View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20445_low_2 (Length: 719)
Name: NF20445_low_2
Description: NF20445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20445_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 650; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 650; E-Value: 0
Query Start/End: Original strand, 10 - 675
Target Start/End: Complemental strand, 9431487 - 9430822
Alignment:
| Q |
10 |
agcagcacagatcaagacaaagtcctaaagaaaccagacaagattgttcaatgtccaagatgcaaaagtttcgacacaaaattttgttatttcaacaact |
109 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9431487 |
agcagcacagatcaagacaaagtcctaaagaaaccagacaagattgttcaatgtccaagatgcaaaagtttcgacacaaaattttgttatttcaacaact |
9431388 |
T |
|
| Q |
110 |
acaatgtcaatcaacctcggcatttttgtcggagttgtcacagatattggaccaacggtggaacaatgagaaacgttgctgttggtgcagggagacggaa |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9431387 |
acaatgtcaatcaacctcggcatttttgtcggagttgtcacagatattggaccaacggtggaacaatgagaaacgttgctgttggtgcagggagacggaa |
9431288 |
T |
|
| Q |
210 |
gaacaaacacatagcttctcaatatcgtcatatgattgtagcgtccgatggaattccgactgctagtttagaaaccaatgactcttctaggtaccaacat |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9431287 |
gaacaaacacatagcttctcaatatcgtcatatgattgtagcgtccgatggaattccgactgctagtttagaaaccaatgactcttctaggtaccaacat |
9431188 |
T |
|
| Q |
310 |
ggctcaaatcttgaatctgctgcggtttttaggtgttcaaatgataatggtattgtcctaaaatttggtcgggaaaatgcctcgctcgatgaatccaaag |
409 |
Q |
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| T |
9431187 |
ggctcaaatcttgaatctgctgcagtttttaggtgttcaaatgataatggtattgtcctaaaatttggtcgggaaaatgcctcgctcgatgaatccaaag |
9431088 |
T |
|
| Q |
410 |
gttcaatgcttaatcttatgaacaccaggagacatgttgatgcaagtggtaataattgtagagaaaatggagaggaagaatcatcattatgtgtatcgtc |
509 |
Q |
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| T |
9431087 |
gttcaatgcttaatcttatgaacaacaggagacatgttgatgcaagtggtaataattgtagagaaaatggagaggaagaaacatcgttatgtgtatcgtc |
9430988 |
T |
|
| Q |
510 |
tgtgacaaacggtcatactcgaggaaacgagttattcgaatccgaacagaataggtctaaacctatgcagagctaccctgcatcttcatggataattcca |
609 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9430987 |
tgtgacaaacggtcatactcgaggaaacgagttattcgaatccgaacagaataggtctaaacctatgcagagctaccctgcatcttcatggataattcca |
9430888 |
T |
|
| Q |
610 |
atgaatcaaagatggaacaatgttacttctatggttcaatcatcaatgcagatgtgtaacccttat |
675 |
Q |
| |
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| T |
9430887 |
atgaatcaaagatggaacaatgttacttctatggttcaatcatcaatgcagatgtgtaacccttat |
9430822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 155; E-Value: 7e-82
Query Start/End: Original strand, 10 - 264
Target Start/End: Complemental strand, 9424156 - 9423902
Alignment:
| Q |
10 |
agcagcacagatcaagacaaagtcctaaagaaaccagacaagattgttcaatgtccaagatgcaaaagtttcgacacaaaattttgttatttcaacaact |
109 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||| |
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| T |
9424156 |
agcagcacagatcaagacaaagtcttaaagaaacccgacaaaattgttcaatgtccaagatgcaacagtttcgacacgaaattttgttatttcaataact |
9424057 |
T |
|
| Q |
110 |
acaatgtcaatcaacctcggcatttttgtcggagttgtcacagatattggaccaacggtggaacaatgagaaacgttgctgttggtgcagggagacggaa |
209 |
Q |
| |
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| ||||||| ||||||||||||||||||||||| ||||| ||||||||||| |||||||| ||||||||||||| || | |||||||||||||||| |
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| T |
9424056 |
ataatgtcagtcaacctcggcatttttgtcggaaatgtcatagatattggactgccggtggaaaaatgagaaacgttcctttcggtgcagggagacggag |
9423957 |
T |
|
| Q |
210 |
gaacaaacacatagcttctcaatatcgtcatatgattgtagcgtccgatggaatt |
264 |
Q |
| |
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|||||| || ||||||||||||||||| || ||||||||||| |||| ||||||| |
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| T |
9423956 |
gaacaagcagatagcttctcaatatcgccacatgattgtagcttccggtggaatt |
9423902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 322 - 675
Target Start/End: Complemental strand, 9423865 - 9423524
Alignment:
| Q |
322 |
gaatctgctgcggtttttaggtgttcaaatgataatggtattgtcctaaaatttggtcgggaaaatgcctcgctcgatgaatccaaaggttcaatgctta |
421 |
Q |
| |
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||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||| |||||||| |||| || | ||| || ||| |
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| T |
9423865 |
gaatctgctgcggttttcaggtgctcaaataataatggtattgtcctaaaatttggtccggaaaatg------------aatctaacgattcgatcttta |
9423778 |
T |
|
| Q |
422 |
atcttatgaacaccaggagacatgttgatgcaagtggtaataattgtagagaaaatggagaggaagaatcatcattatgtgtatcgtctgtgacaaacgg |
521 |
Q |
| |
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||| || ||| || |||| |||||||||||| || ||| ||||||||||||||||| || |||||||||||||||||| |||| ||| |||||||||| |
