View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20444_low_7 (Length: 234)
Name: NF20444_low_7
Description: NF20444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20444_low_7 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 13 - 218
Target Start/End: Original strand, 2597252 - 2597457
Alignment:
| Q |
13 |
gagatgaaaaagcattgatggttcttagatttgaaactgcttcagcagctattttgctacactcatcttgagccgtgatggctttgcttaacatgttctt |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
2597252 |
gagatgaaaaagcattgatggttcttagatttgaaacagcttcagcagctattttgctacactcatcttgagccttgatggctttgcttaacatgttctt |
2597351 |
T |
|
| Q |
113 |
aagaaggacacgccttgtatagaaacaacatatgataactggttgcactactatcataacaatggctagtctccatgcaatgattaggcccattgtgaat |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
2597352 |
aagaaggacacgccttgtatagaaacaacatataataactggttgcactactatcataacaatggttagtctccatgcaatgattaggcccattgtgaat |
2597451 |
T |
|
| Q |
213 |
gctatt |
218 |
Q |
| |
|
|||||| |
|
|
| T |
2597452 |
gctatt |
2597457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 13 - 218
Target Start/End: Original strand, 2673071 - 2673276
Alignment:
| Q |
13 |
gagatgaaaaagcattgatggttcttagatttgaaactgcttcagcagctattttgctacactcatcttgagccgtgatggctttgcttaacatgttctt |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||| |||||||||| |
|
|
| T |
2673071 |
gagatgaaaaagcattgatggttcttagatttgaaactgcttcagcagctattttgctacattcatcttgggccttgatggctttgcttgacatgttctt |
2673170 |
T |
|
| Q |
113 |
aagaaggacacgccttgtatagaaacaacatatgataactggttgcactactatcataacaatggctagtctccatgcaatgattaggcccattgtgaat |
212 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
2673171 |
aagaaggacacgtcttgtatagaaacaacatatgataactggttgaactgctatcataacaatggcgagtctccatgcaatgattagtcccattgtgaat |
2673270 |
T |
|
| Q |
213 |
gctatt |
218 |
Q |
| |
|
|||||| |
|
|
| T |
2673271 |
gctatt |
2673276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 13 - 218
Target Start/End: Original strand, 2569696 - 2569901
Alignment:
| Q |
13 |
gagatgaaaaagcattgatggttcttagatttgaaactgcttcagcagctattttgctacactcatcttgagccgtgatggctttgcttaacatgttctt |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||| |
|
|
| T |
2569696 |
gagatgaaaaagcattgatggttcttagatttgaaacagcttcagcagctattttgctacactgatcttgagccttgatggctttgcttgacatgttctt |
2569795 |
T |
|
| Q |
113 |
aagaaggacacgccttgtatagaaacaacatatgataactggttgcactactatcataacaatggctagtctccatgcaatgattaggcccattgtgaat |
212 |
Q |
| |
|
|||||||||||||||||| ||||||||| | ||||||| |||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
2569796 |
aagaaggacacgccttgtgtagaaacaataaatgataagtggttgaactgctatcataacaatggctagtttccatgcaatgattaggcccattgtgaat |
2569895 |
T |
|
| Q |
213 |
gctatt |
218 |
Q |
| |
|
|||||| |
|
|
| T |
2569896 |
gctatt |
2569901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 13 - 218
Target Start/End: Complemental strand, 2591574 - 2591367
Alignment:
| Q |
13 |
gagatgaaaaagcattgatggttcttagatttgaaactgcttcagcagctattttgctacactcatcttgagccgtgatggctttgcttaacatgttctt |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||| |||||||||| ||| |||||||| | |
|
|
| T |
2591574 |
gagatgaaaaagcattgatggttcttagatttgaaacagcttcagcagctattttgctacattcatcttgggccttgatggcttttcttgacatgttcct |
2591475 |
T |
|
| Q |
113 |
aagaaggacacgccttgtatagaaacaacatatgataactggttgcactactatcataacaatggctagtctccatgcaatg--attaggcccattgtga |
210 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
2591474 |
aagaaggacacaccttgtatagaaacaacatatgataactggttgaactgctatcataacaatggctagtctccatgcaatgatattagtcccattgtga |
2591375 |
T |
|
| Q |
211 |
atgctatt |
218 |
Q |
| |
|
|||||||| |
|
|
| T |
2591374 |
atgctatt |
2591367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 13 - 218
Target Start/End: Complemental strand, 2623118 - 2622913
Alignment:
| Q |
13 |
gagatgaaaaagcattgatggttcttagatttgaaactgcttcagcagctattttgctacactcatcttgagccgtgatggctttgcttaacatgttctt |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||| ||| ||||||| || |||| ||||| |
|
|
| T |
2623118 |
gagatgaaaaagcattgatggttcttagatttgaaacagcttcagcagctattttgctacattcatcttgggccttgacggctttgtttgacatattctt |
2623019 |
T |
|
| Q |
113 |
