View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20445_high_12 (Length: 250)

Name: NF20445_high_12
Description: NF20445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20445_high_12
NF20445_high_12
[»] chr2 (6 HSPs)
chr2 (1-240)||(14277628-14277873)
chr2 (135-239)||(14315905-14316009)
chr2 (139-237)||(14299198-14299295)
chr2 (4-52)||(22878191-22878239)
chr2 (4-64)||(37276837-37276897)
chr2 (2-50)||(40944004-40944052)
[»] chr8 (7 HSPs)
chr8 (164-237)||(25881270-25881343)
chr8 (5-46)||(25881350-25881391)
chr8 (1-53)||(2364388-2364440)
chr8 (4-63)||(1892142-1892201)
chr8 (4-47)||(8535989-8536032)
chr8 (4-50)||(2487939-2487985)
chr8 (12-52)||(7008699-7008739)
[»] chr6 (4 HSPs)
chr6 (6-52)||(7351600-7351646)
chr6 (5-47)||(27894127-27894169)
chr6 (1-50)||(31774467-31774516)
chr6 (12-68)||(3153590-3153646)
[»] chr4 (3 HSPs)
chr4 (5-49)||(22523774-22523818)
chr4 (12-63)||(32071964-32072015)
chr4 (5-52)||(33534098-33534145)
[»] chr3 (5 HSPs)
chr3 (1-49)||(30657376-30657424)
chr3 (3-49)||(41033188-41033234)
chr3 (1-65)||(26542627-26542690)
chr3 (19-51)||(27888543-27888575)
chr3 (5-49)||(49605783-49605827)
[»] chr1 (4 HSPs)
chr1 (4-63)||(33204312-33204370)
chr1 (7-52)||(46504147-46504192)
chr1 (4-52)||(6292585-6292633)
chr1 (4-48)||(32515374-32515418)
[»] chr7 (2 HSPs)
chr7 (1-51)||(24048630-24048680)
chr7 (4-49)||(8427106-8427151)
[»] scaffold0141 (1 HSPs)
scaffold0141 (4-49)||(9710-9755)
[»] chr5 (3 HSPs)
chr5 (3-52)||(25079497-25079546)
chr5 (3-52)||(25137466-25137515)
chr5 (7-51)||(6749429-6749473)


Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 14277873 - 14277628
Alignment:
Q  1 cttccaaacactctcacaagtacttatgtccgtagataaactcaaataagtcggtctaaacaggtcctacttaacgaactttgcagtataaaatcattta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  14277873 cttccaaacactctcacaagtacttatgtccgtagataaactcaaataagtcggtctaaacaggtcctacttaacgaactttgtagtataaaatcattta 14277774  T
Q  101 tttatttacttgatctc-----tttgacaaacttgatcacattatacttataat-atttaggtaaatataaaagatgtctaactgacaaaaaattgttcc 194  Q
    |||||||||||||||||     |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  14277773 tttatttacttgatctcttttttttgacaaacttgatcacattatacttataataatttaggtaaatataaaagatgtctaactgacaaagaattgttcc 14277674  T
Q  195 acttggatataatttgggttttgcagaatatgttggtatgtctctg 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  14277673 acttggatataatttgggttttgcagaatatgttggtatgtctctg 14277628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 135 - 239
Target Start/End: Complemental strand, 14316009 - 14315905
Alignment:
Q  135 cattatacttataatatttaggtaaatataaaagatgtctaactgacaaaaaattgttccacttggatataatttgggttttgcagaatatgttggtatg 234  Q
    ||||||||||||||||||||| ||||||| ||||||||||  || ||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||    
T  14316009 cattatacttataatatttagataaatatgaaagatgtcttcctaacaaagaattgttccacttggatataattttggttttgcagaatatgttggtttg 14315910  T
Q  235 tctct 239  Q
    |||||    
T  14315909 tctct 14315905  T

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Target: chr2; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 139 - 237
Target Start/End: Complemental strand, 14299295 - 14299198
Alignment:
