target Start/End: Original strand, 47922951 - 47923116
Alignment:
Q  239 aattttaagtggttcactgagaaacaattctattgatgcatatctaaaattgaatcatatacatctataatgaatttttacaacattgtctcactttttt 338  Q
    |||||||| |||||||   |||||||||| ||||||||| ||||||||||||||||||||  |||| ||  || ||||||||||||| | ||||||| ||    
T  47922951 aattttaactggttcatcaagaaacaattttattgatgcgtatctaaaattgaatcatatggatctctacagagtttttacaacattatgtcactttgtt 47923050  T
Q  339 actcttca-tctttttctaggatacgtatctgtgaagtatcttagaagtatccttatgtatctgtg 403  Q
    |||||||| | ||||| || |||| |||  |||||||||||||||||||||| || ||||||||||    
T  47923051 actcttcattttttttttaagatatgtaaatgtgaagtatcttagaagtatcattgtgtatctgtg 47923116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 158 - 292
Target Start/End: Complemental strand, 1052505 - 1052368
Alignment:
Q  158 attaaaagaactcaagacaaattttatctaatgttgattaactgaatc-acgtccctcgc--tatgttcatccacaagaagtataattttaagtggttca 254  Q
    ||||||||||||||| |||||||||||||||||||||||||||  ||| || || ||| |  ||  |||||||||||||| ||||||||||||||||| |    
T  1052505 attaaaagaactcaacacaaattttatctaatgttgattaactagatccacctctctctcgttaccttcatccacaagaaatataattttaagtggttaa 1052406  T
Q  255 ctgagaaacaattctattgatgcatatctaaaattgaa 292  Q
      |||||||||||||| |||||||||| ||||||||||    
T  1052405 tcgagaaacaattctagtgatgcatatgtaaaattgaa 1052368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 288 - 378
Target Start/End: Original strand, 2242914 - 2243004
Alignment:
Q  288 ttgaatcatatacatctataatgaatttttacaacattgtctcacttttttactcttcatctttttctaggatacgtatctgtgaagtatc 378  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||| |||| |||||||  ||| |||||||||||    
T  2242914 ttgaatcatatacatctataataaatttttataacattgtctcacttttttactgttcatcattttttaggatatatatatgtgaagtatc 2243004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 287 - 381
Target Start/End: Original strand, 53014846 - 53014936
Alignment:
Q  287 attgaatcatatacatctataatgaatttttacaacattgtctcacttttttactcttcatctttttctaggatacgtatctgtgaagtatctta 381  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |    ||||| |||||||||||| ||||||||||||||    
T  53014846 attgagtcatatacatctataatgaatttttacaacattgtctcacttttttaatcat----tttttttaggatacgtatttgtgaagtatctta 53014936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 131 - 389
Target Start/End: Original strand, 35823493 - 35823742
Alignment:
Q  131 atatgttgggatatcaagagaaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaatcacgtccctcgc--tatgttcatcca 228  Q
    ||||||| ||||||||| ||||   ||||||||||||||||| ||||||||| | ||||||||||||| |||||| | || ||| |  ||  ||||||||    
T  35823493 atatgttaggatatcaatagaagtgtcattaaaagaactcaacacaaattttgtataatgttgattaattgaatctcttctctctcgttaacttcatcca 35823592  T
Q  229 caagaagtataattttaagtggttcactgagaaacaattctattgatgcatatctaaaattgaatcatatacatctataatgaatttttacaacattgtc 328  Q
    |||| |          || ||||| |  |||||||||||||| | || ||||||||||||||||| |||||||| |  |||   |||| |||||||||||    
T  35823593 caagta----------aaatggtttatcgagaaacaattctactaattcatatctaaaattgaattatatacatttccaatattttttcacaacattgtc 35823682  T
Q  329 tcacttttttactcttcatctttttctaggatacgtatctgtgaagtatcttagaagtatc 389  Q
    ||||||| |||| ||||||| ||||||| |||| | |||| |||||||||||| |||||||    
T  35823683 tcactttcttacccttcatc-ttttctacgataggcatctttgaagtatcttataagtatc 35823742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 317 - 401
Target Start/End: Complemental strand, 24913890 - 24913807
Alignment:
Q  317 tacaacattgtctcacttttttactcttcatctttttctaggatacgtatctgtgaagtatcttagaagtatccttatgtatctg 401  Q
    |||||||| ||||||||||||| | ||||||||||| |||||||||||||||||||| ||||||| |||||||||| ||||||||    
T  24913890 tacaacatcgtctcacttttttccccttcatctttt-ctaggatacgtatctgtgaaatatcttataagtatccttgtgtatctg 24913807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 240 - 403
Target Start/End: Complemental strand, 23241962 - 23241801
Alignment:
Q  240 attttaagtggttcactgagaaacaattctattgatgcatatctaaaattgaatcatatacatctataatgaatttttacaacattgtctcactttttta 339  Q
    ||||||||||||||||||| |||||||||||   |   ||||||||||| ||| ||||| |||||  |  ||||||||| |||||| ||| |||||||||    
T  23241962 attttaagtggttcactgaaaaacaattctacaaaattatatctaaaatcgaaacatatgcatctccatcgaatttttataacattatcttactttttta 23241863  T
Q  340 ctcttcatctttttctaggatacgtatctgtgaagtatcttagaagtatccttatgtatctgtg 403  Q
    | || |||||||| |||| ||||||| |||| ||||||| || |||||||||||||||| ||||    
T  23241862 cact-catctttt-ctagaatacgtaactgtaaagtatcatataagtatccttatgtatttgtg 23241801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 283 - 403
Target Start/End: Complemental strand, 45661911 - 45661792
Alignment:
Q  283 taaaattgaatcatatacatctataatgaatttttacaacattgtctcacttttttactcttcatctttttctaggatacgtatctgtgaagtatcttag 382  Q
    |||||||||||||||||| |    | |||||||| ||||||||||||||||||||||||||||||| |||| |||||||  ||||| ||||||||| ||     
T  45661911 taaaattgaatcatatacgttcccactgaattttcacaacattgtctcacttttttactcttcatc-ttttataggatagatatctttgaagtatcgtaa 45661813  T
Q  383 aagtatccttatgtatctgtg 403  Q
    ||||||| || ||||| ||||    
T  45661812 aagtatcattgtgtatatgtg 45661792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 242 - 352
Target Start/End: Original strand, 28102017 - 28102126
Alignment:
Q  242 tttaagtggttcactgagaaacaattctattgatgcatatctaaaattgaatcatatacatctataatgaatttttacaacattgtctcacttttttact 341  Q
    |||||||||||||  ||||||||||| || | || ||||| ||||||||||| ||||||||||  | |||||||| | ||||| |||||| ||||||||     
T  28102017 tttaagtggttcatcgagaaacaattttacttattcatatataaaattgaataatatacatctcaactgaattttcataacatcgtctca-ttttttacc 28102115  T
Q  342 cttcatctttt 352  Q
    |||||||||||    
T  28102116 cttcatctttt 28102126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 131 - 196
Target Start/End: Original strand, 25059434 - 25059499
Alignment:
Q  131 atatgttgggatatcaagagaaacatcattaaaagaactcaagacaaattttatctaatgttgatt 196  Q
    ||||||| | ||||||| | ||||||||| |||||||||||| |||||||||||||||||||||||    
T  25059434 atatgttagtatatcaacataaacatcatcaaaagaactcaacacaaattttatctaatgttgatt 25059499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 324 - 388
Target Start/End: Original strand, 7208592 - 7208656
Alignment:
Q  324 ttgtctcacttttttactcttcatctttttctaggatacgtatctgtgaagtatcttagaagtat 388  Q
    ||||||||||| ||||   ||||||||||||||||||| ||||||||||||||||||| ||||||    
T  7208592 ttgtctcacttgtttatctttcatctttttctaggatatgtatctgtgaagtatcttataagtat 7208656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 262 - 389
Target Start/End: Original strand, 43770594 - 43770722
Alignment:
Q  262 acaattctattgatgcatatctaaaattgaatcatatacatctataatgaatttttacaacattgtctcacttttttactcttca-tctttttctaggat 360  Q
    |||||| || |||| ||||||| ||||||||||||||||||||  | |||||||| ||||||  ||||||| ||||||| ||| | | |||||| | | |    
T  43770594 acaattgtagtgattcatatcttaaattgaatcatatacatcttcattgaattttcacaacacagtctcacatttttaccctttattttttttccaagtt 43770693  T
Q  361 acgtatctgtgaagtatcttagaagtatc 389  Q
    |||| |||||||| ||||||| |||||||    
T  43770694 acgtctctgtgaaatatcttataagtatc 43770722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 117 - 183
Target Start/End: Original strand, 47922891 - 47922957
Alignment:
Q  117 catattacatttttatatgttgggatatcaagagaaacatcattaaaagaactcaagacaaatttta 183  Q
    ||||||| ||| | ||||||||||||||| |||||| | ||||||||||||||||| ||||||||||    
T  47922891 catattatattatcatatgttgggatatcgagagaagcgtcattaaaagaactcaacacaaatttta 47922957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 260 - 390
Target Start/End: Original strand, 22198899 - 22199029
Alignment:
Q  260 aaacaattctattgatgcatatctaaaattgaatcatatacatctataatgaatttttacaacattgtctcacttttttactcttcatctttttctagga 359  Q
    |||||||| || |||| | | ||| ||||||||||||||||||||  | | |||||||||||||    ||||||||||||| ||| |  ||||| |  ||    
T  22198899 aaacaattatagtgattcgtgtcttaaattgaatcatatacatcttcatttaatttttacaacacaacctcacttttttaccctttagtttttttttcga 22198998  T
Q  360 tacgtatctgtgaagtatcttagaagtatcc 390  Q
    ||||| ||||| |||||||||| ||||||||    
T  22198999 tacgtctctgtaaagtatcttataagtatcc 22199029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 283 - 337
Target Start/End: Complemental strand, 21619630 - 21619576
Alignment:
Q  283 taaaattgaatcatatacatctataatgaatttttacaacattgtctcacttttt 337  Q
    ||||||||||||||||||||||  | |||||||| ||||  ||||||||||||||    
T  21619630 taaaattgaatcatatacatcttcattgaattttcacaaagttgtctcacttttt 21619576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 352
Target Start/End: Original strand, 4110266 - 4110307
Alignment:
Q  311 aatttttacaacattgtctcacttttttactcttcatctttt 352  Q
    |||||| ||||||||||  |||||||||||||||||||||||    
T  4110266 aattttcacaacattgtaccacttttttactcttcatctttt 4110307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 108 - 403
Target Start/End: Original strand, 2032229 - 2032526
Alignment:
Q  108 cttataaatcatattacatttttatatgttgggatatcaagagaaacatcattaaaa-gaactcaagacaaattttatctaatgttgattaactgaatca 206  Q
    |||||||| ||||||||||||| ||||||| ||||||  |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |    
T  2032229 cttataaaccatattacattttcatatgttaggatattgagagaaacatcattaaaaagaactcaacacaaattttatctaatgttgattaactgaataa 2032328  T
Q  207 cgtccctcgctatgttcatccacaagaagtataattttaagtggttca-ctgagaaacaattctattgatgcatatctaaaattgaatcatatacatcta 305  Q
    | || ||||||| |||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||| ||||||||||| |    
T  2032329 catctctcgctacgttcatccacaagaagtataattttaagtgtttcatccgagaaacaattctattgatgcatatctaaaattgagtcatatacatcaa 2032428  T
Q  306 taatgaatttttacaacattgtctcacttttttactcttcatctttttctaggatacgtatctgtgaagtatcttagaagtatccttatgtatctgtg 403  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||| ||||| ||||    
T  2032429 taatgaatttttacaatattgtctcacttttttactcttcacctttttctaggatacatgtctgtgaagtatcttagaagtatccttgtgtatatgtg 2032526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 108 - 399
Target Start/End: Original strand, 687957 - 688245
Alignment:
Q  108 cttataaatcatattacatttttatatgttgggatatcaagagaaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaatcac 207  Q
    |||||||| ||||||||||||| ||||||| ||||||| |||||||||||||||||||||||| | |||||||||||||||||   ||||||||||||||    
T  687957 cttataaaccatattacattttcatatgttaggatatcgagagaaacatcattaaaagaactcgacacaaattttatctaatg---attaactgaatcac 688053  T
Q  208 gtccctcgctatgttcatccacaagaagtataattttaagtggttcactgagaaacaattctattgatgcatatctaaaattgaatcatatacatctata 307  Q
     |  || ||||  ||||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  688054 ctttcttgctacattcatccacaagaagtataattttaagtggttcatcgagaaacaattatattgatgcatatctaaaattgaataatatacatctata 688153  T
Q  308 atgaatttttacaacattgtctcacttttttactcttcatctttttctaggatacgtatctgtgaagtatcttagaagtatccttatgtatc 399  Q
    ||||||||||||| |||||||||| |||||||||||||||||||||||  |||||||||  |||||||||||||||||||||||| ||||||    
T  688154 atgaatttttacagcattgtctcatttttttactcttcatctttttctttgatacgtatacgtgaagtatcttagaagtatccttgtgtatc 688245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 108 - 403
Target Start/End: Original strand, 32340151 - 32340444
Alignment:
Q  108 cttataaatcatattacatttttatatgttgggatatcaagagaaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaatcac 207  Q
    |||||||||| ||||| ||||| ||||||||||||||| |||||| |||||| |||||||||||| |||||||||||||||||||||||| |||||| ||    