aagaaggacacgccttgtatagaaacaacatatgataactggttgcactactatcataacaatggctagtctccatgcaatgattaggcccattgtgaat |
212 |
Q |
| |
|
|||||||||| |||||| ||||||||| ||||||||| |||||| ||| |||||||||||||||||| |||||||||||| | ||| |||||||||||| |
|
|
| T |
2623018 |
aagaaggacaaaccttgtgtagaaacaatatatgataattggttgaactgctatcataacaatggctaatctccatgcaataagtagtcccattgtgaat |
2622919 |
T |
|
| Q |
213 |
gctatt |
218 |
Q |
| |
|
|||||| |
|
|
| T |
2622918 |
gctatt |
2622913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 13 - 218
Target Start/End: Original strand, 2641911 - 2642116
Alignment:
| Q |
13 |
gagatgaaaaagcattgatggttcttagatttgaaactgcttcagcagctattttgctacactcatcttgagccgtgatggctttgcttaacatgttctt |
112 |
Q |
| |
|
||||||||||| |||||||||||| ||||||| ||| ||||||| ||||||||| ||||| |||||||| ||| |||||||||||||| |||| ||||| |
|
|
| T |
2641911 |
gagatgaaaaactattgatggttctaagatttgtaacagcttcagaagctattttactacattcatcttgggccttgatggctttgcttgacatattctt |
2642010 |
T |
|
| Q |
113 |
aagaaggacacgccttgtatagaaacaacatatgataactggttgcactactatcataacaatggctagtctccatgcaatgattaggcccattgtgaat |
212 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
2642011 |
gagaaggacacgccttgtgtagaaacaacatatgataaggggttgaactgctatcataacaatggctagtctccatgcgatgattaaacccattgtgaat |
2642110 |
T |
|
| Q |
213 |
gctatt |
218 |
Q |
| |
|
| |||| |
|
|
| T |
2642111 |
gatatt |
2642116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 15 - 208
Target Start/End: Complemental strand, 2439623 - 2439430
Alignment:
| Q |
15 |
gatgaaaaagcattgatggttcttagatttgaaactgcttcagcagctattttgctacactcatcttgagccgtgatggctttgcttaacatgttcttaa |
114 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||| |||||||||||||||||||||| |||||||||||| | |||||||| ||| ||||||| |||| |
|
|
| T |
2439623 |
gatgaaaaagatgtgatgattcttagatttgaaacagcttcagcagctattttgctactgtcatcttgagccttaatggctttacttgacatgttattaa |
2439524 |
T |
|
| Q |
115 |
gaaggacacgccttgtatagaaacaacatatgataactggttgcactactatcataacaatggctagtctccatgcaatgattaggcccattgt |
208 |
Q |
| |
|
|||| ||||| ||||| ||| ||||| | ||| ||| |||||| ||| |||||||||||||| ||||||||||| ||| ||||| |||||||| |
|
|
| T |
2439523 |
gaagaacacgtcttgtgtagtaacaaaaaatggtaattggttgaactgatatcataacaatggatagtctccatgtaataattagacccattgt |
2439430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 213
Target Start/End: Complemental strand, 2450350 - 2450150
Alignment:
| Q |
13 |
gagatgaaaaagcattgatggttcttagatttgaaactgcttcagcagctattttgctacactcatcttgagccgtgatggctttgcttaacatgttctt |
112 |
Q |
| |
|
|||||||||||||| | |||||||| | ||| ||||| |||||| | ||||||||||||| | |||||| || || ||||| ||| |||| |||| |
|
|
| T |
2450350 |
gagatgaaaaagcagttatggttctaatattcgaaacagcttcaactgctattttgctacttttatcttgggcttcaattgcttttcttgacattctctt |
2450251 |
T |
|
| Q |
113 |
aagaaggacacgccttgtatagaaacaacatatgataactggttgcactactatcataacaatggctagtctccatgcaatgattaggcccattgtgaat |
212 |
Q |
| |
|
||||||| || |||||| ||||||||| ||| || |||||| ||| ||||||||||||| | ||||||||||| ||||||||| |||||| ||||| |
|
|
| T |
2450250 |
aagaagggaactccttgtgtagaaacaaaccatgtgaattggttgaactgctatcataacaattgatagtctccatgtaatgattagtcccattatgaat |
2450151 |
T |
|
| Q |
213 |
g |
213 |
Q |
| |
|
| |
|
|
| T |
2450150 |
g |
2450150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 15 - 218
Target Start/End: Complemental strand, 53393628 - 53393422
Alignment:
| Q |
15 |
gatgaaaaagcattgatggttcttagatttgaaactgcttcagcagctattttgctacactcatcttgagccgtgatggc---tttgcttaacatgttct |
111 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||| ||| | ||||||||| ||||| |||||||| ||| ||||||| ||||||| |||| |||| |
|
|
| T |
53393628 |
gatgaaaaagcattgatggttctaagatttgtaacaactttcgaagctattttactacattcatcttgggccttgatggcgcctttgcttgacatattct |
53393529 |
T |
|
| Q |
112 |
taagaaggacacgccttgtatagaaacaacatatgataactggttgcactactatcataacaatggctagtctccatgcaatgattaggcccattgtgaa |
211 |
Q |
| |
|
| ||||||| || ||||||||||||| ||| ||||||| ||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
53393528 |
tgagaaggatgcgtcttgtatagaaactacagatgataagtggttttactgctatcataacaatggctagtctccatgcaatgattaaacccattgtgaa |
53393429 |
T |
|
| Q |
212 |
tgctatt |
218 |
Q |
| |
|
|| |||| |
|
|
| T |
53393428 |
tgatatt |
53393422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University