View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20446_high_21 (Length: 258)

Name: NF20446_high_21
Description: NF20446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20446_high_21
NF20446_high_21
[»] chr3 (8 HSPs)
chr3 (1-158)||(54394183-54394341)
chr3 (174-245)||(54393181-54393252)
chr3 (126-178)||(44441597-44441649)
chr3 (126-177)||(10480323-10480374)
chr3 (132-176)||(1902287-1902331)
chr3 (132-176)||(1911733-1911777)
chr3 (126-178)||(21984433-21984485)
chr3 (150-178)||(54393416-54393444)
[»] chr1 (4 HSPs)
chr1 (126-178)||(46396670-46396722)
chr1 (126-174)||(1282172-1282220)
chr1 (126-174)||(1283203-1283251)
chr1 (3-37)||(362671-362705)
[»] scaffold0245 (1 HSPs)
scaffold0245 (126-174)||(7852-7900)
[»] scaffold0229 (1 HSPs)
scaffold0229 (126-174)||(8180-8228)
[»] chr8 (2 HSPs)
chr8 (126-178)||(1336106-1336158)
chr8 (126-178)||(3310487-3310539)
[»] chr5 (4 HSPs)
chr5 (126-178)||(22399508-22399560)
chr5 (129-178)||(15726821-15726869)
chr5 (3-35)||(26032247-26032279)
chr5 (126-178)||(29368437-29368489)
[»] chr4 (2 HSPs)
chr4 (141-178)||(26333291-26333328)
chr4 (141-178)||(47552154-47552191)
[»] chr2 (4 HSPs)
chr2 (126-178)||(42531056-42531108)
chr2 (128-178)||(42071356-42071405)
chr2 (129-169)||(6885111-6885151)
chr2 (3-35)||(7888418-7888450)
[»] chr7 (2 HSPs)
chr7 (2-32)||(39187748-39187778)
chr7 (3-39)||(33236915-33236951)


Alignment Details
Target: chr3 (Bit Score: 115; Significance: 2e-58; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 54394341 - 54394183
Alignment:
Q  1 tttatatttataggaacgaaaaacttatttaactcttatcattattatatcacgtatgttttctaagacgaaaaaggttgcaatccgattgaagagtaag 100  Q
    |||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54394341 tttatagttataagaacgaaaaacttatttaacccttatcattattatatcacgtatgttttctaagacgaaaaaggttgcaatccgattgaagagtaag 54394242  T
Q  101 -taaagatcccaaacctatccttcggagtgacggattcagaatttttgaatagtggggg 158  Q
     |||||||||||| ||| ||| || ||||||||||| ||| ||||||||||||||||||    
T  54394241 ttaaagatcccaagcctctccctctgagtgacggatccaggatttttgaatagtggggg 54394183  T