Q  139 atacttataatatttaggtaaatataaaagatgtctaactgacaaaaaattgttccacttggatataatttgggttttgcagaatatgttggtatgtct 237  Q
    |||||| ||||||||||||||||||||||||||||  |||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  14299295 atacttttaatatttaggtaaatataaaagatgtcctactgacaagaa-ttgttccacttggatataattttggttttgcagaatatgttggtatgtct 14299198  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 22878191 - 22878239
Alignment:
Q  4 ccaaacactctcacaagtacttatgtccgtagataaactcaaataagtc 52  Q
    ||||||| |||||||||| |||||||| || ||||| ||||||||||||    
T  22878191 ccaaacagtctcacaagtgcttatgtcagtggataagctcaaataagtc 22878239  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 37276837 - 37276897
Alignment:
Q  4 ccaaacactctcacaagtacttatgtccgtagataaactcaaataagtcggtctaaacagg 64  Q
    ||||||| |||||||||| ||||| |  ||||||||||| |||||||||| || |||||||    
T  37276837 ccaaacagtctcacaagtgcttatattagtagataaacttaaataagtcgatccaaacagg 37276897  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 40944004 - 40944052
Alignment:
Q  2 ttccaaacactctcacaagtacttatgtccgtagataaactcaaataag 50  Q
    ||||||||| | |||||||| ||||||||  ||||||||||||||||||    
T  40944004 ttccaaacagtttcacaagtgcttatgtcattagataaactcaaataag 40944052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 164 - 237
Target Start/End: Complemental strand, 25881343 - 25881270
Alignment:
Q  164 aaaagatgtctaactgacaaaaaattgttccacttggatataatttgggttttgcagaatatgttggtatgtct 237  Q
    ||||||||||||| ||| ||| || | || ||||||||||||||||| ||||||||||||||||||||||||||    
T  25881343 aaaagatgtctaattgaaaaataacttttgcacttggatataatttgtgttttgcagaatatgttggtatgtct 25881270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 25881391 - 25881350
Alignment:
Q  5 caaacactctcacaagtacttatgtccgtagataaactcaaa 46  Q
    |||||| ||||||||||||||||||| |||||||||||||||    
T  25881391 caaacagtctcacaagtacttatgtcagtagataaactcaaa 25881350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 2364440 - 2364388
Alignment:
Q  1 cttccaaacactctcacaagtacttatgtccgtagataaactcaaataagtcg 53  Q
    |||||||||| ||||||||||||||||||| | ||||||  ||||||||||||    
T  2364440 cttccaaacagtctcacaagtacttatgtcagaagataagttcaaataagtcg 2364388  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 63
Target Start/End: Complemental strand, 1892201 - 1892142
Alignment:
Q  4 ccaaacactctcacaagtacttatgtccgtagataaactcaaataagtcggtctaaacag 63  Q
    ||||||| ||||||||||  ||||| | |||||||||||||||||||||  |||||||||    
T  1892201 ccaaacaatctcacaagtgtttatgacggtagataaactcaaataagtcaatctaaacag 1892142  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 47
Target Start/End: Complemental strand, 8536032 - 8535989
Alignment:
Q  4 ccaaacactctcacaagtacttatgtccgtagataaactcaaat 47  Q
    ||||||| ||||||||||||||||||| ||||||||| ||||||    
T  8536032 ccaaacagtctcacaagtacttatgtcagtagataaattcaaat 8535989  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 50
Target Start/End: Complemental strand, 2487985 - 2487939
Alignment:
Q  4 ccaaacactctcacaagtacttatgtccgtagataaactcaaataag 50  Q
    ||||||| |||||||||| |||||||| |||||| ||||||||||||    
T  2487985 ccaaacagtctcacaagtgcttatgtcagtagatgaactcaaataag 2487939  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 52
Target Start/End: Original strand, 7008699 - 7008739
Alignment:
Q  12 tctcacaagtacttatgtccgtagataaactcaaataagtc 52  Q