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| T |
9423777 |
atcctaacaaccacaagagaaatgttgatgcaaatgctaacaattgtagagaaaatggggatgaagaatcatcattatgtctatcttctctgacaaacgg |
9423678 |
T |
|
| Q |
522 |
tcatactcgaggaaacgagttattcgaatccgaacagaataggtctaaacctatgcagagctaccctgcatcttcatggataattccaatgaatcaaaga |
621 |
Q |
| |
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| ||||||||||||||||||||| |||||||||||| |||||||| ||||| |||||| ||| |||||||||||||||| |||||| |||||||||| |
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| T |
9423677 |
ttatactcgaggaaacgagttatccgaatccgaacataataggtcaaaaccattgcagaattactctgcatcttcatggatgattccactgaatcaaagc |
9423578 |
T |
|
| Q |
622 |
tggaacaatgttacttctatggttcaatcatcaatgcagatgtgtaacccttat |
675 |
Q |
| |
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| ||||||||||||||| ||||||||||| ||||||||||||||| |||||||| |
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| T |
9423577 |
ttgaacaatgttacttccatggttcaatcttcaatgcagatgtgtcacccttat |
9423524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 3e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 16 - 233
Target Start/End: Original strand, 33751940 - 33752157
Alignment:
| Q |
16 |
acagatcaagacaaagtcctaaagaaaccagacaagattgttcaatgtccaagatgcaaaagtttcgacacaaaattttgttatttcaacaactacaatg |
115 |
Q |
| |
|
||||||||||| ||| || ||||||||||||||||||||||||| ||||| ||||||| |||| ||||| || |||||||||||||||||||| |||| |
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| T |
33751940 |
acagatcaagataaactcttaaagaaaccagacaagattgttcagtgtccgcgatgcaacagttgggacaccaagttttgttatttcaacaactataatg |
33752039 |
T |
|
| Q |
116 |
tcaatcaacctcggcatttttgtcggagttgtcacagatattggaccaacggtggaacaatgagaaacgttgctgttggtgcagggagacggaagaacaa |
215 |
Q |
| |
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||||||||||||| ||||| || || || || || |||||||| ||||||||||||||||| ||| | | ||||| ||||| |||||||| || |
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| T |
33752040 |
tcaatcaacctcgacatttctgcaagaactgccaaaggtattggactgctggtggaacaatgagaaatgttccgataggtgctgggaggcggaagaataa |
33752139 |
T |
|
| Q |
216 |
acacatagcttctcaata |
233 |
Q |
| |
|
||| |||| |||||||| |
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|
| T |
33752140 |
gcacctagcctctcaata |
33752157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 82 - 194
Target Start/End: Original strand, 31771804 - 31771916
Alignment:
| Q |
82 |
gacacaaaattttgttatttcaacaactacaatgtcaatcaacctcggcatttttgtcggagttgtcacagatattggaccaacggtggaacaatgagaa |
181 |
Q |
| |
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||||| ||||||||||| |||||||| ||||||||||| || ||||| ||||||||| || ||||| ||||||||||| || ||||||||||||| |
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| T |
31771804 |
gacaccaaattttgttacttcaacaattacaatgtcaaccagcctcgtcatttttgtaagaaatgtcaaagatattggactgcaggaggaacaatgagaa |
31771903 |
T |
|
| Q |
182 |
acgttgctgttgg |
194 |
Q |
| |
|
| ||| ||||||| |
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|
| T |
31771904 |
atgttcctgttgg |
31771916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 128
Target Start/End: Original strand, 18198135 - 18198227
Alignment:
| Q |
36 |
aaagaaaccagacaagattgttcaatgtccaagatgcaaaagtttcgacacaaaattttgttatttcaacaactacaatgtcaatcaacctcg |
128 |
Q |
| |
|
||||||||||||| | |||||| |||||||||||||||||| |||||||||||||| || | |||||||||||| ||||| || ||||| |
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| T |
18198135 |
aaagaaaccagaccaagttgttccatgtccaagatgcaaaagcacggacacaaaattttgctactacaacaactacaacgtcaaacagcctcg |
18198227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 119
Target Start/End: Original strand, 18230777 - 18230844
Alignment:
| Q |
52 |
attgttcaatgtccaagatgcaaaagtttcgacacaaaattttgttatttcaacaactacaatgtcaa |
119 |
Q |
| |
|
||||||| ||||||||||||||||| | ||||||||||||||||| | ||||||||||| ||||| |
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|
| T |
18230777 |
attgttccctgtccaagatgcaaaagcatggacacaaaattttgttactataacaactacaacgtcaa |
18230844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 149
Target Start/End: Complemental strand, 4822328 - 4822239
Alignment:
| Q |
60 |
atgtccaagatgcaaaagtttcgacacaaaattttgttatttcaacaactacaatgtcaatcaacctcggcatttttgtcggagttgtca |
149 |
Q |
| |
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||||||||||||||| ||| | || || ||||||||||||||||| || ||||| || |||||||| | ||||||||| ||||||||| |
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| T |
4822328 |
atgtccaagatgcaagagtatggaaactaaattttgttatttcaataattacaacgttaatcaaccaagacatttttgtaagagttgtca |
4822239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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