View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20445_low_9 (Length: 271)
Name: NF20445_low_9
Description: NF20445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20445_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 12 - 256
Target Start/End: Original strand, 14278378 - 14278622
Alignment:
| Q |
12 |
gcaaaggaaaatcactcccgtatagtccaagcgaaaaccaagccattcatttgcaccaatgttatggaaatccattcttatactagcattcaccctgtca |
111 |
Q |
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| T |
14278378 |
gcaaaggaaaatcactcccgtatagtccaagcgaaaaccaagccattcatttgcaccaatgttatgaaaatccattcttatacttgcattcaccctgtca |
14278477 |
T |
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| Q |
112 |
acatttccctgagaaaatgcattctgctttcttaagctacggattgtcataacaccagaaatggtctctgaaaagtgatgaatcactggagcttttgtga |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
14278478 |
acatttccctgagaaaatgcattctgctttcttaagctacgaattgtcataacaccagaaatggtctctgaaaagtgatgaatcacaggagcttttgtga |
14278577 |
T |
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| Q |
212 |
ttgaatcaagtcgagtcaattccctagtagttgcaagataatatt |
256 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14278578 |
ttgaatcaagtcgagtcaattccctagtagttgcaagataatatt |
14278622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 12 - 256
Target Start/End: Original strand, 14300115 - 14300359
Alignment:
| Q |
12 |
gcaaaggaaaatcactcccgtatagtccaagcgaaaaccaagccattcatttgcaccaatgttatggaaatccattcttatactagcattcaccctgtca |
111 |
Q |
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|||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||| ||||||||||||||| |
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| T |
14300115 |
gcaaaggaaagtcactcccatatagtccaagcgaaaaccaagccattcatttgcaccattgttatgaaaatccattcttagacttgcattcaccctgtca |
14300214 |
T |
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| Q |
112 |
acatttccctgagaaaatgcattctgctttcttaagctacggattgtcataacaccagaaatggtctctgaaaagtgatgaatcactggagcttttgtga |
211 |
Q |
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| T |
14300215 |
acattttcttgagaaaatgcattctgctttcttgagctacggattgtcataacaccagaaatggtctctgaaaagtgatgaatcactggagcttttgtga |
14300314 |
T |
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| Q |
212 |
ttgaatcaagtcgagtcaattccctagtagttgcaagataatatt |
256 |
Q |
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| T |
14300315 |
ttgaatcaagtcgagtcaattccctagaagttgcaagataatatt |
14300359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 12 - 252
Target Start/End: Original strand, 14316589 - 14316829
Alignment:
| Q |
12 |
gcaaaggaaaatcactcccgtatagtccaagcgaaaaccaagccattcatttgcaccaatgttatggaaatccattcttatactagcattcaccctgtca |
111 |
Q |
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||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||| ||| ||||||||||||||| |
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| T |
14316589 |
gcaaaggaaaacaactcccatatagtccaaacgaaaaccaagccattcatttgcaccattgttatgaaaatccattcttagacttgcattcaccctgtca |
14316688 |
T |
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| Q |
112 |
acatttccctgagaaaatgcattctgctttcttaagctacggattgtcataacaccagaaatggtctctgaaaagtgatgaatcactggagcttttgtga |
211 |
Q |
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| |||| | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
14316689 |
atattttcttgagaaaatgcattctgctttcttaagcaacggattgtcataacaccagaaatggtctctgaaaagtgatgaatcaccggagcttttgtga |
14316788 |
T |
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| Q |
212 |
ttgaatcaagtcgagtcaattccctagtagttgcaagataa |
252 |
Q |
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| T |
14316789 |
ttgaatcaagtcgagtcaattccctagaagttgcaagataa |
14316829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 12 - 255
Target Start/End: Original strand, 25881693 - 25881936
Alignment:
| Q |
12 |
gcaaaggaaaatcactcccgtatagtccaagcgaaaaccaagccattcatttgcaccaatgttatggaaatccattcttatactagcattcaccctgtca |
111 |
Q |
| |
|
||||||||||| ||||| ||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||| ||||| |
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| T |
25881693 |
gcaaaggaaaacaactccattatagtctaaacgaaaaccaagccattcatttgcaccattgttatggaaatccattcttagacttgcattcaccttgtca |
25881792 |
T |
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| Q |
112 |
acatttccctgagaaaatgcattctgctttcttaagctacggattgtcataacaccagaaatggtctctgaaaagtgatgaatcactggagcttttgtga |
211 |
Q |
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| |||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25881793 |
atattttcctgacaaaatgtattctgctttcttaagctacggattgtcataacaccagaaatggtctctgaaaagtgatgaatcactggagcttttgtga |
25881892 |
T |
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| Q |
212 |
ttgaatcaagtcgagtcaattccctagtagttgcaagataatat |
255 |
Q |
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|||||||||| |||||||||||||||| |||||||||||||||| |
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| T |
25881893 |
ttgaatcaaggcgagtcaattccctagaagttgcaagataatat |
25881936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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