    |||||||||| |||||| | |||||||||||||||||||||    
T  7008699 tctcacaagtgcttatgccagtagataaactcaaataagtc 7008739  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 52
Target Start/End: Complemental strand, 7351646 - 7351600
Alignment:
Q  6 aaacactctcacaagtacttatgtccgtagataaactcaaataagtc 52  Q
    ||||| |||||||||| |||||||| |||||||||||||||||||||    
T  7351646 aaacaatctcacaagtgcttatgtcagtagataaactcaaataagtc 7351600  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 27894127 - 27894169
Alignment:
Q  5 caaacactctcacaagtacttatgtccgtagataaactcaaat 47  Q
    |||||| |||||||||||||||||||||||| ||| |||||||    
T  27894127 caaacagtctcacaagtacttatgtccgtaggtaagctcaaat 27894169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 31774467 - 31774516
Alignment:
Q  1 cttccaaacactctcacaagtacttatgtccgtagataaactcaaataag 50  Q
    |||||||||| ||||| |||| |||||| | |||||||||||||||||||    
T  31774467 cttccaaacagtctcataagtgcttatgccggtagataaactcaaataag 31774516  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 68
Target Start/End: Original strand, 3153590 - 3153646
Alignment:
Q  12 tctcacaagtacttatgtccgtagataaactcaaataagtcggtctaaacaggtcct 68  Q
    |||||||||||||||| ||  ||||||||||||||||||||  |  |||||||||||    
T  3153590 tctcacaagtacttatatctatagataaactcaaataagtcaatgcaaacaggtcct 3153646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 22523774 - 22523818
Alignment:
Q  5 caaacactctcacaagtacttatgtccgtagataaactcaaataa 49  Q
    |||||| ||||||||||||||||||| |||||||||||| |||||    
T  22523774 caaacagtctcacaagtacttatgtcagtagataaactcgaataa 22523818  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 32071964 - 32072015
Alignment:
Q  12 tctcacaagtacttatgtccgtagataaactcaaataagtcggtctaaacag 63  Q
    |||||||||| ||||||||  |||||||||||||||||||| ||| ||||||    
T  32071964 tctcacaagtgcttatgtcaatagataaactcaaataagtcagtccaaacag 32072015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 52
Target Start/End: Complemental strand, 33534145 - 33534098
Alignment:
Q  5 caaacactctcacaagtacttatgtccgtagataaactcaaataagtc 52  Q
    |||| |||||||||||||||||||||  ||||||| ||||||||||||    
T  33534145 caaatactctcacaagtacttatgtcactagataagctcaaataagtc 33534098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 30657376 - 30657424
Alignment:
Q  1 cttccaaacactctcacaagtacttatgtccgtagataaactcaaataa 49  Q
    |||||||||| ||||| |||| |||||||| ||||||||||||||||||    
T  30657376 cttccaaacaatctcaaaagtgcttatgtcagtagataaactcaaataa 30657424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 41033234 - 41033188
Alignment:
Q  3 tccaaacactctcacaagtacttatgtccgtagataaactcaaataa 49  Q
    |||||||| |||||| ||| |||||||| ||||||||||||||||||    
T  41033234 tccaaacagtctcacgagtccttatgtcagtagataaactcaaataa 41033188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 26542627 - 26542690
Alignment:
Q  1 cttccaaacactctcacaagtacttatgtccgtagataaactcaaataagtcggtctaaacaggt 65  Q
    |||||||||| ||| ||||||||||||||  ||||||||| |||||||||||  |||||| ||||    
T  26542627 cttccaaacagtcttacaagtacttatgtgagtagataaa-tcaaataagtcaatctaaagaggt 26542690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 27888575 - 27888543
Alignment:
Q  19 agtacttatgtccgtagataaactcaaataagt 51  Q
