View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20445_low_5 (Length: 331)
Name: NF20445_low_5
Description: NF20445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20445_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 10 - 183
Target Start/End: Complemental strand, 6892315 - 6892143
Alignment:
| Q |
10 |
attattcttactggatatgtcaacaattttgtctagttcatgacataattttttactctgaaaggagacatcagttacattaatttatctcaccttaaaa |
109 |
Q |
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| T |
6892315 |
attattcttcccggatatgtcaacaattttgtctagttcatgacataattttttactccgaaaggagacatcagttacattaatttatctcatcttagaa |
6892216 |
T |
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| Q |
110 |
gcttgattcccataacatacaagaggaattgggttgtagtttctatcattgtgatgaaccaaaatcttaagtcg |
183 |
Q |
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| T |
6892215 |
gcttcattcccataacatacaagaggaatt-ggttgtagtttctatcattgtgatgaaccaaaatcttaagtcg |
6892143 |
T |
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Target: chr8; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 192 - 331
Target Start/End: Complemental strand, 6891767 - 6891628
Alignment:
| Q |
192 |
attataactttcaatcatcaaccatttttccaacaatcattgttttagataatgaaaatagtaaaaagaaattggtactcaaacaaagtctcattgagat |
291 |
Q |
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| T |
6891767 |
attataactttcaatcatcaaccatttttccaacaatcattgttttagataataaaaatagtaaaaagaaattggtactcaaacaaagtctcattgagat |
6891668 |
T |
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| Q |
292 |
caatatttttattacggaggaatgctaatgacactctttt |
331 |
Q |
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| T |
6891667 |
caatatttttattacagaggaatgttaaggacactctttt |
6891628 |
T |
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