T  32340151 cttataaatcgtattatattttcatatgttgggatatcgagagaatcatcatcaaaagaactcaacacaaattttatctaatgttgattagctgaattac 32340250  T
Q  208 gtccctcgctatgttcatccacaagaagtataattttaagtggttcactgagaaacaattctattgatgcatatctaaaattgaatcatatacatctata 307  Q
     || || | ||  ||||| | |||||||||||||||||| |||||||  || |||||||||||||||||||||| | ||||||||| |||||||||| ||    
T  32340251 ctctcttgttaccttcattcccaagaagtataattttaaatggttcatcgaaaaacaattctattgatgcatatatgaaattgaattatatacatcttta 32340350  T
Q  308 atgaatttttacaacattgtctcacttttttactcttcatctttttctaggatacgtatctgtgaagtatcttagaagtatccttatgtatctgtg 403  Q
     |||| ||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||| ||| ||| ||||||||||    
T  32340351 ctgaa-ttttacaacattgtctcacttttttacccttcatctttttctaggatacatatatgtgaagtatcttagaattat-cttgtgtatctgtg 32340444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 158 - 401
Target Start/End: Original strand, 2988051 - 2988295
Alignment:
Q  158 attaaaagaactcaagacaaattttatctaatgttgattaactgaatcacgtccctcgc--tatgttcatccacaagaagtataattttaagtggttcac 255  Q
    ||||||||||||||| ||| || ||||||||| ||||||||||||||||  || ||| |  ||  ||| ||||||| || |||||||||||||||||||     
T  2988051 attaaaagaactcaacacatatattatctaatattgattaactgaatcagctctctctcgttaccttcttccacaaaaaatataattttaagtggttcat 2988150  T
Q  256 tgagaaacaattctattgatgcatatctaaaattgaatcatatacatctataatgaatttttacaacattgtctcacttttttactcttcatctttttct 355  Q
     ||||||||||| || ||||||||||||||||||||||||||||||||| || ||||| |||| |||||| ||| || ||||||||||||||||||||||    
T  2988151 cgagaaacaattttagtgatgcatatctaaaattgaatcatatacatctctactgaatgtttataacattatctgac-tttttactcttcatctttttct 2988249  T
Q  356 aggatacgtatctgtgaagtatcttagaagtatccttatgtatctg 401  Q
    ||||||||||| |||||| ||||||| ||||||| || ||||||||    
T  2988250 aggatacgtatttgtgaactatcttataagtatcattgtgtatctg 2988295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 156 - 379
Target Start/End: Complemental strand, 10229647 - 10229422
Alignment:
Q  156 tcattaaaagaactcaagacaaattttatctaatgttgattaactgaatcacgtccctcgc--tatgttcatccacaagaagtataattttaagtggttc 253  Q
    ||||||||| |||||||   ||||||||||||||||||||||||| |||||| || ||| |  ||  ||  | |||||||||||||||||||||||||||    
T  10229647 tcattaaaataactcaacctaaattttatctaatgttgattaactaaatcacctcactctcgttacatttgttcacaagaagtataattttaagtggttc 10229548  T
Q  254 actgagaaacaattctattgatgcatatctaaaattgaatcatatacatctataatgaatttttacaacattgtctcacttttttactcttcatcttttt 353  Q
    |   | ||||||||||| | ||||||||||| ||||||||||||||||||| ||  |||| ||| |||||||||||||||||||||||||||||||||||    
T  10229547 atcaaaaaacaattctagttatgcatatctataattgaatcatatacatctctatcgaatgtttgcaacattgtctcacttttttactcttcatcttttt 10229448  T
Q  354 ctaggatacgtatctgtgaagtatct 379  Q
      ||||||||||| |||||| |||||    
T  10229447 gaaggatacgtatatgtgaaatatct 10229422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 131 - 389
Target Start/End: Complemental strand, 8486168 - 8485910
Alignment:
Q  131 atatgttgggatatcaagagaaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaatcacgtccctcgc--tatgttcatcca 228  Q
    |||||||| ||||||||||||| ||||||||||| || || |  |||||||| ||||||||||||||  |||||| | || ||| |  ||  | |||||     
T  8486168 atatgttgagatatcaagagaagcatcattaaaataattctacgcaaattttgtctaatgttgattagttgaatctcatctctctcgttacctccatccg 8486069  T
Q  229 caagaagtataattttaagtggttcactgagaaacaattctattgatgcatatctaaaattgaatcatatacatctataatgaatttttacaacattgtc 328  Q
    ||||||||||||||||||| ||||||   ||||||||||||| |||||||||||||||||||||||||||||||||| | |||| ||| |||||| | ||    
T  8486068 caagaagtataattttaagcggttcatcaagaaacaattctactgatgcatatctaaaattgaatcatatacatctacactgaa-tttcacaacactatc 8485970  T
Q  329 tcacttttttactcttcatctttttctaggatacgtatctgtgaagtatcttagaagtatc 389  Q
    ||| |||||||| ||| || |||||||||||||||||| |||||||| ||||| |||||||    
T  8485969 tcaattttttaccctttat-tttttctaggatacgtatatgtgaagtgtcttataagtatc 8485910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 131 - 389
Target Start/End: Original strand, 12311922 - 12312179
Alignment:
Q  131 atatgttgggatatcaagagaaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaatcacgtccctcgc--tatgttcatcca 228  Q
    ||||||||||||||||| |||| |||||| |||||||||||| |||| |||| | ||||||||||||| |||||  | || ||| |  ||  ||||||||    
T  12311922 atatgttgggatatcaatagaagcatcatcaaaagaactcaacacaagttttgtttaatgttgattaattgaatatcctctctctcgttaacttcatcca 12312021  T
Q  229 caagaagtataattttaagtggttcactgagaaacaattctattgatgcatatctaaaattgaatcatatacatctataatgaatttttacaacattgtc 328  Q
    |||    |||||||| |||||||| |  |||||||||||||||||||||||||||||||||||||  ||||||| |  | | | |||| |||||||||||    
T  12312022 caac---tataatttaaagtggttgatcgagaaacaattctattgatgcatatctaaaattgaattgtatacatttccacttatttttcacaacattgtc 12312118  T
Q  329 -tcacttttttactcttcatctttttctaggatacgtatctgtgaagtatcttagaagtatc 389  Q
     | ||||| |||| |||||| |||||||||||||| ||||| |||||||||||| |||||||    
T  12312119 tttactttcttacccttcat-tttttctaggatacatatctttgaagtatcttataagtatc 12312179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 169 - 338
Target Start/End: Complemental strand, 30928500 - 30928331
Alignment:
Q  169 tcaagacaaattttatctaatgttgattaactgaatcacgtccctcgctatgttcatccacaagaagtataattttaagtggttcactgagaaacaattc 268  Q
    |||| |||||||||||  |||||||||||| |||||||  || |||| ||  ||||| || |||||||||||||||||||||||||   ||||||||||     
T  30928500 tcaacacaaattttattcaatgttgattaattgaatcatctctctcgttaccttcattcataagaagtataattttaagtggttcatcaagaaacaatta 30928401  T
Q  269 tattgatgcatatctaaaattgaatcatatacatctataatgaatttttacaacattgtctcactttttt 338  Q
    || || ||||||| |||||||||||||||||||||| || | ||||| |||||||||||||| |||||||    
T  30928400 tactggtgcatatataaaattgaatcatatacatctctacttaatttctacaacattgtctcgctttttt 30928331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 131 - 302
Target Start/End: Original strand, 12283617 - 12283790
Alignment:
Q  131 atatgttgggatatcaagagaaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaatcac--gtccctcgctatgttcatcca 228  Q
    ||||||||||||||||| |||| |||||||||||||| |||| |||||||||   ||||||||||||| |||||| |   || |||| ||  ||||||||    
T  12283617 atatgttgggatatcaatagaagcatcattaaaagaattcaacacaaattttgattaatgttgattaattgaatctcctctctctcgttaacttcatcca 12283716  T
Q  229 caagaagtataattttaagtggttcactgagaaacaattctattgatgcatatctaaaattgaatcatatacat 302  Q
    ||| ||||||||||| ||||||||||   ||||||||||||| |||||||||||||| | |||||  |||||||    
T  12283717 caaaaagtataatttaaagtggttcatccagaaacaattctactgatgcatatctaatactgaattgtatacat 12283790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 221 - 321
Target Start/End: Complemental strand, 10567414 - 10567321
Alignment:
Q  221 ttcatccacaagaagtataattttaagtggttcactgagaaacaattctattgatgcatatctaaaattgaatcatatacatctataatgaatttttaca 320  Q
    ||||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||    
T  10567414 ttcatccacaagaagtataattttaagtgtttcatcgagaaacaattctattgatgcatatctaaa-------catatacatctataatgaatttttaca 10567322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 277 - 403
Target Start/End: Original strand, 22297370 - 22297495
Alignment:
Q  277 catatctaaaattgaatcatatacatctataatgaatttttacaacattgtctcacttttttactcttcatctttttctaggatacgtatctgtgaagta 376  Q
    ||||||||||||| | |||||||||||| || |||||||||||||| ||||||||||||||| | |||||||||||| || ||||||| |||||||||||    
T  22297370 catatctaaaattaagtcatatacatctctattgaatttttacaacgttgtctcactttttt-cccttcatctttttttatgatacgtttctgtgaagta 22297468  T
Q  377 tcttagaagtatccttatgtatctgtg 403  Q
      ||| |||||||||| ||||| ||||    
T  22297469 cgttacaagtatccttgtgtatatgtg 22297495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 158 - 322
Target Start/End: Complemental strand, 7435019 - 7434853
Alignment:
Q  158 attaaaagaactcaagacaaattttatctaatgttgattaactgaatcacgtccctcgc--tatgttcatccacaagaagtataattttaagtggttcac 255  Q
    ||||||||||||||| |||||| ||||||| ||||||||||||||||||| || ||| |  ||  ||  |||| || ||||||||||||||||||| ||     
T  7435019 attaaaagaactcaacacaaatgttatctagtgttgattaactgaatcacctctctctcgttacctttgtccataaaaagtataattttaagtggtccat 7434920  T
Q  256 tgagaaacaattctattgatgcatatctaaaattgaatcatatacatctataatgaatttttacaac 322  Q
     |||||||||||||  | | |||||||||| ||||||||||||| |||| || ||||| ||||||||    
T  7434919 cgagaaacaattctcgtaacgcatatctaagattgaatcatatagatctctattgaatgtttacaac 7434853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 112 - 207
Target Start/End: Original strand, 22297248 - 22297343
Alignment:
Q  112 taaatcatattacatttttatatgttgggatatcaagagaaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaatcac 207  Q
    |||| ||||||| ||||| ||||||||||||||||||| || |||  |||||||||||||| | ||||||||||||||||||||||||||||||||    
T  22297248 taaaccatattatattttcatatgttgggatatcaagataagcattgttaaaagaactcaacataaattttatctaatgttgattaactgaatcac 22297343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 159 - 352
Target Start/End: Complemental strand, 22054080 - 22053889
Alignment:
Q  159 ttaaaagaactcaagacaaattttatctaatgttgattaactgaatcacgtccctcgctatgttcatccacaagaagtataattttaagtggttcactga 258  Q
    |||||||||||||| |   |||| |||||| ||||||||| ||||| |  || |||  ||  |||||||| | ||||||||| |||| |||||||| | |    
T  22054080 ttaaaagaactcaacatgcatttcatctaaagttgattaattgaatgatctctctcattaccttcatccagaggaagtataaattta-gtggttcatt-a 22053983  T
Q  259 gaaacaattctattgatgcatatctaaaattgaatcatatacatctataatgaatttttacaacattgtctcacttttttactcttcatctttt 352  Q
    |||||||||| | |||||| |||||||||||||| | || |||||| || ||||||||||||||| | |||||||||||||| |||||||||||    
T  22053982 gaaacaattccaatgatgcgtatctaaaattgaaccgtacacatctctactgaatttttacaacactatctcacttttttacccttcatctttt 22053889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 131 - 182
Target Start/End: Original strand, 26546013 - 26546063
Alignment:
Q  131 atatgttgggatatcaagagaaacatcattaaaagaactcaagacaaatttt 182  Q
    ||||||| ||||||||| ||||||||||| ||||||||||||||||||||||    
T  26546013 atatgttaggatatcaacagaaacatcat-aaaagaactcaagacaaatttt 26546063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 260 - 388
Target Start/End: Original strand, 6724502 - 6724636
Alignment:
Q  260 aaacaattctattgatgcatatctaaaattgaatcatatacatctataatg-aatttttacaacattgtctcacttttttactcttcatcttt-----tt 353  Q
    |||||||| || |||| ||||||| ||||||||||||||||||||  | || |||||| ||||||  | |||||||||||||  ||||| |||     ||    
T  6724502 aaacaattatactgattcatatcttaaattgaatcatatacatctccattgaaattttcacaacacagcctcacttttttaccattcattttttttcctt 6724601  T
Q  354 ctaggatacgtatctgtgaagtatcttagaagtat 388  Q
    | ||||||||| | |||||||||||||| ||||||    
T  6724602 ccaggatacgtctatgtgaagtatcttataagtat 6724636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 333 - 390
Target Start/End: Original strand, 17533522 - 17533579
Alignment:
Q  333 ttttttactcttcatctttttctaggatacgtatctgtgaagtatcttagaagtatcc 390  Q
    ||||||||  ||||| |||||||| ||||||| |||||||||||||||| ||||||||    
T  17533522 ttttttacatttcatttttttctaagatacgtctctgtgaagtatcttataagtatcc 17533579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 287 - 353
Target Start/End: Original strand, 26546168 - 26546234
Alignment:
Q  287 attgaatcatatacatctataatgaatttttacaacattgtctcacttttttactcttcatcttttt 353  Q
    |||||| ||||||||||| || | ||| || |||||||| |||||||||||||| |||||| |||||    
T  26546168 attgaaccatatacatctttattaaatcttcacaacattatctcacttttttacccttcattttttt 26546234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 108 - 378
