View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20444_low_5 (Length: 272)
Name: NF20444_low_5
Description: NF20444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20444_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 19 - 256
Target Start/End: Original strand, 21830631 - 21830868
Alignment:
| Q |
19 |
cattcgtcaagttaacatgaatagaaccattaataatgctcaatctcatgcttaatatgtattgaagtaatatctcactttcttatttcttagtcatttg |
118 |
Q |
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| T |
21830631 |
cattcgtcaagttaacatgaatagaaccattaataatgctcaatctcatgcttaatatgtattgaagtaatatctcactttcttatttcttagtcatttg |
21830730 |
T |
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| Q |
119 |
ttccattctaggtaaggttttgatactcatgtatgcgataacattcaatcgcttctaatttctcaaatttttatttgtatgtgtctatgttgtatctagt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21830731 |
ttccattctaggtaaggttttgatactcatgtatgctataacattcaatcgcttctaatttctcaaatttttatttgtatgtgtctatgttgtatctagt |
21830830 |
T |
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| Q |
219 |
gtgtgtacaagttcttcattatacttttctttaatttc |
256 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
21830831 |
gtgtgtacaagttcttcattatacttttctttaatttc |
21830868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 19 - 110
Target Start/End: Original strand, 11791837 - 11791928
Alignment:
| Q |
19 |
cattcgtcaagttaacatgaatagaaccattaataatgctcaatctcatgcttaatatgtattgaagtaatatctcactttcttatttctta |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11791837 |
cattcgtcaagttaacatgaatagaaccattaataatgctcaatctcatgcttaatatgtattgaagtaatatctcactttcttatttctta |
11791928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 19 - 110
Target Start/End: Original strand, 45630658 - 45630749
Alignment:
| Q |
19 |
cattcgtcaagttaacatgaatagaaccattaataatgctcaatctcatgcttaatatgtattgaagtaatatctcactttcttatttctta |
110 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45630658 |
cattcgccaagttaacatgaatagaaccattaataatgctcaatctcatgcttaatatgtattgaagtaatatctcactttcttatttctta |
45630749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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