View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20446_high_12 (Length: 337)
Name: NF20446_high_12
Description: NF20446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20446_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 23 - 322
Target Start/End: Original strand, 7238053 - 7238352
Alignment:
| Q |
23 |
acctttgtgcttgtgaccgtcaagatctcttggcgtcttctttcctcctatttttggcgtctaacacccaagtacctgaaatgtaaacaaaacatcagca |
122 |
Q |
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| T |
7238053 |
acctttgtgcttgtgaccatcaagacctcttggcgtcttctttcctcccatttttggcgtctaacacccaagtacctgaaatgtaaacaaaacatcagca |
7238152 |
T |
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| Q |
123 |
gacaccatgcaaaacacgacaaatgactctaaaacaaacgaaaataagctttttagataatgtactttgtgtgttatcaattgcacgcctgtatattcat |
222 |
Q |
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| T |
7238153 |
gacaccatgcaaaacacgacaaatgactctaaaacaaacgaaaataagctttttagataatgtactttgtgtgttatcaattgcacgcctgtatattcat |
7238252 |
T |
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| Q |
223 |
atcttatactcattacttgcactcttatttaccacaattcgttcataaaggcacacatagagttacacaacctttaatagttgcactccatctattcatc |
322 |
Q |
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| T |
7238253 |
atcttatactcattacttgcactcttatttaccacaattcgttcataaaggcacacatagagttacacaacctttaatagttgcactccatctattcatc |
7238352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 202
Target Start/End: Complemental strand, 1826372 - 1826295
Alignment:
| Q |
126 |
accatgcaaaacacgacaaatgactctaaaacaaacgaaaat-aagctttttagataatgtactttgtgtgttatcaa |
202 |
Q |
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| T |
1826372 |
accatgcaagacacaataattgactctaaaacaaatggatatcaagctatttagacaatgtattttgtgtgttatcaa |
1826295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 91 - 165
Target Start/End: Complemental strand, 29565889 - 29565815
Alignment:
| Q |
91 |
caagtacctgaaatgtaaacaaaacatcagcagacaccatgcaaaacacgacaaatgactctaaaacaaacgaaa |
165 |
Q |
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| T |
29565889 |
caagtacctgaaatgtaaacaaaacaccaacatacaccatgtaaaacgcgacaaatgactctaaaacaaatgaaa |
29565815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 159
Target Start/End: Original strand, 33994999 - 33995032
Alignment:
| Q |
126 |
accatgcaaaacacgacaaatgactctaaaacaa |
159 |
Q |
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| T |
33994999 |
accatgcaaaacacgacaaatggctctaaaacaa |
33995032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 160
Target Start/End: Original strand, 17334526 - 17334567
Alignment:
| Q |
119 |
agcagacaccatgcaaaacacgacaaatgactctaaaacaaa |
160 |
Q |
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|||||| |||||||||||||||||||||||| | |||||||| |
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| T |
17334526 |
agcagataccatgcaaaacacgacaaatgaccccaaaacaaa |
17334567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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