View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20444_low_4 (Length: 286)
Name: NF20444_low_4
Description: NF20444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20444_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 65 - 270
Target Start/End: Original strand, 6073278 - 6073484
Alignment:
| Q |
65 |
aatagggaaaagaacaaaagaggtggtt-accttgctgaggaaagagagaagcggttacgatggtggcggtgacggagagagtgcaaatctccaccggaa |
163 |
Q |
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| T |
6073278 |
aatagggaaaagaacaaaagaggtggtttaccttgctgaggaaagagagaagcggttacgatggtggcggtgacggagagagtgcaaatctccaccggaa |
6073377 |
T |
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| Q |
164 |
caaaactccataacaatgcaagagaaatgagaagcttcaaactcagcatagagactaggaagaaaaggatgatcaagcatcttaagtatctttctctcca |
263 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6073378 |
caaaactccataacaatgcaagagaaatgagaagcttcaaactcagcatagagactaggaagaaaaggatgatcaagcatcttaagtatctttctctcca |
6073477 |
T |
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| Q |
264 |
tttccgc |
270 |
Q |
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||||||| |
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| T |
6073478 |
tttccgc |
6073484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 146 - 267
Target Start/End: Complemental strand, 37170412 - 37170291
Alignment:
| Q |
146 |
tgcaaatctccaccggaacaaaactccataacaatgcaagagaaatgagaagcttcaaactcagcatagagactaggaagaaaaggatgatcaagcatct |
245 |
Q |
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||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| | |
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| T |
37170412 |
tgcaagtcaccaccggaacaaaactccataacaatgcaagagaaatgagaagcttcaaactcagcgtagagtgtaggaagaaaaggatgatcaagcattt |
37170313 |
T |
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| Q |
246 |
taagtatctttctctccatttc |
267 |
Q |
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| T |
37170312 |
tcagaatctttctctccatttc |
37170291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 148 - 244
Target Start/End: Complemental strand, 46833791 - 46833695
Alignment:
| Q |
148 |
caaatctccaccggaacaaaactccataacaatgcaagagaaatgagaagcttcaaactcagcatagagactaggaagaaaaggatgatcaagcatc |
244 |
Q |
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|||||| ||||| | ||||||||||||||| | |||||| |||||||||| ||||| |||| ||| | | |||| | ||||||||||||||||||| |
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| T |
46833791 |
caaatcaccaccaggacaaaactccataaccaaacaagagtaatgagaagcatcaaaatcagtatacaaagtaggtaaaaaaggatgatcaagcatc |
46833695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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