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Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 174 - 245
Target Start/End: Complemental strand, 54393252 - 54393181
Alignment:
Q  174 tttgtgataaatgatgataagtatcggtcaagtgataaattatttgtgataaatgtggtctatgtgattaat 245  Q
    |||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  54393252 tttgagatatatgatgataagtatcggtcaagagataaattatttgtgataaatgtggtctatgtgattaat 54393181  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 126 - 178
Target Start/End: Original strand, 44441597 - 44441649
Alignment:
Q  126 agtgacggattcagaatttttgaatagtgggggcactatatataaaaatttgt 178  Q
    |||||||||| ||| ||||||||||||||| ||||||||||||||||||||||    
T  44441597 agtgacggatccaggatttttgaatagtggaggcactatatataaaaatttgt 44441649  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 177
Target Start/End: Original strand, 10480323 - 10480374
Alignment:
Q  126 agtgacggattcagaatttttgaatagtgggggcactatatataaaaatttg 177  Q
    |||||||||||||  ||||||||||||||| ||||| |||||||||||||||    
T  10480323 agtgacggattcatgatttttgaatagtggaggcaccatatataaaaatttg 10480374  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 176
Target Start/End: Complemental strand, 1902331 - 1902287
Alignment:
Q  132 ggattcagaatttttgaatagtgggggcactatatataaaaattt 176  Q
    |||| ||| |||||||||||||||| |||| ||||||||||||||    
T  1902331 ggatccaggatttttgaatagtgggtgcaccatatataaaaattt 1902287  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 176
Target Start/End: Complemental strand, 1911777 - 1911733
Alignment:
Q  132 ggattcagaatttttgaatagtgggggcactatatataaaaattt 176  Q
    |||| ||| |||||||||||||||| |||| ||||||||||||||    
T  1911777 ggatccaggatttttgaatagtgggtgcaccatatataaaaattt 1911733  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 178
Target Start/End: Complemental strand, 21984485 - 21984433
Alignment:
Q  126 agtgacggattcagaatttttgaatagtgggggcactatatataaaaatttgt 178  Q
    ||||||||| |||| |||||||| || ||||||||  ||||||||||||||||    
T  21984485 agtgacggaatcaggatttttgattattgggggcatcatatataaaaatttgt 21984433  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 178
Target Start/End: Complemental strand, 54393444 - 54393416
Alignment:
Q  150 tagtgggggcactatatataaaaatttgt 178  Q
    |||||||||||||||||||||||||||||    
T  54393444 tagtgggggcactatatataaaaatttgt 54393416  T

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Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 126 - 178
Target Start/End: Complemental strand, 46396722 - 46396670
Alignment:
Q  126 agtgacggattcagaatttttgaatagtgggggcactatatataaaaatttgt 178  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  46396722 agtgacggatccaggatttttgaatagtgggggcactatatataaaaatttgt 46396670  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 126 - 174
Target Start/End: Original strand, 1282172 - 1282220
Alignment:
Q  126 agtgacggattcagaatttttgaatagtgggggcactatatataaaaat 174  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  1282172 agtgacggatccaggatttttgaatagtgggggcactatatataaaaat 1282220  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 126 - 174
Target Start/End: Original strand, 1283203 - 1283251
Alignment:
Q  126 agtgacggattcagaatttttgaatagtgggggcactatatataaaaat 174  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  1283203 agtgacggatccaggatttttgaatagtgggggcactatatataaaaat 1283251  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 37
Target Start/End: Complemental strand, 362705 - 362671
Alignment:
Q  3 tatatttataggaacgaaaaacttatttaactctt 37  Q
    |||||||||||| ||||||||||||||||||||||    
T  362705 tatatttatagggacgaaaaacttatttaactctt 362671  T

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Target: scaffold0245 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 126 - 174
Target Start/End: Original strand, 7852 - 7900
Alignment:
Q  126 agtgacggattcagaatttttgaatagtgggggcactatatataaaaat 174  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  7852 agtgacggatccaggatttttgaatagtgggggcactatatataaaaat 7900  T

