View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20445_high_3 (Length: 351)
Name: NF20445_high_3
Description: NF20445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20445_high_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 6891488 - 6891152
Alignment:
| Q |
1 |
catgccacacttaaagtaccttactcaaacttcacaaaattcacttccttcaagttacatatatcttatggataatactttaccaagaactcatatctaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6891488 |
catgccacacttaaagtaccttactcaaacttcacaaaattcacttccttcaagttacatatatcttatggataatactttaccaagaactcatatctaa |
6891389 |
T |
|
| Q |
101 |
acaaaccccatgtgatctccaccccccttctttctagacgtttacggacatggctccaccattgttctgcttccccagttaacatgagcgctgccatata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
6891388 |
acaaaccccatgtgatctccaccccccttctttctagacgtttacggacatggctccaccattgttctgcttccccagttaacatgagtgctgccatata |
6891289 |
T |
|
| Q |
201 |
cactttatgatcctctgggcaagaaattcctctaagaacattttcaatctcttgcatccatctttctgctccattagggttatagtgaccctcaaagatc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6891288 |
cactttatgatcctctgggcaagaaattcctctaagaacattttcaatctcttgcatccatctttctgctccattagggttatagtgaccctcaaagatt |
6891189 |
T |
|
| Q |
301 |
ggaggattcgcctggtcgaaacgacccatcaccgtga |
337 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6891188 |
ggaggattcgcctggtcgaaacgacccatcaccgtga |
6891152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University