View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20445_low_7 (Length: 317)
Name: NF20445_low_7
Description: NF20445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20445_low_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 14550166 - 14549853
Alignment:
| Q |
1 |
tagtttgttacttagagaataatacaatgcctaagaaatattattatggttctgctgaatgcttgatgataattagaaggataaatttttaaatgaaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14550166 |
tagtttgttacttagagaataatacaatgcctaagaaatattattatggttctgctgaatgcttgatgataattagaaggataaatttttaaatgaaaat |
14550067 |
T |
|
| Q |
101 |
atcttgcaataccaatact----cattgctgcaaattactttcaactatcaaaccattaacattttaatggcattgtgataccgaggagagaatttgcac |
196 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
14550066 |
atcttgcaataccaatactttctcattgctgcaaattactttcaactatcaaaccattaacattttaatggcattgtgatacctaggagagaatttgcac |
14549967 |
T |
|
| Q |
197 |
attcagataaattgtcgaggctaattgcgactgcacatagaataaagtcgaattttcatgcaataagataacctaaaacaggcaaagattgtgtacactg |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14549966 |
attcagataaattgtcgaggctaattgcgactgcacatagaataaagtcgaattttcatgcaataagataacctaaaacaggcaaagattgtgtacactg |
14549867 |
T |
|
| Q |
297 |
aataatagaataat |
310 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
14549866 |
aataatagaataat |
14549853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 37692094 - 37691780
Alignment:
| Q |
1 |
tagtttgttacttagagaataatacaatgcctaagaaatattattatggttctgctgaatgcttgatgataattagaaggataaatttttaaatgaaaa- |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||| ||||||||||||||||||| |
|
|
| T |
37692094 |
tagtttgttacttagagaataatacaatgcctaagaaatattattatggttctgctgagtgct-gatcataattagaaatataaatttttaaatgaaaaa |
37691996 |
T |
|
| Q |
100 |
-tatcttgcaataccaata----ctcattgctgcaaattactttcaactatcaaaccattaacattttaatggcattgtgataccgaggagagaatttgc |
194 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
37691995 |
atatcttgcactaccaatattttctcattgctgcaaattactttcaactatcaaaccattaacattttaatggcattgtgataccaaggagagaatttgc |
37691896 |
T |
|
| Q |
195 |
acattcagataaattgtcgaggctaattgcgactgcacatagaataaagtcgaattttcatgcaataagataacctaaaacaggcaaagattgtgtacac |
294 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||| ||| |
|
|
| T |
37691895 |
acattcagatgaattgtcaaggctaattgcgactgcacatagaataaagtcgaattttcatgcaataatataacctaaaacaggtgacgattgtgtccac |
37691796 |
T |
|
| Q |
295 |
tgaataatagaataat |
310 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
37691795 |
agaataatagaataat |
37691780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 37589819 - 37589502
Alignment:
| Q |
1 |
tagtttgttacttagagaataatacaatgcctaagaaatattattatggttctgctgaatgcttgatgataattagaaggataaatttttaaatgaaaa- |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
37589819 |
tagtttgttacttagagaataatacaatgcctaagaaatattattatggttctgctgagtgct-gatgataattagaaatataaatttttaaatgaaaaa |
37589721 |
T |
|
| Q |
100 |
-tatcttgcaataccaata----ctcattgctgcaaattactttcaactatcaaaccatta---acattttaatggcattgtgataccgaggagagaatt |
191 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |
|
|
| T |
37589720 |
atatcttgcactaccaatagtttctcattgctgcaaattactttcaactatcaaaccattattaacattttaatggcattgtgataccaaggagagaatt |
37589621 |
T |
|
| Q |
192 |
tgcacattcagataaattgtcgaggctaattgcgactgcacatagaataaagtcgaattttcatgcaataagataacctaaaacaggcaaagattgtgta |
291 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||| |
|
|
| T |
37589620 |
tgcacattcagatgaattgtcaaggctaattgcgactgcacatagaataaagtcgaattttcatgcaataatataacctaaaacaggtgaagatcgtgtc |
37589521 |
T |
|
| Q |
292 |
cactgaataatagaataat |
310 |
Q |
| |
|
||| ||||||||||||||| |
|
|
| T |
37589520 |
cacagaataatagaataat |
37589502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 37527642 - 37527350
Alignment:
| Q |
1 |
tagtttgttacttagagaataatacaatgcctaagaaatattattatggttctgctgaatgcttgatgataattagaaggataaatttttaaatgaaaa- |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
37527642 |
tagtttgttacttagagaataatacaatgcctaagaaatattattatggttctgctgagtgct-gatgataattagaaatataaatttttaaatgaaaaa |
37527544 |
T |
|
| Q |
100 |
-tatcttgcaataccaatact----cattgctgcaaattactttcaactatcaaaccattaacattttaatggcattgtgataccgaggagagaatttgc |
194 |
Q |
| |
|
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
37527543 |
atatcttgcactaccaatactttctcattgctgcaaattactttcaactatcaaaccattaacattttaatggcattgtgataccaaggagagaatttgc |
37527444 |
T |
|
| Q |
195 |
acattcagataaattgtcgaggctaattgcgactgcacatagaataaagtcgaattttcatgcaataagataacctaaaacaggcaaagattgt |
288 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
37527443 |
acattcagatgaattgtcaaggctaattgcgactgcacatagaataaagttgaattttcatgcaataatataacctaaaacaggtgaagattgt |
37527350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 169
Target Start/End: Complemental strand, 37796074 - 37795997
Alignment:
| Q |
96 |
aaaatatcttgcaataccaata----ctcattgctgcaaattactttcaactatcaaaccattaacattttaatggca |
169 |
Q |
| |
|
||||||||||||| ||||||| ||||||| |||||||||||||||||||| |||||| | ||||||||||||| |
|
|
| T |
37796074 |
aaaatatcttgcacaaccaataatttctcattggtgcaaattactttcaactattaaaccaacatcattttaatggca |
37795997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 170
Target Start/End: Complemental strand, 37620233 - 37620181
Alignment:
| Q |
118 |
ctcattgctgcaaattactttcaactatcaaaccattaacattttaatggcat |
170 |
Q |
| |
|
||||||| | |||||||||||||||||| |||||| | |||||||||||||| |
|
|
| T |
37620233 |
ctcattggtccaaattactttcaactattaaaccaacatcattttaatggcat |
37620181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University