View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20446_high_29 (Length: 221)
Name: NF20446_high_29
Description: NF20446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20446_high_29 |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 12191566 - 12191775
Alignment:
| Q |
1 |
taacattgcctgaataaaagtata----actaaaatagcatctcaaacagctcatgaaatcttctttcttcaaatgaaactttacacacaaatttttcct |
96 |
Q |
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| T |
12191566 |
taacattgcctgaataaaagtatatataactaaaatagcatctcaaacagctcatgaaatcttctttcttcaaatgaaactttaaacacaaatttttcct |
12191665 |
T |
|
| Q |
97 |
catcaatcaactcaaagtaacaaatgtctttaatctccaatttgcattctttcttaatctttctccaacttgcatacaatttactgcctctagcataata |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12191666 |
catcaatcaactcaaagtaacaaatgtctttaatctccaatttgcattctttcttaatctttctccaacttgcatacaatttactgcctctagcataata |
12191765 |
T |
|
| Q |
197 |
catcactttc |
206 |
Q |
| |
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|||||||||| |
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| T |
12191766 |
catcactttc |
12191775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 67 - 185
Target Start/End: Original strand, 12902865 - 12902983
Alignment:
| Q |
67 |
caaatgaaactttacacacaaatttttcctcatcaatcaactcaaagtaacaaatgtctttaatctccaatttgcattctttcttaatctttctccaact |
166 |
Q |
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|||||||||||||| ||||| |||||| ||||||||| |||||||| ||||||||||| ||| |||||||||||||| || || ||||||||||| |
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| T |
12902865 |
caaatgaaactttaaacacacattttttctcatcaattaactcaaacaaacaaatgtctcccttcttcaatttgcattcttcctgaaactttctccaacc |
12902964 |
T |
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| Q |
167 |
tgcatacaatttactgcct |
185 |
Q |
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||||| ||| |||||||| |
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| T |
12902965 |
tgcatgaaatctactgcct |
12902983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 142
Target Start/End: Complemental strand, 12879830 - 12879778
Alignment:
| Q |
90 |
ttttcctcatcaatcaactcaaagtaacaaatgtctttaatctccaatttgca |
142 |
Q |
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| T |
12879830 |
ttttcctcatcaatcaactaaaagcatcaagtgtctccaatctccaatttgca |
12879778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 89 - 153
Target Start/End: Original strand, 7338613 - 7338677
Alignment:
| Q |
89 |
tttttcctcatcaatcaactcaaagtaacaaatgtctttaatctccaatttgcattctttcttaa |
153 |
Q |
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||||| |||||||||||||||||||||| || ||||| ||||||||||||||| |||||||||| |
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| T |
7338613 |
ttttttctcatcaatcaactcaaagtaataagtgtctccaatctccaatttgcaatctttcttaa |
7338677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 153
Target Start/End: Complemental strand, 24212632 - 24212575
Alignment:
| Q |
96 |
tcatcaatcaactcaaagtaacaaatgtctttaatctccaatttgcattctttcttaa |
153 |
Q |
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|||||||||||||||||| || || |||||| ||||||||| ||||| |||||||||| |
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| T |
24212632 |
tcatcaatcaactcaaagcaataagtgtcttcaatctccaaattgcaatctttcttaa |
24212575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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