View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20445_low_17 (Length: 213)
Name: NF20445_low_17
Description: NF20445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20445_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 18 - 198
Target Start/End: Complemental strand, 13892992 - 13892812
Alignment:
| Q |
18 |
gttataaggtggactggttggacaatgttccgctaaagaattaccgtgatgaataaatagaagaaggatcgtaaatgcaatgagaatgaaggtaatttcc |
117 |
Q |
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| T |
13892992 |
gttataaggtggactgattggacaatgttccgctaaagaattattgtgatgaataaatggaagaaggatcgtaaatgcaatgagaatgaaggtaatttcc |
13892893 |
T |
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| Q |
118 |
ttgatgattgaaatgatagtgcaatgcttagattttttaaagtttttacaataggggtatttatgtagttataatgttcat |
198 |
Q |
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| T |
13892892 |
ttgatgattgaaatgatagtgcaatgcttagattttttaaagtttttacaataggggtatttatgtaattataatgttcat |
13892812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 18 - 198
Target Start/End: Original strand, 6051644 - 6051825
Alignment:
| Q |
18 |
gttataaggtggactggttggacaatgttccgctaaagaattaccgtgatgaataaatagaagaaggatcgtaaatgcaatgagaatgaaggtaatttcc |
117 |
Q |
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| T |
6051644 |
gttataaggtggactggttggacaatgttccgctaaagaattaccgtgatgaataaatggaagaaggatcgtaaatgcaatgagaatgaaggtaatttcc |
6051743 |
T |
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| Q |
118 |
ttgatgattgaaatgatagtgcaatgcttaga-ttttttaaagtttttacaataggggtatttatgtagttataatgttcat |
198 |
Q |
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| T |
6051744 |
ttgatgattgaaatgatagtgcagtgcttagatttttttaaagtttttacaataggggtacttatgtaattataatgttcat |
6051825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 134; Significance: 6e-70; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 18 - 198
Target Start/End: Original strand, 44306953 - 44307134
Alignment:
| Q |
18 |
gttataaggtggactggttggacaatgttccgctaaagaattaccgtgatgaataaatagaagaaggatcgtaaatgcaatgagaatgaaggtaatttcc |
117 |
Q |
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| T |
44306953 |
gttataaggtggactggttggacaattaatcgctaaagaattaccgtgatgaataaatgaaagaaggatcgtaaatgcaatgagaacgaatgtaatttcc |
44307052 |
T |
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| Q |
118 |
ttgatgattgaaatgatagtgcaatgcttagattttttaaag-tttttacaataggggtatttatgtagttataatgttcat |
198 |
Q |
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| T |
44307053 |
ttgatgattgaaatgatagtgcaatgcttagatttttttaagttttttacaataggggtatttatgtaattataatgttcat |
44307134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 18 - 198
Target Start/End: Complemental strand, 46883774 - 46883600
Alignment:
| Q |
18 |
gttataaggtggactggttggacaatgttccgctaaagaattaccgtgatgaataaatagaagaaggatcgtaaatgcaatgagaatgaaggtaatttcc |
117 |
Q |
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| T |
46883774 |
gttataaggtggactggttggaaaatgttcccctagagaattaccgtgatgaataaatggaagaaggatcgtaaatgcaatga------aggtaatttcc |
46883681 |
T |
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| Q |
118 |
ttgatgattgaaatgatagtgcaatgcttagattttttaaagtttttacaataggggtatttatgtagttataatgttcat |
198 |
Q |
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| T |
46883680 |
ttgatgattgaaatgatagtgcaatgcttagattttgtaatgtttttacaataggggtatttatgtaattataatgttcat |
46883600 |
T |
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