View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20445_low_4 (Length: 343)
Name: NF20445_low_4
Description: NF20445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20445_low_4 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 325; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 19 - 343
Target Start/End: Original strand, 23365916 - 23366240
Alignment:
| Q |
19 |
cctactgcactcatgattttgcctcatcaatgaataaagatataaagaattgttactgtgggtgttcaatttcctttctagtttttcctgaacaattcga |
118 |
Q |
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| T |
23365916 |
cctactgcactcatgattttgcctcatcaatgaataaagatataaagaattgttactgtgggtgttcaatttcctttctagtttttcctgaacaattcga |
23366015 |
T |
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| Q |
119 |
tcaaggatttgttaacgatgttgctacttttgtaataaccgatgatctgattatcatgccaaattctattgactacgcaagttttgggcttctccaggaa |
218 |
Q |
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| T |
23366016 |
tcaaggatttgttaacgatgttgctacttttgtaataaccgatgatctgattatcatgccaaattctattgactacgcaagttttgggcttctccaggaa |
23366115 |
T |
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| Q |
219 |
tttggaatagaaaacacaagttcggtgaaggaaatgattcttaaagtcactatagaaaaggttttgcattttaatttctattccctaaatgattgtttct |
318 |
Q |
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| T |
23366116 |
tttggaatagaaaacacaagttcggtgaaggaaatgattcttaaagtcactatagaaaaggttttgcattttaatttctattccctaaatgattgtttct |
23366215 |
T |
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| Q |
319 |
gtttgtattttctatctcttgattg |
343 |
Q |
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| T |
23366216 |
gtttgtattttctatctcttgattg |
23366240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 120 - 289
Target Start/End: Complemental strand, 22633665 - 22633496
Alignment:
| Q |
120 |
caaggatttgttaacgatgttgctacttttgtaataaccgatgatctgattatcatgccaaattctattgactacgcaagttttgggcttctccaggaat |
219 |
Q |
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| T |
22633665 |
caaggatttgttaatgatgtagctacttttgtcataactgatgatctcactatcaagccaaactgtattgactatacaagctttagtctgttcgaggaat |
22633566 |
T |
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| Q |
220 |
ttggaatagaaaacacaagttcggtgaaggaaatgattcttaaagtcactatagaaaaggttttgcattt |
289 |
Q |
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| T |
22633565 |
ttggcataaaaaaccctagttcggtaaaagaagtggttctgaatttcaccaaagaaaaggttttgtattt |
22633496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 289
Target Start/End: Original strand, 22625505 - 22625674
Alignment:
| Q |
120 |
caaggatttgttaacgatgttgctacttttgtaataaccgatgatctgattatcatgccaaattctattgactacgcaagttttgggcttctccaggaat |
219 |
Q |
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| T |
22625505 |
caaggatttgttaatggtgtagctacatttgtcataactgatgatctcactatcaagccaaactgtattgactatacaagctttagcctgttcaaggaat |
22625604 |
T |
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| Q |
220 |
ttggaatagaaaacacaagttcggtgaaggaaatgattcttaaagtcactatagaaaaggttttgcattt |
289 |
Q |
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| T |
22625605 |
ttggcgtaaaaaaccctagttcggtaaaagaagtggttctgaatgtcaccaaagaaaaggttttgtattt |
22625674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 256
Target Start/End: Complemental strand, 23335746 - 23335710
Alignment:
| Q |
220 |
ttggaatagaaaacacaagttcggtgaaggaaatgat |
256 |
Q |
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| T |
23335746 |
ttggaataaaaagcacaagttcggtgaaggaaatgat |
23335710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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