View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20446_high_15 (Length: 294)
Name: NF20446_high_15
Description: NF20446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20446_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 3084073 - 3083796
Alignment:
| Q |
1 |
ccatgcattctcaaaataattattacatggaccaagtcaccaaaataaataggaaaagagtgaggaaattaacattttagtactcatatttagtcattca |
100 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3084073 |
ccatgcattcacaaaataattattacatggaccaagtcaccaaaataaatgggaaaagagtgaggaaattaacattttagtactcatatttagtcattcg |
3083974 |
T |
|
| Q |
101 |
aattcgagaaattgcaatttagtctcttaaaatgaaccgttagtcaatttaatcattgttaaaatttagcaaatttaagagatatcttggtgaaggaact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3083973 |
aattcgagaaattgcaatttagtctcttaaaatgaaccgttagtcaatttaatcattgttaaaatttagcaaatttaagagatatcttggtgaaggaact |
3083874 |
T |
|
| Q |
201 |
aaattattgactttctttattttaagagactaacttactattttgcaaatttgaaaaactaaatttctggactcttat |
278 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3083873 |
aaattattgactttctttattttaagagactaacttactattttgcaaatttgaaaaactaaatttctggactcttat |
3083796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 265
Target Start/End: Complemental strand, 41590839 - 41590799
Alignment:
| Q |
225 |
agagactaacttactattttgcaaatttgaaaaactaaatt |
265 |
Q |
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||||||||| |||||||||||||||||||||||||| |||| |
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| T |
41590839 |
agagactaaattactattttgcaaatttgaaaaactgaatt |
41590799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 265
Target Start/End: Complemental strand, 41513868 - 41513824
Alignment:
| Q |
221 |
tttaagagactaacttactattttgcaaatttgaaaaactaaatt |
265 |
Q |
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| T |
41513868 |
tttaagggactaacttgctattttgcaaatttgaaggactaaatt |
41513824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 265
Target Start/End: Original strand, 40213407 - 40213451
Alignment:
| Q |
221 |
tttaagagactaacttactattttgcaaatttgaaaaactaaatt |
265 |
Q |
| |
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||||||||||||| |||| ||||||||||||| || ||||||||| |
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| T |
40213407 |
tttaagagactaaattacaattttgcaaatttaaataactaaatt |
40213451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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