View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20443_low_6 (Length: 398)
Name: NF20443_low_6
Description: NF20443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20443_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 19 - 383
Target Start/End: Complemental strand, 3880410 - 3880043
Alignment:
| Q |
19 |
atcccaggaatgaaaagaaacctaatctctcacagatacaacagccagaaaagttgagacattatcccaaggatcatctaccgctaaacactgatagtaa |
118 |
Q |
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| T |
3880410 |
atcccaggaatgaaaagaaacctaatctctcacagatacaacagccagaaaagttgagacattatcccaaggatcatctaccgctaaacactgatagtaa |
3880311 |
T |
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| Q |
119 |
caactaataatgattcatgcaattatttcaactaaagtcacaaatttcagtaattctttaaactgattttgtgagaataccaagaataccctttcataaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3880310 |
caactaataatgattcatgcaattatttcaactaaagtcacaaatttcagtagttctttaaactgattttgtgagaataccaagaataccctttcataaa |
3880211 |
T |
|
| Q |
219 |
cttcatcaatatgacatac---aaaagtacatcagtattataaaaatcacacgcaaaactccaatcaataagttatggtacagctggattagttgattat |
315 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
3880210 |
cttcatcaatatgacatacaaaaaaagtacatcagtattataaaaatcacaagcaaaacttcaatcaataagttatggtacagctggattagttgattat |
3880111 |
T |
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| Q |
316 |
ataaaaaacaattagaattgtgtaaaaggggtcaagagtaggaaaacacttatttgaattgtcagaat |
383 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
3880110 |
ataaaaaacaattagaattgtgtaaaagggatcaagagtaggaaaacacttatttgaattgtcagaat |
3880043 |
T |
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