View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20446_high_26 (Length: 242)
Name: NF20446_high_26
Description: NF20446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20446_high_26 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 17 - 222
Target Start/End: Complemental strand, 1717164 - 1716959
Alignment:
| Q |
17 |
acttttctatttgggtaggggaatggacagctgaatggagtatagaaggggcgcctatgcaagactaccaaagatatgtccaagcacaaatggatgtgta |
116 |
Q |
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| T |
1717164 |
acttttctatttgggtaggggaatggacagctgaatggagtatacaaggggcacctatgcaagactaccaaagatatgtccaagcacaaatggatgtgta |
1717065 |
T |
|
| Q |
117 |
ttctcatgcaacatttggatgggcctattgggcctacaaatgtcaatataaccattggagtctcaagtggttgatcgagaatggttacataaagctctag |
216 |
Q |
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| T |
1717064 |
ttctcatgcaacatttggatgggcctattgggcctacaaatgtcaatataaccattggagtctcaagtggttgatcgagaatggttacataaagctctag |
1716965 |
T |
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| Q |
217 |
atgcaa |
222 |
Q |
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|||||| |
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| T |
1716964 |
atgcaa |
1716959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 17 - 229
Target Start/End: Complemental strand, 1738570 - 1738358
Alignment:
| Q |
17 |
acttttctatttgggtaggggaatggacagctgaatggagtatagaaggggcgcctatgcaagactaccaaagatatgtccaagcacaaatggatgtgta |
116 |
Q |
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| T |
1738570 |
acttttctattttggtaggggaatggacggctgaatggagcatacaaggtgcgtctatgcaagactaccaaagatatgtccaaacacaaatggatgtata |
1738471 |
T |
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| Q |
117 |
ttctcatgcaacatttggatgggcctattgggcctacaaatgtcaatataaccattggagtctcaagtggttgatcgagaatggttacataaagctctag |
216 |
Q |
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| T |
1738470 |
ttctcgtgcaacatttggatgggctttttggtcctataaatgtcagaataacaaatggagtctcaagtggttgatcgaaaatggttacataaagctctag |
1738371 |
T |
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| Q |
217 |
atgcaaggggttc |
229 |
Q |
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||| ||||||||| |
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| T |
1738370 |
atgtaaggggttc |
1738358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 71 - 228
Target Start/End: Complemental strand, 1753662 - 1753505
Alignment:
| Q |
71 |
ctatgcaagactaccaaagatatgtccaagcacaaatggatgtgtattctcatgcaacatttggatgggcctattgggcctacaaatgtcaatataacca |
170 |
Q |
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|||||||||||||||||||||||| |||||||||| | ||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||| |
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| T |
1753662 |
ctatgcaagactaccaaagatatggccaagcacaactagatgtgtattctcgtgcaacatttggatgggcttattgggcatacaaatgtcaatataacca |
1753563 |
T |
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| Q |
171 |
ttggagtctcaagtggttgatcgagaatggttacataaagctctagatgcaaggggtt |
228 |
Q |
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| T |
1753562 |
ttggagtctcaagtggatgatcgagaatggttacataaagctctagatgtaaggggtt |
1753505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 96 - 212
Target Start/End: Complemental strand, 1748381 - 1748265
Alignment:
| Q |
96 |
ccaagcacaaatggatgtgtattctcatgcaacatttggatgggcctattgggcctacaaatgtcaatataaccattggagtctcaagtggttgatcgag |
195 |
Q |
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|||||| ||| ||||||||||||||| ||||||||||||||||| |||||| ||||||||||||| | ||| | |||||| || |||||| |||||||| |
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| T |
1748381 |
ccaagcccaattggatgtgtattctcgggcaacatttggatgggcttattggtcctacaaatgtcagtttaatcgttggagccttaagtggatgatcgag |
1748282 |
T |
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| Q |
196 |
aatggttacataaagct |
212 |
Q |
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| T |
1748281 |
aatggttacataaagct |
1748265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 189
Target Start/End: Complemental strand, 38087047 - 38086985
Alignment:
| Q |
127 |
acatttggatgggcctattgggcctacaaatgtcaatataaccattggagtctcaagtggttg |
189 |
Q |
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|||||||||||||| |||||||| ||||||||| | | |||| | |||||||| ||||||||| |
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| T |
38087047 |
acatttggatgggcatattgggcttacaaatgtgactctaacaactggagtcttaagtggttg |
38086985 |
T |
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