    ||||||| |||||||||||||||||||||||||    
T  27888575 agtacttgtgtccgtagataaactcaaataagt 27888543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 49605827 - 49605783
Alignment:
Q  5 caaacactctcacaagtacttatgtccgtagataaactcaaataa 49  Q
    ||||||||||||||||||||||||   | ||||||||||||||||    
T  49605827 caaacactctcacaagtacttatgctagaagataaactcaaataa 49605783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 63
Target Start/End: Complemental strand, 33204370 - 33204312
Alignment:
Q  4 ccaaacactctcacaagtacttatgtccgtagataaactcaaataagtcggtctaaacag 63  Q
    ||||||| ||||||||  ||||||||| |||||||| ||||||||||||| |||||||||    
T  33204370 ccaaacagtctcacaaa-acttatgtcagtagataagctcaaataagtcgatctaaacag 33204312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 46504192 - 46504147
Alignment:
Q  7 aacactctcacaagtacttatgtccgtagataaactcaaataagtc 52  Q
    |||| |||||||| |||||||| | |||||||||||||||||||||    
T  46504192 aacagtctcacaaatacttatgccggtagataaactcaaataagtc 46504147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 6292585 - 6292633
Alignment:
Q  4 ccaaacactctcacaagtacttatgtccgtagataaactcaaataagtc 52  Q
    ||||||| ||||| |||| |||||||| |||||||| ||||||||||||    
T  6292585 ccaaacaatctcaaaagtgcttatgtcagtagataagctcaaataagtc 6292633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 32515418 - 32515374
Alignment:
Q  4 ccaaacactctcacaagtacttatgtccgtagataaactcaaata 48  Q
    ||||||| |||||||||| |||||||  |||||||||||||||||    
T  32515418 ccaaacagtctcacaagtgcttatgttagtagataaactcaaata 32515374  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 24048630 - 24048680
Alignment:
Q  1 cttccaaacactctcacaagtacttatgtccgtagataaactcaaataagt 51  Q
    |||||||||| |||   ||||||||||||| ||||||||||||||||||||    
T  24048630 cttccaaacagtcttttaagtacttatgtcagtagataaactcaaataagt 24048680  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 8427106 - 8427151
Alignment:
Q  4 ccaaacactctcacaagtacttatgtccgtagataaactcaaataa 49  Q
    ||||||| ||||||||||||||||||  |||||||| |||||||||    
T  8427106 ccaaacagtctcacaagtacttatgttagtagataagctcaaataa 8427151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 9755 - 9710
Alignment:
Q  4 ccaaacactctcacaagtacttatgtccgtagataaactcaaataa 49  Q
    ||||||| ||||||||||| ||||||  ||||||||||||||||||    
T  9755 ccaaacagtctcacaagtatttatgttagtagataaactcaaataa 9710  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 25079546 - 25079497
Alignment:
Q  3 tccaaacactctcacaagtacttatgtccgtagataaactcaaataagtc 52  Q
    |||||| | |||||||||| |||||||||||||||| ||| |||||||||    
T  25079546 tccaaatagtctcacaagtgcttatgtccgtagatacacttaaataagtc 25079497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 25137515 - 25137466
Alignment:
Q  3 tccaaacactctcacaagtacttatgtccgtagataaactcaaataagtc 52  Q
    |||||| | |||||||||| |||||||||||||||| ||| |||||||||    
T  25137515 tccaaatagtctcacaagtgcttatgtccgtagatacacttaaataagtc 25137466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 51
Target Start/End: Original strand, 6749429 - 6749473
Alignment:
Q  7 aacactctcacaagtacttatgtccgtagataaactcaaataagt 51  Q
    |||| ||||||||||||||||||||| | |||| |||||||||||    
T  6749429 aacagtctcacaagtacttatgtccgcatataatctcaaataagt 6749473  T

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