View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20444_high_1 (Length: 533)
Name: NF20444_high_1
Description: NF20444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20444_high_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 514; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 8 - 521
Target Start/End: Original strand, 1937820 - 1938333
Alignment:
| Q |
8 |
tagcaaaggaatggacttataatccttggaatactgataaacacaatttccttaggtctttcaccaaatcattaattgtcatgctatactcgtctttcat |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1937820 |
tagcaaaggaatggacttataatccttggaatactgataaacacaatttccttaggtctttcaccaaatcattaattgtcatgctatactcgtctttcat |
1937919 |
T |
|
| Q |
108 |
ttgcattttaagtgtaacattttataattcattcaatgcaatactaataattgtttagataaggaaatgtgcaatctctttaaaattattaaattaattg |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1937920 |
ttgcattttaagtgtaacattttataattcattcaatgcaatactaataattgtttagataaggaaatgtgcaatctctttaaaattattaaattaattg |
1938019 |
T |
|
| Q |
208 |
tttgtaacataagaactctataattgcatgcattttatacctcagcaataattgtgatatgaagtgtggaatcaccaaatgggaaaatggtagtacttgt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1938020 |
tttgtaacataagaactctataattgcatgcattttatacctcagcaataattgtgatatgaagtgtggaatcaccaaatgggaaaatggtagtacttgt |
1938119 |
T |
|
| Q |
308 |
tatagatagatgaaggtttgtaaccaagtttagtattttgtgcacaatattatcattttgcttcttctcacattggattcaatcatcacactgttttctg |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1938120 |
tatagatagatgaaggtttgtaaccaagtttagtattttgtgcacaatattatcattttgcttcttctcacattggattcaatcatcacactgttttctg |
1938219 |
T |
|
| Q |
408 |
agactcttagtgtgactttaggtaatactatttcatcactgaatctataactagccaagtttgatccacaagtggtcgagtcatgtagtttcttttttac |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1938220 |
agactcttagtgtgactttaggtaatactatttcatcactgaatctataactagccaagtttgatccacaagtggtcgagtcatgtagtttcttttttac |
1938319 |
T |
|
| Q |
508 |
cattgttgaatatg |
521 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
1938320 |
cattgttgaatatg |
1938333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 427 - 521
Target Start/End: Original strand, 23751867 - 23751962
Alignment:
| Q |
427 |
aggtaatactatttcatcactgaatctataactagccaagtttgatccacaagtggtc-gagtcatgtagtttcttttttaccattgttgaatatg |
521 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
23751867 |
aggtagtactatttcatcactgaatctataactagccaagtttgattcacaagtggtctgagtcgtgtagtttcttttttaccattgttgaatatg |
23751962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University