Target Start/End: Original strand, 42794648 - 42794918
Alignment:
Q  108 cttataaatcatattacatttttatatgttgggatatcaagagaaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaatcac 207  Q
    |||||||| ||||||||||||| ||||||||||||||  |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||     
T  42794648 cttataaaccatattacattttcatatgttgggatattgagagaaacatcattaaaagaactcaacacaaattttatctaatgttgattaactaaatcat 42794747  T
Q  208 gtccctcgctatgttcatccacaagaagtataattttaagtggttcactgagaaacaattctattgatgcatatctaaaattgaatcatatacatctata 307  Q
     |  ||||||| |||||||||||| ||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  42794748 atttctcgctacgttcatccacaataagtataattttaagtgtttcatcgagaaacaattctattgatgcatatctaaaattgagtcacatacatctata 42794847  T
Q  308 atgaatttttacaacattgtctcacttttttactcttcatctttttctaggatacgtatctgtgaagtatc 378  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  42794848 atgaatttttacaacattgtctcacttttttactcttcatctttttctaggatacgtgtttgtgaagtatc 42794918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 109 - 378
Target Start/End: Complemental strand, 41324135 - 41323867
Alignment:
Q  109 ttataaatcatattacatttttatatgttgggatatcaagagaaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaatcacg 208  Q
    ||||||| ||||||| ||||| ||||||||||||||| ||||||  |||||||||||||||||| ||||||| ||||||||||| || |||||||||||     
T  41324135 ttataaaccatattatattttcatatgttgggatatcgagagaagtatcattaaaagaactcaacacaaattgtatctaatgtt-ataaactgaatcacc 41324037  T
Q  209 tccctcgctatgttcatccacaagaagtataattttaagtggttcactgagaaacaattctattgatgcatatctaaaattgaatcatatacatctataa 308  Q
    || |||| ||  ||||||||||||||||||||||||||| ||||||  ||||||||||| || ||||||||||||||||||||||||||||||||| ||     
T  41324036 tctctcgttaccttcatccacaagaagtataattttaagcggttcatcgagaaacaattttactgatgcatatctaaaattgaatcatatacatctctac 41323937  T
Q  309 tgaatttttacaacattgtctcacttttttactcttcatctttttctaggatacgtatctgtgaagtatc 378  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||||| ||| |||||||||||    
T  41323936 tgaatttttacaacattgtctcacttttttaccgttcatctttttctaggatacatatatgtgaagtatc 41323867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 165 - 403
Target Start/End: Complemental strand, 7018028 - 7017788
Alignment:
Q  165 gaactcaagacaaattttatctaatgttgattaactgaatcacgtccctcgc--tatgttcatccacaagaagtataattttaagtggttcactgagaaa 262  Q
    |||||||| |||||||||||||||||||||||||| |||| || || ||| |  ||  |||||||||||||||||||||||||||||||| |  ||||||    
T  7018028 gaactcaacacaaattttatctaatgttgattaaccgaattacctctctctcgttaccttcatccacaagaagtataattttaagtggtttatcgagaaa 7017929  T
Q  263 caattctattgatgcatatctaaaattgaatcatatacatctataatgaatttttacaacattgtctcacttttttactcttcatctttttctaggatac 362  Q
    ||||||||   ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||| ||    
T  7017928 caattctacccatgcatatctaaaattgaatcatatacatctctactgaatttttacaacattgtctcacttttttacccttcatctttttctaggaaac 7017829  T
Q  363 gtatctgtgaagtatcttagaagtatccttatgtatctgtg 403  Q
     ||| |||||||||||||| || |||| || ||||| ||||    
T  7017828 atatatgtgaagtatcttataaatatctttgtgtatttgtg 7017788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 108 - 389
Target Start/End: Complemental strand, 30485841 - 30485559
Alignment:
Q  108 cttataaatcatattacatttttatatgttgggatatcaagagaaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaatcac 207  Q
    ||||||||  |||||| ||||| ||||||||||||||  | |||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||    
T  30485841 cttataaactatattatattttcatatgttgggatatagaaagaaacatcattaaaagaactcaacacaaactttatctaatgttgattaattgaatcac 30485742  T
Q  208 gtccctcgc--tatgttcatccacaagaagtataattttaagtggttcactgagaaacaattctattgatgcatatctaaaattgaatcatatacatcta 305  Q
     |  ||| |  ||  |||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||| || | ||||||     
T  30485741 ctttctctcattaccttcatccacaagaagtataaatttaagtggttcaccgagaaacaattctaatgatgcatatctaaaattgaaccacacacatctc 30485642  T
Q  306 taatgaatttttacaacattgtctcacttttttactcttcatctttttctaggatacgtatctgtgaagtatcttagaagtatc 389  Q
    || |||||||||| | |||| ||||||||||||||  |||||| |||||||| |||| ||| |||||| ||||||| |||||||    
T  30485641 tactgaatttttagagcattatctcacttttttacctttcatc-ttttctagaatacatatttgtgaaatatcttataagtatc 30485559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 108 - 327
Target Start/End: Original strand, 30382682 - 30382903
Alignment:
Q  108 cttataaatcatattacatttttatatgttgggatatcaagagaaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaatcac 207  Q
    |||||||| ||||||| ||||| ||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  30382682 cttataaaccatattatattttcatatgttgggatatcgagagaaacatcattaaaagaattcaatacaaattttatctaatgttgattaactgaatcac 30382781  T
Q  208 gtccctcgc--tatgttcatccacaagaagtataattttaagtggttcactgagaaacaattctattgatgcatatctaaaattgaatcatatacatcta 305  Q
     || ||| |  ||  |||||||||||||||||||| |||||||||||||  |||||||||||||| ||||| |||||||||| ||||  ||| ||||||     
T  30382782 atctctctcattacattcatccacaagaagtataaatttaagtggttcatcgagaaacaattctaatgatgtatatctaaaagtgaacaatacacatctc 30382881  T
Q  306 taatgaatttttacaacattgt 327  Q
    ||||||||||||||||||||||    
T  30382882 taatgaatttttacaacattgt 30382903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 122 - 400
Target Start/End: Complemental strand, 17328947 - 17328663
Alignment:
Q  122 tacatttttatatgttgggatatcaagagaaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaatcacgtccctcgctatg- 220  Q
    |||||||| |||| || ||||||| ||||||  || ||||||||||||||| ||||||||||| |||||||||||||||||||||  || ||| || |      
T  17328947 tacattttcatatctttggatatcgagagaagaataattaaaagaactcaacacaaattttatttaatgttgattaactgaatcatctctctctctttcg 17328848  T
Q  221 -----ttcatccacaagaagtataattttaagtggttcactgagaaacaattctattgatgcatatctaaaattgaatcatatacatctataatgaattt 315  Q
         |||||||||||||||||||| |||||||||||| | | |||||||||| | | ||||||||||||||||||||||||||||||| |  |||||||    
T  17328847 ttaccttcatccacaagaagtataactttaagtggttccccgtgaaacaattcgactaatgcatatctaaaattgaatcatatacatctctcctgaattt 17328748  T
Q  316 ttacaacattgtctcacttttttactcttcatctttttctaggatacgtatctgtgaagtatcttagaagtatccttatgtatct 400  Q
    ||||||| ||||||||||||| ||| ||||||||||| ||||||||| ||| |||||||||||||| ||||||| || |||||||    
T  17328747 ttacaaccttgtctcacttttctacgcttcatcttttcctaggatacatatatgtgaagtatcttataagtatcattgtgtatct 17328663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 179 - 401
Target Start/End: Original strand, 38221559 - 38221781
Alignment:
Q  179 ttttatctaatgttgattaactgaatcacgtccctcgctatgttcatccacaagaagtataattttaagtggttcactgagaaacaattctattgatgca 278  Q
    ||||||||||||||||| || |||||||| || |||| ||  ||  ||||||||||||||||||||||||| ||||   ||||||||||||| |||||||    
T  38221559 ttttatctaatgttgatcaattgaatcacctctctcgttacctttgtccacaagaagtataattttaagtgattcatcaagaaacaattctagtgatgca 38221658  T
Q  279 tatctaaaattgaatcatatacatctataatgaatttttacaacattgtctcacttttttactcttcatctttttctaggatacgtatctgtgaagtatc 378  Q
    |||| ||||||||||||||||||||| || ||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||    
T  38221659 tatccaaaattgaatcatatacatctctattgaatgtttacaacattgtctcactcttttactcttcatctttttctaggatacatatatgtgaagtatc 38221758  T
Q  379 ttagaagtatccttatgtatctg 401  Q
    ||  || ||||||| ||||||||    
T  38221759 ttgtaaatatccttgtgtatctg 38221781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 108 - 402
Target Start/End: Original strand, 37272784 - 37273078
Alignment:
Q  108 cttataaatcatattacatttttatatgttgggatatcaagagaaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaatcac 207  Q
    |||||||||| ||||| ||||  |||||| |||||||| ||| ||| |||||||||||||||||| | ||||||| |||||  ||||| |||| ||||||    
T  37272784 cttataaatcttattatatttc-atatgtagggatatcgagaaaaatatcattaaaagaactcaacataaattttgtctaagattgat-aactaaatcac 37272881  T
Q  208 gtccctcgc--tatgttcatccacaagaagtataattttaagtggttcactgagaaacaattctattgatgcatatctaaaattgaatcatatacatcta 305  Q
     |||||| |  ||  ||||||||| ||||||||||||||||||||||||  || |||||||| ||||||||||| ||||||||||||||||||||||||     
T  37272882 ctccctctcgttaccttcatccacgagaagtataattttaagtggttcatcgaaaaacaattttattgatgcatgtctaaaattgaatcatatacatctc 37272981  T
Q  306 taatgaatttttacaacattgtctcacttttttactcttcatctttttctaggatacgtatctgtgaagtatcttagaagtatccttatgtatctgt 402  Q
    || ||||||||||||||||||||| ||||||||||  ||||||||| | |||  ||| ||| |||||| ||||||| ||||||| || |||||||||    
T  37272982 tactgaatttttacaacattgtcttacttttttacctttcatctttgtttagattacatatatgtgaaatatcttacaagtatcattgtgtatctgt 37273078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 181 - 388
Target Start/End: Original strand, 11562673 - 11562877
Alignment:
Q  181 ttatctaatgttgattaactgaatcacgtccctcgctatgttcatccacaagaagtataattttaagtggttcactgagaaacaattctattgatgcata 280  Q
    ||||| |||||||||||| |||||||| || |||| ||| |||||| ||||||||||||||||||||||||| |  ||||||||||| |  |||| ||||    
T  11562673 ttatccaatgttgattaattgaatcacctctctcgttattttcatctacaagaagtataattttaagtggtttatcgagaaacaattgt--tgattcata 11562770  T
Q  281 tctaaaattgaatcatatacatctataatgaatttttacaacattgtctcacttttttactcttcatctttttctaggatacgtatctgtgaagtatctt 380  Q
    || |||||||||||||||| |||| || ||||||| |||||||||||||||||||||||| ||||||| |||||| | |||||||| |||||||||||||    
T  11562771 tccaaaattgaatcatatatatctctactgaatttctacaacattgtctcacttttttacccttcatc-ttttctcgaatacgtatttgtgaagtatctt 11562869  T
Q  381 agaagtat 388  Q
    | ||||||    
T  11562870 ataagtat 11562877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 169 - 403
Target Start/End: Complemental strand, 36467396 - 36467161
Alignment:
Q  169 tcaagacaaattttatctaatgttgattaactgaatcacgtccctcgc--tatgttcatccacaagaagtataattttaagtggttcactgagaaacaat 266  Q
    |||| |||||||||||||| |||||||||| |||||||| || ||| |  ||  ||||||||||||||  ||||||||||||||||||  ||||||||||    
T  36467396 tcaacacaaattttatctattgttgattaattgaatcacatctctctcattaccttcatccacaagaatcataattttaagtggttcatcgagaaacaat 36467297  T
Q  267 tctattgatgcatatctaaaattgaatcatatacatctataatgaatttttacaacattgtctcacttttttactcttcatctttttctaggatacgtat 366  Q
    | || | ||||||||||||||||||||||||||||| |  | ||||||||||||||||||||||||||| |||| | |||||  | |||||  ||| |||    
T  36467296 tttacttatgcatatctaaaattgaatcatatacatttcaactgaatttttacaacattgtctcactttcttacccgtcatc-atctctagtttacatat 36467198  T
Q  367 ctgtgaagtatcttagaagtatccttatgtatctgtg 403  Q
    ||||||||||||||| ||||||| || ||||||||||    
T  36467197 ctgtgaagtatcttataagtatctttgtgtatctgtg 36467161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 237 - 403
Target Start/End: Complemental strand, 35298555 - 35298388
Alignment:
Q  237 ataattttaagtggttcactgagaaacaattctattgatgcatatctaaaattgaatcatatacatctataatgaatttttacaacattgtctcactttt 336  Q
    ||||||||||||||||||  |||||| |||||||||||||||| ||||||||||||| |||||||||| || ||||||||||||||||||||||||||||    
T  35298555 ataattttaagtggttcatcgagaaataattctattgatgcatttctaaaattgaattatatacatctctactgaatttttacaacattgtctcactttt 35298456  T
Q  337 ttactcttcatc-tttttctaggatacgtatctgtgaagtatcttagaagtatccttatgtatctgtg 403  Q
    ||||  || ||| ||||||||| |||||||| |||||||||||||| || |||| || ||||||||||    
T  35298455 ttaccttttatcttttttctagaatacgtatatgtgaagtatcttataaatatctttgtgtatctgtg 35298388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 158 - 301
Target Start/End: Complemental strand, 40498821 - 40498676
Alignment:
Q  158 attaaaagaactcaagacaaattttatctaatgttgattaactgaatca--cgtccctcgctatgttcatccacaagaagtataattttaagtggttcac 255  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||    || |||| ||| |||||||| |||||||||||||||||||||||||     
T  40498821 attaaaagaactcaacacaaattttatctaatgttgattaactgaatcagctctctctcgttatcttcatccaaaagaagtataattttaagtggttcat 40498722  T
Q  256 tgagaaacaattctattgatgcatatctaaaattgaatcatataca 301  Q
     |||||||||||||| ||||||||||||||||||||||||||||||    
T  40498721 cgagaaacaattctagtgatgcatatctaaaattgaatcatataca 40498676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 158 - 401
Target Start/End: Complemental strand, 40364009 - 40363767
Alignment:
Q  158 attaaaagaactcaagacaaattttatctaatgttgattaactgaatcacgtccctcgctatgttcatccacaagaagtataattttaagtggttcactg 257  Q
    ||||||||||||||| ||| |||||||||||| | |||||| |||||||| |  |||| ||  ||| | ||||| |||||||||||||| |  ||||  |    
T  40364009 attaaaagaactcaacacacattttatctaatat-gattaattgaatcacctatctcgttacattccttcacaaaaagtataattttaaattattcatcg 40363911  T
Q  258 agaaacaattctattgatgcatatctaaaattgaatcatatacatctataatgaatttttacaacattgtctcacttttttactcttcatctttttctag 357  Q
    | |||||||  || ||||   ||||||||||||||||||| |||||| || ||||| |||||||||||||||||||||||| |||||  |||||||||||    
T  40363910 acaaacaatcatagtgatctgtatctaaaattgaatcatacacatctttactgaatgtttacaacattgtctcacttttttgctctttttctttttctag 40363811  T
Q  358 gatacgtatctgtgaagtatcttagaagtatccttatgtatctg 401  Q
    |||| ||||||||||||||| ||| ||||||| || ||||||||    
T  40363810 gataagtatctgtgaagtattttaaaagtatcattgtgtatctg 40363767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 261 - 403
Target Start/End: Complemental strand, 38140681 - 38140535
Alignment:
Q  261 aacaattctattgatgcatatctaaaattgaatcatatacatc----tataatgaatttttacaacattgtctcacttttttactcttcatctttttcta 356  Q
    ||||||| |||||||||||||||||||||||||||||||||||    ||||||||||| ||||||||||||||||| |||||||||||||||||||  ||    
T  38140681 aacaattatattgatgcatatctaaaattgaatcatatacatcaatctataatgaattcttacaacattgtctcacatttttactcttcatcttttctta 38140582  T
Q  357 ggatacgtatctgtgaagtatcttagaagtatccttatgtatctgtg 403  Q
    |||||||||| ||||||||||||| ||| |||| || ||||| ||||    
T  38140581 ggatacgtatatgtgaagtatcttggaaatatcattgtgtatgtgtg 38140535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 221 - 392
Target Start/End: Original strand, 16496782 - 16496953
Alignment:
Q  221 ttcatccacaagaagtataattttaagtggttcactgagaaacaattctattgatgcatatctaaaattgaatcatatacatctataatgaatttttaca 320  Q
    ||||||||||| || |||| ||||||||||||||  ||||||||||| || |||| || |||||||||||||||||||||||||  | |||||||| |||    
T  16496782 ttcatccacaaaaaatatacttttaagtggttcatcgagaaacaattttactgattcacatctaaaattgaatcatatacatcttcattgaattttcaca 16496881  T
Q  321 acattgtctcac-ttttttactcttcatctttttctaggatacgtatctgtgaagtatcttagaagtatcctt 392  Q
    |||||||| ||| |||||||||||| ||| ||||||||||||| ||| ||| ||||||||||  |||||||||    
T  16496882 acattgtcccactttttttactctttatc-ttttctaggatacatatatgttaagtatcttattagtatcctt 16496953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 264 - 400
Target Start/End: Complemental strand, 40498672 - 40498537
Alignment:
Q  264 aattctattgatgcatatctaaaattgaatcatatacatctataatgaatttttacaacattgtctcacttttttactcttcatctttttctaggatacg 363  Q
    ||||||| ||||||||||| ||| ||||||| ||||||||| || ||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  40498672 aattctagtgatgcatatcgaaa-ttgaatcgtatacatctctactgaatgtttacaacattgtctcacttttatactcttcatcttttcctaggatacg 40498574  T
Q  364 tatctgtgaagtatcttagaagtatccttatgtatct 400  Q
    ||| | |||||||||||| || ||||||| |||||||    
T  40498573 tatatatgaagtatcttataaatatccttgtgtatct 40498537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 108 - 261
Target Start/End: Complemental strand, 38140992 - 38140833
Alignment:
Q  108 cttataaatcatattacatttttatatgttgggatatcaagagaaacatcattaaaa-------gaactcaagacaaattttatctaatgttgattaact 200  Q
    |||||||| ||||||||||||| ||||||||||||||| ||| ||| ||||||||||       |||||||| ||||| |||||||||||||||||||||    
T  38140992 cttataaaccatattacattttcatatgttgggatatcgagaaaaatatcattaaaatttaaaagaactcaacacaaaatttatctaatgttgattaact 38140893  T
Q  201 gaatcacgtccctcgctatgttcatccacaagaagtataattttaagtggttcactgagaa 261  Q
    ||||||| || ||||||| ||||||||| ||||||||| || |||||||||||| ||||||    
T  38140892 gaatcacctctctcgctacgttcatccataagaagtat-atattaagtggttcattgagaa 38140833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 159 - 352
Target Start/End: Complemental strand, 44364465 - 44364274
Alignment:
Q  159 ttaaaagaactcaagacaaattttatctaatgttgattaactgaatcacgtccctcgctatgttcatccacaagaagtataattttaagtggttcactga 258  Q
    |||||||||||||| |   |||| |||||| ||||||||| ||||| |  || |||  ||  |||||||| | ||||||||| |||| |||||||| | |    
T  44364465 ttaaaagaactcaacatgcatttcatctaaagttgattaattgaatgatctctctcattaccttcatccagaggaagtataaattta-gtggttcatt-a 44364368  T
Q  259 gaaacaattctattgatgcatatctaaaattgaatcatatacatctataatgaatttttacaacattgtctcacttttttactcttcatctttt 352  Q
    |||||||||| | |||||| |||||||||||||| | || |||||| || ||||||||||||||| | |||||||||||||| |||||||||||    
T  44364367 gaaacaattccaatgatgcgtatctaaaattgaaccgtacacatctctactgaatttttacaacactatctcacttttttacccttcatctttt 44364274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 221 - 352
Target Start/End: Original strand, 38558636 - 38558765
Alignment:
Q  221 ttcatccacaagaagtataattttaagtggttcactgagaaacaattctattgatgcatatctaaaattgaatcatatacatctataatgaatttttaca 320  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||| || ||||  |||||||||||||||||  ||| ||||  ||| |||||| |||    
T  38558636 ttcatccacaagaagtgtaattttaagtggttcac-gagaaacaattatactgatatatatctaaaattgaatc-gatatatcttcaataaattttcaca 38558733  T
Q  321 acattgtctcacttttttactcttcatctttt 352  Q
    ||  ||||||||||||||||  ||||||||||    
T  38558734 actctgtctcacttttttacctttcatctttt 38558765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 108 - 206
Target Start/End: Complemental strand, 35306337 - 35306240
Alignment:
Q  108 cttataaatcatattacatttttatatgttgggatatcaagagaaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaatca 206  Q
    |||||||| ||||||| ||||| |||||| |||||||| ||||||| ||| ||||| |||||| | ||||||||||||||||||||||||||| |||||    
T  35306337 cttataaaccatattatattttcatatgtagggatatcgagagaaatatcgttaaa-gaactccacacaaattttatctaatgttgattaactaaatca 35306240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 284 - 378
Target Start/End: Complemental strand, 18561171 - 18561078
Alignment:
Q  284 aaaattgaatcatatacatctataatgaatttttacaacattgtctcacttttttactcttcatctttttctaggatacgtatctgtgaagtatc 378  Q
    ||||||||||||||||||| |  | |||||||| | ||||||||||||||||||||||||||||  |||| |||||||| ||||| |||||||||    
T  18561171 aaaattgaatcatatacatttccactgaattttcaaaacattgtctcacttttttactcttcat-gttttataggatacatatctttgaagtatc 18561078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 283 - 352
Target Start/End: Complemental strand, 21813044 - 21812975
Alignment:
Q  283 taaaattgaatcatatacatctataatgaatttttacaacattgtctcacttttttactcttcatctttt 352  Q
    |||||||||||||||| ||| |  | ||||||| ||||||||||||||||||||||||||||||||||||    
T  21813044 taaaattgaatcatattcatttccattgaatttatacaacattgtctcacttttttactcttcatctttt 21812975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 291 - 392
Target Start/End: Complemental strand, 35428829 - 35428729
Alignment:
Q  291 aatcatatacatctataatgaatttttacaacattgtctcacttttttactcttcatctttttctaggatacgtatctgtgaagtatcttagaagtatcc 390  Q
    ||||||||||||||  | |||||||| | | ||||||||||||||||||| ||||||| |||| || ||||||||| |||||||||||||  ||||||||    
T  35428829 aatcatatacatctccactgaattttcagatcattgtctcacttttttacccttcatc-ttttgtaagatacgtatgtgtgaagtatcttctaagtatcc 35428731  T
Q  391 tt 392  Q
    ||    
T  35428730 tt 35428729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 260 - 353
Target Start/End: Complemental strand, 3353209 - 3353116
Alignment:
Q  260 aaacaattctattgatgcatatctaaaattgaatcatatacatctataatgaatttttacaacattgtctcacttttttactcttcatcttttt 353  Q
    |||||||| || |||| ||||||| |||||||||||||||||| |  | | |||||| ||||||| |||||||||||| ||||||||| |||||    
T  3353209 aaacaattataatgattcatatcttaaattgaatcatatacatttccattaaattttcacaacatagtctcactttttgactcttcattttttt 3353116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 288 - 388
Target Start/End: Complemental strand, 30776744 - 30776645
Alignment:
Q  288 ttgaatcatatacatctataatgaatttttacaacattgtctcacttttttactcttcatctttttctaggatacgtatctgtgaagtatcttagaagta 387  Q
    |||||||||||||||||  | |||||||||| ||||  ||||||||||||||| |||||  ||| || ||||||| || ||||||||||||||| |||||    
T  30776744 ttgaatcatatacatctcgattgaatttttataacacagtctcacttttttacccttca-atttctcaaggatacttaactgtgaagtatcttataagta 30776646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 258 - 388
Target Start/End: Complemental strand, 2789001 - 2788872
Alignment:
Q  258 agaaacaattctattgatgcatatctaaaattgaatcatatacatctataatgaatttttacaacattgtctcacttttttactcttcatctttttctag 357  Q
    |||||||||| || | |||||||| ||||||||||| |||||||| |  | | || ||| |||| |||||||||||||||||   |||||| |||||||     
T  2789001 agaaacaattttactaatgcatatttaaaattgaatgatatacatttccattaaactttcacaatattgtctcacttttttaacattcatc-ttttctat 2788903  T
Q  358 gatacgtatctgtgaagtatcttagaagtat 388  Q
    |||| |||| ||||||||||| || ||||||    
T  2788902 gatatgtatgtgtgaagtatcatataagtat 2788872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 257 - 388
Target Start/End: Complemental strand, 26352689 - 26352561
Alignment:
Q  257 gagaaacaattctattgatgcatatctaaaattgaatcatatacatctataatgaatttttacaacattgtctcacttttttactcttcatctttttcta 356  Q
    ||||||||||| || |||  ||||||| ||||||||||||| ||||||  | |||||||| |||| |  | |||||||||||||  ||||   |||| ||    
T  26352689 gagaaacaattatagtgactcatatcttaaattgaatcatacacatctccattgaattttcacaaaacagactcacttttttacctttca---tttttta 26352593  T
Q  357 ggatacgtatctgtgaagtatcttagaagtat 388  Q
    |||||||| | |||||||||||||| ||||||    
T  26352592 ggatacgtttatgtgaagtatcttataagtat 26352561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 133 - 205
Target Start/End: Complemental strand, 40083161 - 40083089
Alignment:
Q  133 atgttgggatatcaagagaaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaatc 205  Q
    ||||| ||||||| | |||||||| ||||| ||||||||| |||||||||  |||||||||||||| ||||||    
T  40083161 atgttaggatatctacagaaacatgattaacagaactcaacacaaattttgcctaatgttgattaattgaatc 40083089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 260 - 381
Target Start/End: Original strand, 43355765 - 43355890
Alignment:
Q  260 aaacaattctattgatgcatatctaaaattgaatcatatacatctataatgaatttttacaacattgtctca---cttttttactcttcatctttttct- 355  Q
    |||||||| || |||| ||||||| || |||||||||||||||||  | |||||||| ||||||  ||||||    |||||||| |||||| ||||| |     
T  43355765 aaacaattatagtgattcatatcttaacttgaatcatatacatctccattgaattttcacaacacagtctcattttttttttacacttcatttttttttc 43355864  T
Q  356 aggatacgtatctgtgaagtatctta 381  Q
    ||||||||| ||| ||||||||||||    
T  43355865 aggatacgtctctatgaagtatctta 43355890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 140 - 205
Target Start/End: Complemental strand, 12599240 - 12599175
Alignment:
Q  140 gatatcaagagaaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaatc 205  Q
    |||||||| | ||| |||||||||||||| ||| |||||| || ||||||||||||||| ||||||    