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Target: scaffold0229 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 126 - 174
Target Start/End: Original strand, 8180 - 8228
Alignment:
Q  126 agtgacggattcagaatttttgaatagtgggggcactatatataaaaat 174  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  8180 agtgacggatccaggatttttgaatagtgggggcactatatataaaaat 8228  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 126 - 178
Target Start/End: Original strand, 1336106 - 1336158
Alignment:
Q  126 agtgacggattcagaatttttgaatagtgggggcactatatataaaaatttgt 178  Q
    |||||||||| ||| ||||||||||||||||||||||| ||||||||||||||    
T  1336106 agtgacggatccaggatttttgaatagtgggggcactacatataaaaatttgt 1336158  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 126 - 178
Target Start/End: Original strand, 3310487 - 3310539
Alignment:
Q  126 agtgacggattcagaatttttgaatagtgggggcactatatataaaaatttgt 178  Q
    |||||| ||| |||||||||||||| ||||||||||||||||| |||||||||    
T  3310487 agtgactgatccagaatttttgaatggtgggggcactatatatgaaaatttgt 3310539  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 126 - 178
Target Start/End: Complemental strand, 22399560 - 22399508
Alignment:
Q  126 agtgacggattcagaatttttgaatagtgggggcactatatataaaaatttgt 178  Q
    |||||||||| ||| |||||||||||||||| |||||||||||||||||||||    
T  22399560 agtgacggatccaggatttttgaatagtgggcgcactatatataaaaatttgt 22399508  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 129 - 178
Target Start/End: Original strand, 15726821 - 15726869
Alignment:
Q  129 gacggattcagaatttttgaatagtgggggcactatatataaaaatttgt 178  Q
    |||||||||||||||||| |||||| ||||||| ||||| ||||||||||    
T  15726821 gacggattcagaattttttaatagt-ggggcaccatataaaaaaatttgt 15726869  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 26032279 - 26032247
Alignment:
Q  3 tatatttataggaacgaaaaacttatttaactc 35  Q
    |||||||||||| ||||||||||||||||||||    
T  26032279 tatatttatagggacgaaaaacttatttaactc 26032247  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 178
Target Start/End: Original strand, 29368437 - 29368489
Alignment:
Q  126 agtgacggattcagaatttttgaatagtgggggcactatatataaaaatttgt 178  Q
    ||||||||| |||| |||||||| || ||||||||  ||||||||||||||||    
T  29368437 agtgacggaatcaggatttttgattattgggggcatcatatataaaaatttgt 29368489  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 178
Target Start/End: Complemental strand, 26333328 - 26333291
Alignment:
Q  141 atttttgaatagtgggggcactatatataaaaatttgt 178  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  26333328 atttttgaatagtcggggcactatatataaaaatttgt 26333291  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 178
Target Start/End: Complemental strand, 47552191 - 47552154
Alignment:
Q  141 atttttgaatagtgggggcactatatataaaaatttgt 178  Q
    |||||||||||||||| |||||||||||||||||||||    
T  47552191 atttttgaatagtgggagcactatatataaaaatttgt 47552154  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 178
Target Start/End: Complemental strand, 42531108 - 42531056
Alignment:
Q  126 agtgacggattcagaatttttgaatagtgggggcactatatataaaaatttgt 178  Q
    ||||||| |||||| ||||||||||||||||||||  |||||| |||||||||    
T  42531108 agtgacgaattcaggatttttgaatagtgggggcatcatatatgaaaatttgt 42531056  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 178
Target Start/End: Original strand, 42071356 - 42071405
Alignment:
Q  128 tgacggattcagaatttttgaatagtgggggcactatatataaaaatttgt 178  Q
    |||||||| || || ||||||||||||||| ||||||||||||||||||||    
T  42071356 tgacggatccataagttttgaatagtgggg-cactatatataaaaatttgt 42071405  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 169
Target Start/End: Complemental strand, 6885151 - 6885111
Alignment:
Q  129 gacggattcagaatttttgaatagtgggggcactatatata 169  Q
    ||||||||||||| ||||||||| ||||||||| |||||||    
T  6885151 gacggattcagaaattttgaataatgggggcacaatatata 6885111  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 7888450 - 7888418
Alignment:
Q  3 tatatttataggaacgaaaaacttatttaactc 35  Q
    ||||||||||||||| |||||||||||||||||    
T  7888450 tatatttataggaaccaaaaacttatttaactc 7888418  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 32
Target Start/End: Original strand, 39187748 - 39187778
Alignment:
Q  2 ttatatttataggaacgaaaaacttatttaa 32  Q
    |||||||||||||||||||||||||||||||    
T  39187748 ttatatttataggaacgaaaaacttatttaa 39187778  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 33236951 - 33236915
Alignment:
Q  3 tatatttataggaacgaaaaacttatttaactcttat 39  Q
    |||||||||||||| |||||||||||||||| |||||    
T  33236951 tatatttataggaaagaaaaacttatttaacccttat 33236915  T

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