View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20444_high_5 (Length: 234)
Name: NF20444_high_5
Description: NF20444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20444_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 13 - 218
Target Start/End: Complemental strand, 30258001 - 30257796
Alignment:
| Q |
13 |
cagagagcagatgtgaaagattgctgtcaatttgaggtggcccagagttcatgttaggatcctcttgcaaaattttagtaacttgaaaaatggaagtgta |
112 |
Q |
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| T |
30258001 |
cagagagcagatgtgaaagattgctgtcaatttgaggtggcccagagttcatgttaggatcctcttgcaaaattttagtaacttgaaaaatggaagtgta |
30257902 |
T |
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| Q |
113 |
aaactttggattaagtttatccggagacttgtaccggtatcgtctatgtggaggagtattgttttcggtccattcaattgtccatccaagataaacaaga |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30257901 |
aaactttggattaagtttatccggagacttgtaccggtatcgtctatgtggaggagtattgttttcggtccattcaattgtccatccaagataaacaaga |
30257802 |
T |
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| Q |
213 |
tgtttt |
218 |
Q |
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|||||| |
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| T |
30257801 |
tgtttt |
30257796 |
T |
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