T  12599240 gatatcaacaaaaaaatcattaaaagaacacaacacaaatgttgtctaatgttgattaattgaatc 12599175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 140 - 198
Target Start/End: Complemental strand, 11458030 - 11457972
Alignment:
Q  140 gatatcaagagaaacatcattaaaagaactcaagacaaattttatctaatgttgattaa 198  Q
    |||||||| | || ||||||||||| ||| ||| ||||||||| |||||||||||||||    
T  11458030 gatatcaacataagcatcattaaaataacgcaacacaaattttgtctaatgttgattaa 11457972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 160 - 188
Target Start/End: Complemental strand, 41952443 - 41952415
Alignment:
Q  160 taaaagaactcaagacaaattttatctaa 188  Q
    |||||||||||||||||||||||||||||    
T  41952443 taaaagaactcaagacaaattttatctaa 41952415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 108 - 392
Target Start/End: Original strand, 46979227 - 46979511
Alignment:
Q  108 cttataaatcatattacatttttatatgttgggatatcaagagaaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaatcac 207  Q
    |||||||| ||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||  |||||||||| | ||||||||||||| ||||||    
T  46979227 cttataaaccatattacattttcatatgttgcgatatcgagagaaacatcattaaaagaactcaacgcaaattttatgtgatgttgattaactaaatcac 46979326  T
Q  208 gtccctcgctatgttcatccacaagaagtataattttaagtggttcactgag-aaacaattctattgatgcatatctaaaattgaatcatatacatctat 306  Q
     || ||||||| |||||||||||||||||||||||||||||| |||| | || ||||||||||||| ||| ||||||||||||||||| |||||||||||    
T  46979327 ctctctcgctacgttcatccacaagaagtataattttaagtgattca-tcagtaaacaattctattaatgtatatctaaaattgaatcttatacatctat 46979425  T
Q  307 aatgaatttttacaacattgtctcacttttttactcttcatctttttctaggatacgtatctgtgaagtatcttagaagtatcctt 392  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  46979426 aatgaatttttacaacgttgtctcacttttttactcttcatctttttctaggatacgtatctttgaagtattttagaagtatcctt 46979511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 108 - 403
Target Start/End: Original strand, 7629071 - 7629364
Alignment:
Q  108 cttataaatcatattacatttttatatgttgggatatcaagagaaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaatcac 207  Q
    |||||||| ||||||||||||| ||||||||||||||   |||||||||||||| ||||| ||||  ||||||||||||| |||||||||||||||||||    
T  7629071 cttataaaccatattacattttaatatgttgggatattgggagaaacatcattacaagaaatcaatgcaaattttatctattgttgattaactgaatcac 7629170  T
Q  208 gtccctcgctatgttcatccacaagaagtataattttaagtggttcactgagaaacaattctattgatgcatatctaaaattgaatcatatacatctata 307  Q
     || |||||| || |||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||| ||||||||||||||     
T  7629171 atctctcgctgtggtcatccacaagaagtataattttaagtgtttcatcgagaaacaattctattgatgcatatctaaaattgagtcatatacatctatt 7629270  T
Q  308 atgaatttttacaacattgtctcacttttttactcttcatctttttctaggatacgtatctgtgaagtatcttagaagtatccttatgtatctgtg 403  Q
    ||||||||||||||||||||||||  |||||||| | ||||||||||||||||| |  ||||||||||||||||||||||||||| ||||| ||||    
T  7629271 atgaatttttacaacattgtctca--tttttactgtgcatctttttctaggatatgcttctgtgaagtatcttagaagtatccttgtgtatatgtg 7629364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 108 - 400
Target Start/End: Complemental strand, 29324332 - 29324037
Alignment:
Q  108 cttataaatcatattacatttttatatgttgggatatcaagagaaacatcattaaaagaac-tcaagacaaattttatctaatgttgattaactgaatca 206  Q
    ||||||||  |||||| ||||  ||||||||||||||| |||||||||||||||||| ||  |||| | ||||||||||||||||  ||||||| |||||    
T  29324332 cttataaacaatattatatttacatatgttgggatatcgagagaaacatcattaaaaaaaaatcaacataaattttatctaatgtgtattaacttaatca 29324233  T
Q  207 cgtccctcgc--tatgttcatccacaagaagtataattttaagtggttcactgagaaacaattctattgatgcatatctaaaattgaatcatatacatct 304  Q
    | || ||| |  ||  || ||||||||||| |||||||||||||||||||  ||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  29324232 cttctctctcgttacctttatccacaagaaatataattttaagtggttcatcgagaaacaattatattgatgcatatctaaaattgaatgatatacatct 29324133  T
Q  305 ataatgaatttttacaacattgtctcacttttttactcttcatctttttctaggatacgtatctgtgaagtatcttagaagtatccttatgtatct 400  Q
     || |||| ||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||  |||||||||| || |||||||    
T  29324132 ttattgaagttttacaacattgcctcacttttttactcttcatctttttttaggatacgtatttgtgaagtatagtagaagtatcattgtgtatct 29324037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 158 - 360
Target Start/End: Complemental strand, 45472797 - 45472595
Alignment:
Q  158 attaaaagaactcaagacaaattttatctaatgttgattaactgaatcacgtccctcgctatgttcatccacaagaagtataattttaagtggttcactg 257  Q
    ||||||||||| ||| |||||||||||||||||||||||||||||||||| || |||| ||  ||||||||||||||||||||||||| ||| ||||  |    
T  45472797 attaaaagaacccaacacaaattttatctaatgttgattaactgaatcacctctctcgttaccttcatccacaagaagtataattttacgtgattcatcg 45472698  T
Q  258 agaaacaattctattgatgcatatctaaaattgaatcatatacatctataatgaatttttacaacattgtctcacttttttactcttcatctttttctag 357  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||| ||||||||||||||||||||||| |||    
T  45472697 agaaacaattctagtgatgcatatctaaaattgaatcatatacatctctattgaatgtttacaacattgtctaacttttttactcttcatctttttatag 45472598  T
Q  358 gat 360  Q
    |||    
T  45472597 gat 45472595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 169 - 400
Target Start/End: Original strand, 27163964 - 27164193
Alignment:
Q  169 tcaagacaaattttatctaatgttgattaactgaatcacgtccctcgctatgttcatccacaagaagtataattttaagtggttcactgagaaacaattc 268  Q
    |||| |||||||||||  |||||||||||| |||||||| || |||| ||  |||||||| ||||||||||| |||||||||||||  |||||| ||||     
T  27163964 tcaacacaaattttattcaatgttgattaattgaatcacctctctcgttaccttcatccataagaagtataaatttaagtggttcatcgagaaataatta 27164063  T
Q  269 tattgatgcatatctaaaattgaatcatatacatctataatgaatttttacaacattgtctcacttttttactcttcatctttttctaggatacgtatct 368  Q
    |||||||||||||||||||||||||||||||||||| || ||||||| |||||| ||||||||||||||| | ||||||| ||||||||||||||||| |    
T  27164064 tattgatgcatatctaaaattgaatcatatacatctctactgaatttctacaacgttgtctcactttttt-cccttcatc-ttttctaggatacgtatat 27164161  T
Q  369 gtgaagtatcttagaagtatccttatgtatct 400  Q
    ||||||||||||| |||||||||| |||||||    
T  27164162 gtgaagtatcttataagtatccttgtgtatct 27164193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 158 - 375
Target Start/End: Complemental strand, 36505020 - 36504803
Alignment:
Q  158 attaaaagaactcaagacaaattttatctaatgttgattaactgaatcacgtccctcgc--tatgttcatccacaagaagtataattttaagtggttcac 255  Q
    ||||||||||||||| ||||||||||||||||||||| || | ||||||| || ||| |  ||| |||||||| |||||||| |||||||| |||||||     
T  36505020 attaaaagaactcaacacaaattttatctaatgttgaatatccgaatcacctctctctcgttatcttcatccataagaagtagaattttaattggttcat 36504921  T
Q  256 tgagaaacaattctattgatgcatatctaaaattgaatcatatacatctataatgaatttttacaacattgtctcacttttttactcttcatctttttct 355  Q
     |||||||||||||| ||||||||||||||||||||| ||||||||||  || |||| | ||||||||||||||||||| ||||||||||||||||||||    
T  36504920 cgagaaacaattctagtgatgcatatctaaaattgaaccatatacatc-ctactgaa-tgttacaacattgtctcacttgtttactcttcatctttttct 36504823  T
Q  356 aggatacgtatctgtgaagt 375  Q
    ||||||||||||||||||||    
T  36504822 aggatacgtatctgtgaagt 36504803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 158 - 400
Target Start/End: Original strand, 38489651 - 38489893
Alignment:
Q  158 attaaaagaactcaagacaaattttatctaatgttgattaactgaatcacgtccctcgctatgttcatccacaagaagtataattttaagtggttcactg 257  Q
    |||||||||| |||| || ||||||||||||||||||||||||||||||  || |||| ||  ||||||| ||||||||||||||||||||||||||  |    
T  38489651 attaaaagaattcaacaccaattttatctaatgttgattaactgaatcaactctctcgttactttcatccgcaagaagtataattttaagtggttcatcg 38489750  T
Q  258 agaaacaattctattgatgcatatctaaaattgaatcatatacatctataatgaatttttacaacattgtctcacttttttactcttcatctttttctag 357  Q
    |||||||||| || | ||||||||||||||||||||||||||||||| || ||||| ||||||||||| | ||||||||||||| ||||  ||||| |||    
T  38489751 agaaacaattatagttatgcatatctaaaattgaatcatatacatctctactgaatgtttacaacattatatcacttttttactattca--tttttttag 38489848  T
Q  358 gatacg--tatctgtgaagtatcttagaagtatccttatgtatct 400  Q
    ||||||  ||| |||||| ||||||| ||||||| || |||||||    
T  38489849 gatacgtatatgtgtgaaatatcttataagtatcattgtgtatct 38489893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 151 - 403
Target Start/End: Complemental strand, 40615026 - 40614775
Alignment:
Q  151 aaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaatcacgtccctcgc--tatgttcatccacaagaagtataattttaagt 248  Q
    |||||||||||||||||| ||| ||||||||||| ||||||||||||| || ||||| || ||| |  ||  ||||||||||  ||  |||| |||||||    
T  40615026 aaacatcattaaaagaacgcaacacaaattttatataatgttgattaattggatcacttctctctcattactttcatccacagtaa--ataaatttaagt 40614929  T
Q  249 ggttcactgagaaacaattctattgatgcatatctaaaattgaatcatatacatctataatgaatttttacaacattgtctcacttttttactcttcatc 348  Q
    ||||||  ||||||||| |||| ||||| ||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||  ||||||    
T  40614928 ggttcatcgagaaacaactctaatgatgtatatctaaaattgaaccatatacatctctaatgaatttttacaatattgtctcacttttttacctttcatc 40614829  T
Q  349 tttttctaggatacgtatctgtgaagtatcttagaagtatccttatgtatctgtg 403  Q
     ||||||| ||||||||||| |||||||||||| ||||||| || ||||||||||    
T  40614828 -ttttctaagatacgtatctatgaagtatcttataagtatctttgtgtatctgtg 40614775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 224 - 362
Target Start/End: Complemental strand, 32835370 - 32835231
Alignment:
Q  224 atccacaagaagtataattttaagtggttcactgagaaacaattctattgatgcatatctaaaattg--aatcatatacatctataatgaatttttacaa 321  Q
    |||||||| |||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||  ||||||||||||||  | |||||||||||||    
T  32835370 atccacaataagtataattttaagtggttcattgagcaacaattctattaatgcatatctaaaattgaaaatcatatacatctcaactgaatttttacaa 32835271  T
Q  322 cattgtctcacttttttactcttcatctttttctaggatac 362  Q
    ||||||||||| ||||||| ||||||||||||||| |||||    
T  32835270 cattgtctcac-tttttacccttcatctttttctaagatac 32835231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 169 - 378
Target Start/End: Original strand, 20178972 - 20179174
Alignment:
Q  169 tcaagacaaattttatctaatgttgattaactgaatcacgtccctcgctatgttcatccacaagaagtataattttaagtggttcactgagaaacaattc 268  Q
    |||| |||||||||||| ||||||   ||| |||||||| || |||| ||  |||||||| ||||| |||||||||||||||||||   |||||||||||    
T  20178972 tcaacacaaattttatccaatgtt---taattgaatcacctctctcgttacattcatccataagaaatataattttaagtggttcatcaagaaacaattc 20179068  T
Q  269 tattgatgcatatctaaaattgaatcatatacatctataatgaatttttacaacattgtctcacttttttactcttcatctttttctaggatacgtatct 368  Q
     | |||| |||||||||||||||||||||||||||  |  ||||||| |||||||||||||||| ||||| | ||||||| ||||||||||||||| |||    
T  20179069 aactgatacatatctaaaattgaatcatatacatc--tcctgaatttctacaacattgtctcac-tttttccccttcatc-ttttctaggatacgtttct 20179164  T
Q  369 gtgaagtatc 378  Q
    ||||||||||    
T  20179165 gtgaagtatc 20179174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 221 - 392
Target Start/End: Original strand, 52204113 - 52204283
Alignment:
Q  221 ttcatccacaagaagtataattttaagtggttcactgagaaacaattctattgatgcatatctaaaattgaatcatatacatctataatgaatttttaca 320  Q
    ||||||||||| |||||||||||||||| |||||  | ||||||||| || | || ||||| ||||||||| |||||||||| | || | ||||||||||    
T  52204113 ttcatccacaataagtataattttaagtagttcatcgggaaacaattttactcattcatatttaaaattgattcatatacatttctactaaatttttaca 52204212  T
Q  321 acattgtctcacttttttactcttcatctttttctaggatacgtatctgtgaagtatcttagaagtatcctt 392  Q
    ||||||||||||||| |||| |||||||  |||||||||||||||| |||||| ||||||| ||||||||||    
