View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20445_high_1 (Length: 806)
Name: NF20445_high_1
Description: NF20445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20445_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 675; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 675; E-Value: 0
Query Start/End: Original strand, 17 - 789
Target Start/End: Complemental strand, 3082596 - 3081820
Alignment:
| Q |
17 |
agaagccagcattcaaacaacttccaccacctagaacacgagctcttgaattaataacaccatcttcagaaatgaatcgttgagcaggagaagaaggaga |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3082596 |
agaagccagcattcaaacaacttccaccacctagaacacgagctcttgaattaataacaccatcttcagaaatgaatcgttgagcaggagaagaaggaga |
3082497 |
T |
|
| Q |
117 |
tgtatcagagagtggaacaccataggcacttaaattggttatgtttggattcccataaggtgatccaccacgttcaagcaccaaaaccctatgattttgg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3082496 |
tgtatcagagagtggaacaccataggcacttaaattggttatgtttggattcccataaggtgatccaccacgttcaagcaccaaaaccctatgattttgg |
3082397 |
T |
|
| Q |
217 |
gacagtgttgcagccaaaggacaccctgcagtgccaccaccaattatgatgtaatcatagaaggatatgattggtgctgaagttgcatcttgcataaaac |
316 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
3082396 |
gacagtgttgcagccaaaggacaccctgcggtgccaccaccaactatgatgtaatcatagtaggatatgattggtgctgaagttgcatcttgcataaaac |
3082297 |
T |
|
| Q |
317 |
tgtattttctacctgtatctgtatataatcatgannnnnnnna---gttttacaccttttccaattgctagcaacatttacttattggtaaataaaataa |
413 |
Q |
| |
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|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3082296 |
tgtattttctacctgtatctgtatataatcatgattttttttattagttttacaccttttccaattgctagcaacatttacttattggtaaataaaataa |
3082197 |
T |
|
| Q |
414 |
aacgttaggtaattttctataggttgattaaaatagggttggtttgtctgtctcgtagttcatatagtaaaatattgcagggatatttactacgtgggtt |
513 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
3082196 |
aaccttaggtaattttctataggttgattaaaatagggttggtttgtttgtctcgtagttcatatagtaaaatatggaagggatatttactacgtgggtt |
3082097 |
T |
|
| Q |
514 |
agggttcaaacttgcaatatctctcttccgccactaagctttttgaaataaacctctttattttggtggggaatagtaaattactttgagaaaatataca |
613 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3082096 |
agggttcaaacttgcaatatctctcttccgccactaagctttttgaaataaacctctttattttggtggggaatagtaaattactttgagaaaatataca |
3081997 |
T |
|
| Q |
614 |
tcagcttcacatgctgatattatcatggtaagttctacatattttaagagtgaaagcaaatattaaaatgaaatcttttttattaggggagacattaatt |
713 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3081996 |
tcagcttcacatgctgatattatcatggtaagttctacatattttaagagtgaaagcaaatattaaaatgaaatcttttttattaggggagacattaatt |
3081897 |
T |
|
| Q |
714 |
gtacgttgcaccactcatgg-nnnnnnnntacgaccttgcaacccattcaaggagagacaggcactagaccagttga |
789 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
3081896 |
gtacgttgcaccactcatggaaaaaaaaatacgaccttgcaacccattcaaggagagacaggtactagaccagttga |
3081820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 17 - 461
Target Start/End: Complemental strand, 3090952 - 3090505
Alignment:
| Q |
17 |
agaagccagcattcaaacaacttccaccacctagaacacgagctcttgaattaataacaccatcttcagaaatgaatcgttgagcaggagaagaaggaga |
116 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
3090952 |
agaagccggcattcaaacaacttccaccacctagaacacgagctcttgaattaataacaccatcttcagaaatgaatcgttgagcaggagaggaaggaga |
3090853 |
T |
|
| Q |
117 |
tgtatcagagagtggaacaccataggcacttaaattggttatgtttggattcccataaggtgatccaccacgttcaagcaccaaaaccctatgattttgg |
216 |
Q |
| |
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|| |||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
3090852 |
tggatcagaaagtgcaacaccaaaggcacttaaattggttatgtttggattcccataaggtgatccaccacgttcaagcaccaaaaccctatgatttttg |
3090753 |
T |
|
| Q |
217 |
gacagtgttgcagccaaaggacaccctgcagtgccaccaccaattatgatgtaatcatagaaggatatgattggtgctgaagttgcatcttgcataaaac |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3090752 |
gacagtgttgcagccaaaggacaccctgcagtgccaccaccaattatgatgtaatcatagaaggatatgattggtgctgaagttgcatcttgcataaaac |
3090653 |
T |
|
| Q |
317 |
tgtattttctacctgtatctgtatataatcatga---nnnnnnnnagttttacaccttttccaattgctagcaacatttacttattggtaaataaaataa |
413 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
3090652 |
tgtattttctacctgtatctgtatataatcatgattttttttattagttttacaccttttccaattgctagcaacatttatttattggtaaataaaataa |
3090553 |
T |
|
| Q |
414 |
aacgttaggtaattttctataggttgattaaaatagggttggtttgtc |
461 |
Q |
| |
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||| |||||||| ||||||||||||||||| ||| | |||||||||| |
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|
| T |
3090552 |
aaccctaggtaatgttctataggttgattaatatatgtttggtttgtc |
3090505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 222 - 275
Target Start/End: Complemental strand, 5499501 - 5499448
Alignment:
| Q |
222 |
tgttgcagccaaaggacaccctgcagtgccaccaccaattatgatgtaatcata |
275 |
Q |
| |
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||||||||| ||||||||||||||||| ||||| || | ||| ||||||||||| |
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|
| T |
5499501 |
tgttgcagctaaaggacaccctgcagttccacctcccactattatgtaatcata |
5499448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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