T  52204213 acattgtctcactttcttacccttcatc-atttctaggatacgtatttgtgaaatatcttataagtatcctt 52204283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 244 - 403
Target Start/End: Original strand, 20369258 - 20369415
Alignment:
Q  244 taagtggttcactgagaaacaattctattgatgcatatctaaaattgaatcatatacatctataatgaatttttacaacattgtctcacttttttactct 343  Q
    |||||| ||||  ||||||||||| |||||||||| |||||||||||||||||||||||||  ||| |||||| |||||||||| |||||||||||| ||    
T  20369258 taagtgattcatcgagaaacaattatattgatgca-atctaaaattgaatcatatacatctcaaattaattttcacaacattgtatcacttttttaccct 20369356  T
Q  344 tcatctttttctaggatacgtatctgtgaagtatcttagaagtatccttatgtatctgtg 403  Q
    | ||| ||||| |||||| |||| |||||| ||||||| |||||||||| ||||||||||    
T  20369357 taatc-ttttcaaggatatgtatatgtgaaatatcttataagtatccttgtgtatctgtg 20369415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 178 - 403
Target Start/End: Original strand, 52695505 - 52695732
Alignment:
Q  178 attttatctaatgttgattaactgaatcacgtccctcgc--tatgttcatccacaagaagtataattttaagtg--gttcactgagaaacaattctattg 273  Q
    ||||||||||||||||||||| ||||||||  | ||| |  ||  ||||||||||||||| |||| ||||||||  |||||   ||||| ||||||| ||    
T  52695505 attttatctaatgttgattaattgaatcacccctctctcattaccttcatccacaagaag-ataaatttaagtgtggttcatcaagaaataattctaatg 52695603  T
Q  274 atgcatatctaaaattgaatcatatacatctataatgaatttttacaacattgtctcacttttttactcttcatctttttctaggatacgtatctgtgaa 373  Q
    ||||||||||||||||||| |||| |||||| ||  |||||||||||| ||||||||||||||| || ||||||| |||| ||||||| |||||||||||    
T  52695604 atgcatatctaaaattgaaccatacacatctctacggaatttttacaaaattgtctcactttttgacccttcatc-ttttataggataagtatctgtgaa 52695702  T
Q  374 gtatcttagaagtatccttatgtatctgtg 403  Q
     ||||||| ||| ||| || ||||| ||||    
T  52695703 atatcttataagcatctttgtgtatttgtg 52695732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 119 - 403
Target Start/End: Original strand, 39614930 - 39615207
Alignment:
Q  119 tattacatttttatatgttgggatatcaagagaaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaatcacgtccctcgcta 218  Q
    ||||| ||||| ||||||||||| | | ||| |||||| ||||||||||||||  ||||||||||||||| ||||||||| | |||||  || |||| ||    
T  39614930 tattatattttcatatgttgggagaacgagaaaaacattattaaaagaactcatcacaaattttatctaacgttgattaattaaatcatatctctcgtta 39615029  T
Q  219 tgttcatccacaagaagtataattttaagtggttcactgagaaa--caattctattgatgcatatctaaaattgaatcatatacatctataatgaatttt 316  Q
      |||||||| ||||||||||||||||| |||||||   | |||  | | |||| ||| | || | ||||||||||||| |||||||| |  ||||||||    
T  39615030 ccttcatccataagaagtataattttaattggttcatccaaaaattctactctactgaagtatgt-taaaattgaatcacatacatctcttctgaatttt 39615128  T
Q  317 tacaacattgtctcacttttttactcttcatctttttctaggatacgtatctgtgaagtatcttagaagtatccttatgtatctgtg 403  Q
    |||||||||        ||||||| ||||||| ||||||| ||||||||| |||||||||||||| ||||||| || ||||||||||    
T  39615129 tacaacatt-------atttttacccttcatc-ttttctaagatacgtatttgtgaagtatcttataagtatcattgtgtatctgtg 39615207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 221 - 400
Target Start/End: Complemental strand, 20619396 - 20619218
Alignment:
Q  221 ttcatccacaagaagtataattttaagtggttcactgagaaacaattctattgatgcatatctaaaattgaatcatatacatctataatgaatttttaca 320  Q
    |||||||||||||| ||||||||||||||||| |  || ||| |||| || | ||||||||||||||||||||||||||||| |  | |||||||| |||    
T  20619396 ttcatccacaagaaatataattttaagtggttgatcgaaaaataattatacttatgcatatctaaaattgaatcatatacatttccactgaattttcaca 20619297  T
Q  321 acattgtctcacttttttactcttcatctttttctaggatacgtatctgtgaagtatcttagaagtatccttatgtatct 400  Q
    ||||||| | |||||||||| ||  ||  |||||||| |||| ||| | |||||||||||| || ||||||| |||||||    
T  20619296 acattgtttgacttttttaccctatat-attttctagaatacatatatttgaagtatcttataaatatccttgtgtatct 20619218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 309 - 403
Target Start/End: Original strand, 51241341 - 51241434
Alignment:
Q  309 tgaatttttacaacattgtctcacttttttactcttcatctttttctaggatacgtatctgtgaagtatcttagaagtatccttatgtatctgtg 403  Q
    |||||||||||||||||||||||||||||||| | ||||| |||||||||||||||   |||||||||||||| ||||||| || ||||||||||    
T  51241341 tgaatttttacaacattgtctcacttttttacccatcatc-ttttctaggatacgttaatgtgaagtatcttataagtatctttgtgtatctgtg 51241434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 242 - 400
Target Start/End: Complemental strand, 35296536 - 35296380
Alignment:
Q  242 tttaagtggttcactgagaaacaattctattgatgcatatctaaaattgaatcatatacatctataatgaatttttacaacattgtctcacttttttact 341  Q
    |||||||| ||||  ||||||||||| || | ||||||||||||||||||||| |||| |||| || |||||||   | | ||||||||||||||||||     
T  35296536 tttaagtgattcatcgagaaacaattatacttatgcatatctaaaattgaatcgtatatatctctactgaattt---ctatattgtctcacttttttaca 35296440  T
Q  342 cttcatctttttctaggatac--gtatctgtgaagtatcttagaagtatccttatgtatct 400  Q
    ||||||| ||||||| |||||  ||||||  ||||||||||| ||||||| || |||||||    
T  35296439 cttcatc-ttttctatgatacatgtatctaggaagtatcttataagtatcattgtgtatct 35296380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 112 - 207
Target Start/End: Original strand, 51240854 - 51240948
Alignment:
Q  112 taaatcatattacatttttatatgttgggatatcaagagaaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaatcac 207  Q
    |||| ||||||| ||||| ||||||||||||||| ||| ||||||| | |||||||||||| |||||||||||||||| |||||||| ||||||||    
T  51240854 taaaccatattatattttcatatgttgggatatcgaga-aaacatcgtaaaaagaactcaacacaaattttatctaatattgattaattgaatcac 51240948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 309 - 402
Target Start/End: Original strand, 17063930 - 17064023
Alignment:
Q  309 tgaatttttacaacattgtctcacttttttactcttcatctttttctaggatacgtatctgtgaagtatcttagaagtatccttatgtatctgt 402  Q
    ||||| ||| ||||||| |||||||||| |||||||||| ||||| |||||||||||| | | |||||||||| |||||||||| |||||||||    
T  17063930 tgaatgtttgcaacattctctcacttttctactcttcatgtttttgtaggatacgtatatttaaagtatcttataagtatccttgtgtatctgt 17064023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 241 - 389
Target Start/End: Original strand, 24611468 - 24611617
Alignment:
Q  241 ttttaagtggttcactgagaaacaattctattgatgcatatctaaaattgaatcatatacatctataatgaatttttacaacattgtctcacttttttac 340  Q
    |||||| ||||| | ||| |||||||| || |||| ||||| | ||||||||||||||||||||  | ||| |||| ||||||   ||||||||||||||    
T  24611468 ttttaattggttaattgaaaaacaattatagtgattcatatattaaattgaatcatatacatctccattgatttttcacaacacaatctcacttttttac 24611567  T
Q  341 tcttcatcttttt-ctaggatacgtatctgtgaagtatcttagaagtatc 389  Q
     |||||| ||||| | ||||||||| |||||| |||||| || |||||||    
T  24611568 ccttcatttttttcccaggatacgtctctgtgtagtatcgtacaagtatc 24611617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 260 - 389
Target Start/End: Complemental strand, 47014357 - 47014226
Alignment:
Q  260 aaacaattctattgatgcatatctaaaattgaatcatatacatctataatgaatttttacaacattgtctcacttttttactcttcatcttt--ttc-ta 356  Q
    |||||||| || ||||  ||||||||| |||||||||||||||||  | |||||||| |||||||  |||||||||||||||| | || |||  ||| ||    
T  47014357 aaacaattataatgatttatatctaaa-ttgaatcatatacatcttcattgaattttcacaacatattctcacttttttactccttattttttcttctta 47014259  T
Q  357 ggatacgtatctgtgaagtatcttagaagtatc 389  Q
    |||||||| | |||||||||||||| |||||||    
T  47014258 ggatacgtctttgtgaagtatcttataagtatc 47014226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 158 - 204
Target Start/End: Original strand, 17063888 - 17063934
Alignment:
Q  158 attaaaagaactcaagacaaattttatctaatgttgattaactgaat 204  Q
    |||||| |||||||| |||||||||||||||||||||||||||||||    
T  17063888 attaaaggaactcaacacaaattttatctaatgttgattaactgaat 17063934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 236 - 330
Target Start/End: Original strand, 52203963 - 52204057
Alignment:
Q  236 tataattttaagtggttcactgagaaacaattctattgatgcatatctaaaattgaatcatatacatctataatgaatttttacaacattgtctc 330  Q
    ||||||||||||| |||||  | ||||||||| || | || ||||| ||||||||| |||||||||| | || | ||||||||||||||||||||    
T  52203963 tataattttaagtagttcatcgggaaacaattttactcattcatatttaaaattgattcatatacatttctactaaatttttacaacattgtctc 52204057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 234
Target Start/End: Original strand, 53530625 - 53530701
Alignment:
Q  158 attaaaagaactcaagacaaattttatctaatgttgattaactgaatcacgtccctcgctatgttcatccacaagaa 234  Q
    ||||||||||||||| ||||||||| | |||| |||||||| ||||||   || |||| ||| ||||||||||||||    
T  53530625 attaaaagaactcaacacaaattttgtttaatattgattaattgaatctactctctcgttatcttcatccacaagaa 53530701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 131 - 206
Target Start/End: Complemental strand, 21853913 - 21853838
Alignment:
Q  131 atatgttgggatatcaagagaaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaatca 206  Q
    ||||||| ||||||||| | |  ||||| ||||||||||| | ||||||||||| ||||||||||| | |||||||    
T  21853913 atatgttaggatatcaacaaatgcatcaataaaagaactctaaacaaattttatttaatgttgattgattgaatca 21853838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 328 - 389
Target Start/End: Complemental strand, 2111452 - 2111391
Alignment:
Q  328 ctcacttttttactcttcatctttttctaggatacgtatctgtgaagtatcttagaagtatc 389  Q
    |||| |||||||| |||||| |||| | ||||||||| ||| |||||||||||| |||||||    
T  2111452 ctcatttttttacacttcattttttcccaggatacgtctctatgaagtatcttataagtatc 2111391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 403
Target Start/End: Complemental strand, 32834987 - 32834947
Alignment:
Q  363 gtatctgtgaagtatcttagaagtatccttatgtatctgtg 403  Q
    |||| ||||||||||||||||||||||||| ||||| ||||    
T  32834987 gtatttgtgaagtatcttagaagtatccttgtgtatatgtg 32834947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 109 - 403
Target Start/End: Complemental strand, 17116497 - 17116201
Alignment:
Q  109 ttataaatcatattacatttttatatgttgggatatcaagagaaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaatcacg 208  Q
    ||||||| |||||||||| || ||||||||||||||  |||||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||     
T  17116497 ttataaaccatattacatattcatatgttgggatattgagagaaacataattaaaagaactcaacacaaattttatctaatgttgattaactaaatcaca 17116398  T
Q  209 tccctcgctatgttcatccacaagaagtataattttaagtggttcactgagaaacaattctattgatgcatatctaaaattgaatcatatacatctataa 308  Q
    || |||| || |||||||||||||||||||||||||||||| ||||  || ||| |||||||||||||||||||||||||||| ||||||||||||||||    
T  17116397 tctctcgttacgttcatccacaagaagtataattttaagtgtttcatcgaaaaataattctattgatgcatatctaaaattgagtcatatacatctataa 17116298  T
Q  309 tgaatttttacaacattgtctcacttttttactcttcatctttttctagg--atacgtatctgtgaagtatcttagaagtatccttatgtatctgtg 403  Q
     |||||||||||||||| ||||||||||||||||||||||||||||||||  |||||| | ||||||||||||||||||||| ||| ||||||||||    
T  17116297 agaatttttacaacattatctcacttttttactcttcatctttttctaggatatacgtgtatgtgaagtatcttagaagtattcttgtgtatctgtg 17116201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 147 - 378
Target Start/End: Complemental strand, 50726861 - 50726630
Alignment:
Q  147 agagaaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaatcacgtccctcgctatgttcatccacaagaagtataattttaa 246  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||    
T  50726861 agagaaacatcattaaaagaattcaacacaaattttatctaatgttgattaactgaatcacatctctcgctacgttcatccacaagaagtataattttaa 50726762  T
Q  247 gtggttcactgagaaacaattctattgatgcatatctaaaattgaatcatatacatctataatgaatttttacaacattgtctcacttttttactcttca 346  Q
    | | ||||  |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  50726761 gcgtttcatcgagaaacaattctattgacgcatatctaaaattgagtcatatacatctataatgaatttttacaacattgtctcacttttttactcttct 50726662  T
Q  347 tctttttctaggatacgtatctgtgaagtatc 378  Q
    ||||||||||  |||||| |||||||||||||    
T  50726661 tctttttctataatacgtgtctgtgaagtatc 50726630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 108 - 401
Target Start/End: Complemental strand, 41827922 - 41827636
Alignment:
Q  108 cttataaatcatattacatttttatatgttgggatatcaagagaaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaatcac 207  Q
    |||||||| ||||||||||||| ||||| ||||||||  |||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||    
T  41827922 cttataaaccatattacattttcatatgctgggatattgagagaaacatcattaaaagatcccaacacaaattttatctaatgttgattaactgaatcac 41827823  T
Q  208 gtccctcgctatgttcatccacaagaagtataattttaagtggttcactgagaaacaattctattgatgcatatctaaaattgaatcatatacatctata 307  Q
     |  ||||||| |||||||||||| ||||||||||||||||| |||| |||||| |||||||||| || ||||| ||||||||| |||||||| || |||    
T  41827822 atttctcgctacgttcatccacaa-aagtataattttaagtgtttcattgagaatcaattctattcatacatatataaaattgagtcatatacctcaata 41827724  T
Q  308 atgaatttttacaacattgtctcacttttttactcttcatctttttctaggatacgtatctgtgaagtatcttagaagtatccttatgtatctg 401  Q
    ||||||||||||||      |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||    
T  41827723 atgaatttttacaa------ctcacttttttactcttcatctttttctagaatacgtgtctgtgaagtatcttagaagtatccttgtgtatctg 41827636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 108 - 403
Target Start/End: Original strand, 31513501 - 31513787
Alignment:
Q  108 cttataaatcatattacatttttatatgttgggatatcaagagaaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaatcac 207  Q
    |||||||| ||||||||||||| ||||||||||||||  ||||||||||||||||||||| |||   ||     | ||||||||||||||||||||||||    
T  31513501 cttataaaccatattacattttcatatgttgggatattgagagaaacatcattaaaagaa-tca---ca-----tctctaatgttgattaactgaatcac 31513591  T
Q  208 gtccctcgctatgttcatccacaagaagtataattttaagtggttcactgagaaacaattctattgatgcatatctaaaattgaatcatatacatctata 307  Q
     || |||| || | |||||||  | |||||||||||||| || ||||  ||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  31513592 atctctcgttacgatcatccaacataagtataattttaactgtttcatcgagaaacaattctattgatgcatatctaaaattgagtcatatacacctata 31513691  T
Q  308 atgaatttttacaacattgtctcacttttttactcttcatctttttctaggatacgtatctgtgaagtatcttagaagtatccttatgtatctgtg 403  Q
    || |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  31513692 ataaatttttacaacattgtctcacttttttactcctcatctttttctaggatacgtgtctgtgaagtatcttagaagtatccttgtgtatctgtg 31513787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 108 - 403
Target Start/End: Original strand, 38682790 - 38683091
Alignment:
Q  108 cttataaatcatattacatttttatatgttgggatatcaagagaaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaatcac 207  Q
    |||||||| ||||||| ||||||| ||||||||||||| |||||||||| || |||||||||||| |||||||||||||||||||||||| |||||||||    
T  38682790 cttataaaccatattatatttttaaatgttgggatatcgagagaaacataatgaaaagaactcaacacaaattttatctaatgttgattagctgaatcac 38682889  T
Q  208 g------tccctcgctatgttcatccacaagaagtataattttaagtggttcactgagaaacaattctattgatgcatatctaaaattgaatcatataca 301  Q
           || |||| ||  |||||||||||||| ||||||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||    
T  38682890 catcacctctctcgttaccttcatccacaagaattataattttaagtggttaatcgagaaacaattctattgatgcatatctaaaattgaatcatataca 38682989  T
Q  302 tctataatgaatttttacaacattgtctcacttttttactcttcatctttttctaggatacgtatctgtgaagtatcttagaagtatccttatgtatctg 401  Q
    |||  | | |||| |||||||||| | ||| |||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||| ||    
T  38682990 tctccactaaattgttacaacattatttcatttttttacccttcatctttttctaggatacatatctgtgaagtattttagaagtatctttatgtatatg 38683089  T
Q  402 tg 403  Q
    ||    
T  38683090 tg 38683091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 108 - 400
Target Start/End: Complemental strand, 14287270 - 14286975
Alignment:
Q  108 cttataaatcatattacatttt--tatatgttgggatatcaagagaaacatcattaaaagaactcaagacaaattttatctaatgtt-gattaactgaat 204  Q
    |||||||| ||||||| | |||  |||||||| ||||||| ||||||  || ||||||||||||||| ||| ||||||||||||||| |||||| |||||    
T  14287270 cttataaaccatattatactttcatatatgtttggatatcgagagaagaataattaaaagaactcaacacatattttatctaatgtttgattaattgaat 14287171  T
Q  205 cacgtccctcgctatgttcatccacaagaagtataattttaagtggttcactgagaaacaattctattgatgcatatctaaaattgaatcatatacatct 304  Q
    ||| || |||  ||  ||||||||||||||||||||||||||||||||||| | |||||||||||| | ||||||||||||||||| |||||||||||||    
T  14287170 cacctctctcattaccttcatccacaagaagtataattttaagtggttcaccgtgaaacaattctactaatgcatatctaaaattgcatcatatacatct 14287071  T
Q  305 ataatgaatttttacaacattgtctcacttttttactcttcatctttttctaggatacgtatctgtgaagtatcttagaagtatccttatgtatct 400  Q
     |  |||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||| || ||||||||||| ||||||| || |||||||    
T  14287070 ctcctgaatttttacaacattgtctcactttttttcccttcatctttttctaggatacatatatgcgaagtatcttataagtatcattgtgtatct 14286975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 158 - 401
Target Start/End: Complemental strand, 13558682 - 13558438
Alignment:
Q  158 attaaaagaactcaagacaaattttatctaatgttgattaactgaatcacgtccctcgc--tatgttcatccacaagaagtataattttaagtggttcac 255  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||||||  || ||| |  ||  ||||||||||||||||||||||||||||||||||     
T  13558682 attaaaagaactcaacacacattttatctaatgttgattaactgaatcatctctctctcgttaccttcatccacaagaagtataattttaagtggttcat 13558583  T
Q  256 tgagaaacaattctattgatgcatatctaaaattgaatcatatacatctataatgaatttttacaacattgtctcacttttttactcttcatctttttct 355  Q
     ||||||||||| || ||||||||||||||||||||||||||||||||  || ||||| ||||||||||||||||||||||||||||||||||||||| |    
T  13558582 cgagaaacaattttagtgatgcatatctaaaattgaatcatatacatccctattgaatgtttacaacattgtctcacttttttactcttcatcttttttt 13558483  T
Q  356 aggatacgtatctgtgaagtatcttagaagtatccttatgtatctg 401  Q
    ||||||| ||| ||||||||||| || || ||||||| ||||||||    
T  13558482 aggatacatatatgtgaagtatc-tataattatccttgtgtatctg 13558438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 167 - 399
Target Start/End: Complemental strand, 40694120 - 40693887
Alignment:
Q  167 actcaagacaaattttatctaatgttgattaactgaatcacgtccctcgctatgttcatccacaagaagtataattttaagtggttcactgagaaacaat 266  Q
    |||||| | |||||||||||||| |||||||||||||| || || ||||||   |||||||| |||||||||||||||||||| ||||  || |||||||    
T  40694120 actcaacataaattttatctaatattgattaactgaatgacatctctcgctgcattcatccaaaagaagtataattttaagtgtttcatcgaaaaacaat 40694021  T
Q  267 tctattgatgcatatctaaaattgaatcatatacatctataatgaatttttacaacattgtctcacttttttact-cttcatctttttctaggatacgta 365  Q
    ||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||     
T  40694020 tctattgatgcatatctaatattgagtcatatacatcaataatgaatttttacaacattgtctcacttttttactccttcatatttttctagaatacgtt 40693921  T
Q  366 tctgtgaagtatcttagaagtatccttatgtatc 399  Q
    ||||||||||||||||||||||| ||| ||||||    
T  40693920 tctgtgaagtatcttagaagtattcttgtgtatc 40693887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 118 - 403
Target Start/End: Complemental strand, 4966923 - 4966637
Alignment:
Q  118 atattacatttttatatgttgggatatcaagagaaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaatcacgtccctcgc- 216  Q
    |||||| ||||| ||||||||||||||  |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||  || ||| |     
T  4966923 atattatattttcatatgttgggatattgagagaaacatcattaaaagaactcaacacaaattttatttaatgttgattaactgaatcatctctctctcg 4966824  T
Q  217 -tatgttcatccacaagaagtataattttaagtggttcactgagaaacaattctattgatgcatatctaaaattgaatcatatacatctataatgaattt 315  Q
     ||  ||||||||||||||||||| |||||||| |||||  ||||||||||||||  |||| |||||||||||||||||||||| ||||||| |||| ||    
T  4966823 ttactttcatccacaagaagtata-ttttaagttgttcatcgagaaacaattctacagatgtatatctaaaattgaatcatatatatctatagtgaa-tt 4966726  T
Q  316 ttacaacattgtctcacttttttactcttca-tctttttctaggatacgtatctgtgaagtatcttagaagtatccttatgtatctgtg 403  Q
    |||||| ||||||||||||| |||| ||||| | |||||||||||||| ||| ||| |||||||||| |||||||||| ||||| ||||    
T  4966725 ttacaatattgtctcactttattacccttcattttttttctaggatacatatatgtaaagtatcttataagtatccttgtgtatttgtg 4966637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 118 - 403
Target Start/End: Original strand, 4972959 - 4973251
Alignment:
Q  118 atattacatttttatatgttgggatatcaagagaaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaatcacgtccctcgct 217  Q
    |||||| ||||||||||||||||||||  |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  || ||| ||    
T  4972959 atattatatttttatatgttgggatattgagagaaacatcattaaaagaactcaacacaaattttatctaatgttgattaactgaatcatctctctctct 4973058  T
Q  218 atg------ttcatccacaagaagtataattttaagtggttcactgagaaacaattctattgatgcatatctaaaattgaatcatatacatctataatga 311  Q
     |       ||||||||||||||||||| |||||||| |||||  ||||||||||||||  |||| |||||||||||||||||||||| ||||  | |||    
T  4973059 ttccttactttcatccacaagaagtata-ttttaagttgttcatcgagaaacaattctacagatgtatatctaaaattgaatcatatatatctccactga 4973157  T
Q  312 atttttacaacattgtctcacttttttactcttca--tctttttctaggatacgtatctgtgaagtatcttagaagtatccttatgtatctgtg 403  Q
    |||||||||| ||||||||||||| || | |||||  | |||||||||||||| ||| ||| |||||||||| ||||||| || ||||| ||||    
T  4973158 atttttacaatattgtctcactttattgcccttcatttttttttctaggatacatatatgtaaagtatcttataagtatctttgtgtatttgtg 4973251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 108 - 298
Target Start/End: Original strand, 25294510 - 25294700
Alignment:
Q  108 cttataaatcatattacatttttatatgttgggatatcaagagaaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaatcac 207  Q
    |||||||| ||||||||||||| || |||||| ||||  ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  25294510 cttataaaccatattacattttcatgtgttggaatattgagagaaacatcattaaaagaattcaacacaaattttatctaatgttgattaactgaatcac 25294609  T
Q  208 gtccctcgctatgttcatccacaagaagtataattttaagtggttcactgagaaacaattctattgatgcatatctaaaattgaatcatat 298  Q
     |  |||||||||||||||||||| ||||||||||||||||| || |  |||||||| |||||||||||||||||||||||||||||||||    
T  25294610 atatctcgctatgttcatccacaaaaagtataattttaagtgttttatcgagaaacacttctattgatgcatatctaaaattgaatcatat 25294700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 158 - 389
Target Start/End: Original strand, 11767567 - 11767801
Alignment:
Q  158 attaaaagaactcaagacaaattttatctaatgttgattaactgaatcacgt--ccctcgctatgttcatccacaagaagtataa---ttttaagtggtt 252  Q
    |||||||||||||||  ||||||||||||||||||||||||||||||||| |  | |||| ||  ||||||| ||||||||||||   ||||||||||||    
T  11767567 attaaaagaactcaa--caaattttatctaatgttgattaactgaatcacatttctctcgttactttcatccgcaagaagtataataattttaagtggtt 11767664  T
Q  253 cactgagaaacaattctattgatgcatatctaaaattgaatcatatacatctataatgaatttttacaacattgtctcacttttttactcttcatctttt 352  Q
     |  |||||| ||||||| | |||||||||||||||||||||||||| |||  ||  ||||||||||||||||||||||| |||||||||||||||||||    
T  11767665 aatcgagaaaaaattctagttatgcatatctaaaattgaatcatatatatcgctaccgaatttttacaacattgtctcacatttttactcttcatctttt 11767764  T
Q  353 tctaggatacgtatctgtgaagtatcttagaagtatc 389  Q
    |||||||||||||||| |||||||||||| |||||||    
T  11767765 tctaggatacgtatctctgaagtatcttataagtatc 11767801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 120 - 298
Target Start/End: Complemental strand, 40032871 - 40032690
Alignment:
Q  120 attacatttttatatgttgggatatcaagagaaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaatcacgt--ccctcgct 217  Q
    |||| ||||| ||||||||||||||| ||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |  | |||| |    
T  40032871 attatattttcatatgttgggatatcgagaaaaacatcattaaaagaactcaacacaaattttatataatgttgattaactgaatcaccttcctctcgtt 40032772  T
Q  218 atgttcatccacaagaagtataattttaagtggttca-ctgagaaacaattctattgatgcatatctaaaattgaatcatat 298  Q
    |  ||||| ||||||||||||||||||||||| ||||  ||  |||||||| |||||| |||||| ||||||||||||||||    
T  40032771 accttcattcacaagaagtataattttaagtgattcatttggtaaacaattatattgacgcatatataaaattgaatcatat 40032690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 224 - 388
Target Start/End: Complemental strand, 16122921 - 16122756
Alignment:
Q  224 atccacaagaagtataattttaagtggttcactgagaaacaattctattgatgcatatctaaaattgaatcatatacatctataatgaatttttacaaca 323  Q
    |||| |||||||| |||||| ||||||||||   |||||||||| || ||||||||||||||||||||||||||||||| |  |||||| ||| ||||||    
T  16122921 atccgcaagaagtgtaatttgaagtggttcatcaagaaacaattatactgatgcatatctaaaattgaatcatatacatttccaatgaa-tttcacaaca 16122823  T
Q  324 ttgtctcacttttttactcttcatcttt--ttctaggatacgtatctgtgaagtatcttagaagtat 388  Q
    ||||||||||||||||| |||||| |||  | ||| ||||||||| |||||||||||||| ||||||    
T  16122822 ttgtctcacttttttacccttcattttttgtcctatgatacgtatatgtgaagtatcttataagtat 16122756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 264 - 400
Target Start/End: Complemental strand, 10443657 - 10443522
Alignment:
Q  264 aattctattgatgcatatctaaaattgaatcatatacatctataatgaatttttacaacattgtctcacttttttactcttcatctttttctaggatacg 363  Q
    ||||||| ||||| ||||||||||||||||||||||||||| || || |||| ||||||||| |||||||||||||  ||||||| |||||||||||||     
T  10443657 aattctactgatgaatatctaaaattgaatcatatacatctctactggatttctacaacattctctcacttttttatacttcatc-ttttctaggataca 10443559  T
Q  364 tatctgtgaagtatcttagaagtatccttatgtatct 400  Q
    ||| ||| ||||||||| ||||||||||| |||||||    
T  10443558 tatatgtaaagtatcttggaagtatccttgtgtatct 10443522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 108 - 207
Target Start/End: Complemental strand, 13644020 - 13643921
Alignment:
Q  108 cttataaatcatattacatttttatatgttgggatatcaagagaaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaatcac 207  Q
    |||||||||||||||| ||||| ||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||    
T  13644020 cttataaatcatattatattttcatatgttgggatatcaagataagcatcattaaaagaactcaacacaaattttatctaatgttgaataattgaatcac 13643921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 277 - 403
Target Start/End: Complemental strand, 13643894 - 13643769
Alignment:
Q  277 catatctaaaattgaatcatatacatctataatgaatttttacaacattgtctcacttttttactcttcatctttttctaggatacgtatctgtgaagta 376  Q
    |||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||| | |||||||||||  || ||||||| | |||||||||    
T  13643894 catatctaaaattgaatcatatacatctctattgaatttttacaacgttgtctcactttttt-cccttcatcttttcttatgatacgtgtatgtgaagta 13643796  T
Q  377 tcttagaagtatccttatgtatctgtg 403  Q
     |||| |||||||||| ||||| ||||    
T  13643795 ccttacaagtatccttgtgtatatgtg 13643769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 131 - 340
Target Start/End: Original strand, 51898831 - 51899041
Alignment:
Q  131 atatgttgggatatcaagagaaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaatcacgtc--cctcgctatgttcatcca 228  Q
    ||||||||||||||||| |||||||||||||||||||||||| |||| |||| ||||||||||||||| |  ||| | ||   |||| ||  ||||||||    
T  51898831 atatgttgggatatcaatagaaacatcattaaaagaactcaa-acaatttttgtctaatgttgattaattctatctcctctttctcgttaccttcatcca 51898929  T
Q  229 caagaagtataattttaagtggttcactgagaaacaattctattgatgcatatctaaaattgaatcatatacatctataatgaatttttacaacattgtc 328  Q
    |||||||| |||||||  ||||||||  ||||||||||| ||| | ||||| ||||||||  |||||||||||| |  |  ||||||| ||||| |||||    
T  51898930 caagaagtgtaattttcggtggttcatcgagaaacaattatatcggtgcatgtctaaaataaaatcatatacattttcaccgaattttcacaactttgtc 51899029  T
Q  329 tcacttttttac 340  Q
    ||  ||||||||    
T  51899030 tccgttttttac 51899041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 221 - 400
Target Start/End: Complemental strand, 271067 - 270890
Alignment:
Q  221 ttcatccacaagaagtataattttaagtggttcactgagaaacaattctattgatgcatatctaaaattgaatcatatacatctataatgaatttttaca 320  Q
    |||||||||||  |||||||||||||||| ||||  |||||| |||| || ||||| |||||||||||||||||||||| ||||  |  ||||||| |||    
T  271067 ttcatccacaaatagtataattttaagtgattcatagagaaagaattatactgatgtatatctaaaattgaatcatatatatctccatcgaattttcaca 270968  T
Q  321 acattgtctcacttttttactcttcatctttttctaggatacgtatctgtgaagtatcttagaagtatccttatgtatct 400  Q
    ||||||||| ||  |||||  ||||||| ||||||| ||| || || |||||| ||||||| |||||| ||| |||||||    
T  270967 acattgtcttac-cttttatccttcatc-ttttctaagatgcgcatttgtgaaatatcttataagtattcttgtgtatct 270890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 236 - 381
Target Start/End: Original strand, 30902365 - 30902511
Alignment:
Q  236 tataattttaagtggttcactgagaaacaattctattgatgcatatctaaaattgaatcatatacatctataatgaatttttacaa---cattgtctcac 332  Q
    ||||||||||||||||||| |||| |||| | ||| |||||||||| ||||||||||||||||||||||  | |||||||| ||||    ||||||||||    
T  30902365 tataattttaagtggttcattgaggaacagt-ctactgatgcatatttaaaattgaatcatatacatctccattgaattttcacaaaattattgtctcac 30902463  T
Q  333 ttttttactcttcatctttttctaggatacgtatctgtgaagtatctta 381  Q
    ||||| ||  |||||| |||||| | ||| |||||| ||||||||||||    
T  30902464 tttttaacagttcatc-ttttctggtatatgtatctatgaagtatctta 30902511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 260 - 388
Target Start/End: Original strand, 46594253 - 46594385
Alignment:
Q  260 aaacaattctattgatgcatatctaaaattgaatcatatacatctataatgaatttttacaacattgtctcacttttttactcttcatctttttct---- 355  Q
    |||||||| || |||| ||||||| ||||||||||||||||||||  | |||||||| ||||||| |||||| |||||||  |||||| ||||| |        
T  46594253 aaacaattatagtgattcatatcttaaattgaatcatatacatctccattgaattttcacaacatagtctcatttttttatacttcatttttttttcttc 46594352  T
Q  356 aggatacgtatctgtgaagtatcttagaagtat 388  Q
    |||||| || |||||||||||||||| ||||||    
T  46594353 aggatatgtctctgtgaagtatcttataagtat 46594385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 260 - 388
Target Start/End: Original strand, 22791116 - 22791245
Alignment:
Q  260 aaacaattctattgatgcatatctaaaattgaatcatatacatctataatgaatttttacaacattgtctca-cttttttactcttcatctttttctagg 358  Q
    |||||||| || |||| ||||||| |||||||||||||||||| |  | |||||||| ||||||  ||||||  |||||||| |||||| |||||| |||    
T  22791116 aaacaattgtagtgattcatatcttaaattgaatcatatacatatccattgaattttcacaacacagtctcattttttttacacttcatttttttccagg 22791215  T
Q  359 atacgtatctgtgaagtatcttagaagtat 388  Q
    |||||| | ||||||||| |||| ||||||    
T  22791216 atacgtctttgtgaagtaacttataagtat 22791245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 260 - 389
Target Start/End: Complemental strand, 50709624 - 50709492
Alignment:
Q  260 aaacaattctattgatgcatatctaaaattgaatcatatacatctataatgaatttttacaacattgtctca-cttttttactcttcatctttttct--a 356  Q
    |||||||| || |||| ||||||| ||||||||||||||||||||  | |||||||| |||||| |||||||  |||||||| |||||| ||||| |  |    
T  50709624 aaacaattataatgattcatatcttaaattgaatcatatacatctccattgaattttcacaacactgtctcattttttttacacttcattttttttttca 50709525  T
Q  357 ggatacgtatctgtgaagtatcttagaagtatc 389  Q
    |||||||| ||||| || ||||||| |||||||    
T  50709524 ggatacgtctctgtaaaatatcttataagtatc 50709492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 272 - 388
Target Start/End: Complemental strand, 29488325 - 29488210
Alignment:
Q  272 tgatgcatatctaaaattgaatcatatacatctataatgaatttttacaacattgtctcacttttttactcttcatctttttctaggatacgtatctgtg 371  Q
    |||| ||||||| ||| | ||||||||||||||  | | |||||| ||||||  ||||||||||||  | |||||| |||||| |||||||||||| |||    
T  29488325 tgatacatatcttaaacttaatcatatacatctccactaaattttcacaacaaagtctcactttttcccccttcat-tttttccaggatacgtatcagtg 29488227  T
Q  372 aagtatcttagaagtat 388  Q
    |||||||||| ||||||    
T  29488226 aagtatcttataagtat 29488210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 277 - 377
Target Start/End: Complemental strand, 781929 - 781830
Alignment:
Q  277 catatctaaaattgaatcatatacatctataatgaatttttacaacattgtctcacttttttactcttcatctttttctaggatacgtatctgtgaagta 376  Q
    |||||||||||||||||||||||||| |  | |||||||| ||||||||||||||  ||||||   |||||| ||| |||| |||  |||||||||||||    
T  781929 catatctaaaattgaatcatatacatattcattgaattttcacaacattgtctcaaatttttaactttcatc-tttcctagtataattatctgtgaagta 781831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 323 - 403
Target Start/End: Complemental strand, 40032683 - 40032600
Alignment:
Q  323 attgtctcacttttttactcttcatctttttctaggatacgtatctgtgaag---tatcttagaagtatccttatgtatctgtg 403  Q
    ||||||||| |||||||| || ||||| ||||||| ||| |||||| |||||   |||||||||||||||||| | ||||||||    
T  40032683 attgtctcatttttttaccctacatctctttctagaatatgtatctatgaagaagtatcttagaagtatccttgtatatctgtg 40032600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 260 - 353
Target Start/End: Original strand, 50461234 - 50461327
Alignment:
Q  260 aaacaattctattgatgcatatctaaaattgaatcatatacatctataatgaatttttacaacattgtctcacttttttactcttcatcttttt 353  Q
    |||||||| ||| ||| ||||||| |||||||| ||||||||||| || |||||||| || | ||  |||||||| ||||| |||||| |||||    
T  50461234 aaacaattatatcgattcatatcttaaattgaaccatatacatctctattgaattttcaccatataatctcacttctttacccttcattttttt 50461327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0495 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: scaffold0495
Description:

Target: scaffold0495; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 156 - 379
Target Start/End: Complemental strand, 6362 - 6137
Alignment:
Q  156 tcattaaaagaactcaagacaaattttatctaatgttgattaactgaatcacgtccctcgc--tatgttcatccacaagaagtataattttaagtggttc 253  Q
    ||||||||| |||||||   ||||||||||||||||||||||||| |||||| || ||| |  ||  ||  | |||||||||||||||||||||||||||    
T  6362 tcattaaaataactcaacctaaattttatctaatgttgattaactaaatcacctcactctcgttacatttgttcacaagaagtataattttaagtggttc 6263  T
Q  254 actgagaaacaattctattgatgcatatctaaaattgaatcatatacatctataatgaatttttacaacattgtctcacttttttactcttcatcttttt 353  Q
    |   | ||||||||||| | ||||||||||| ||||||||||||||||||| ||  |||| ||| |||||||||||||||||||||||||||||||||||    
T  6262 atcaaaaaacaattctagttatgcatatctataattgaatcatatacatctctatcgaatgtttgcaacattgtctcacttttttactcttcatcttttt 6163  T
Q  354 ctaggatacgtatctgtgaagtatct 379  Q
      ||||||||||| |||||| |||||    
T  6162 gaaggatacgtatatgtgaaatatct 6137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0581 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0581
Description:

Target: scaffold0581; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 318 - 379
Target Start/End: Complemental strand, 10106 - 10046
Alignment:
Q  318 acaacattgtctcacttttttactcttcatctttttctaggatacgtatctgtgaagtatct 379  Q
    ||||||||||||||||||||||| ||| || |||| |||||||||| |||||||||||||||    
T  10106 acaacattgtctcacttttttaccctttatatttt-ctaggatacgcatctgtgaagtatct 10046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 363 - 400
Target Start/End: Original strand, 38405 - 38442
Alignment:
Q  363 gtatctgtgaagtatcttagaagtatccttatgtatct 400  Q
    |||||| |||||||||||| ||||||||||||||||||    
T  38405 gtatctctgaagtatcttataagtatccttatgtatct 38442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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