View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20446_high_31 (Length: 210)
Name: NF20446_high_31
Description: NF20446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20446_high_31 |
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Alignment Details
Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 18 - 130
Target Start/End: Complemental strand, 21200057 - 21199945
Alignment:
| Q |
18 |
aatatcagagatttctaggttttgaagtagttgtataactgttccaaaaacattaggcattacataaagatcatctgaaataataaatgcagcagtttcc |
117 |
Q |
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| T |
21200057 |
aatatcagagatttccagcttgtgaagtagttgtataactgtcccaaaaacattaggcatcacataaagatcgtctgaaataataaatgcagcagtttcc |
21199958 |
T |
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| Q |
118 |
ttaacaaacccgc |
130 |
Q |
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| T |
21199957 |
ttaacaaaaccgc |
21199945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 18 - 130
Target Start/End: Complemental strand, 21194804 - 21194692
Alignment:
| Q |
18 |
aatatcagagatttctaggttttgaagtagttgtataactgttccaaaaacattaggcattacataaagatcatctgaaataataaatgcagcagtttcc |
117 |
Q |
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| T |
21194804 |
aatatcagatatttctagcttttgaagtagttgtataactgttccaaaatcattaggcatcacacaaagatcgtcggaaataataaatgcagcagtttcc |
21194705 |
T |
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| Q |
118 |
ttaacaaacccgc |
130 |
Q |
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| T |
21194704 |
ttaacaagcccgc |
21194692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 27 - 125
Target Start/End: Complemental strand, 24284559 - 24284461
Alignment:
| Q |
27 |
gatttctaggttttgaagtagttgtataactgttccaaaaacattaggcattacataaagatcatctgaaataataaatgcagcagtttccttaacaaa |
125 |
Q |
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| T |
24284559 |
gatttcaagcttttgaagtagtggtataactgttccaaaaacattaggcatcacagtaagatcatcagaaattataaatgtggcggtttccttagcaaa |
24284461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 125
Target Start/End: Original strand, 24232214 - 24232279
Alignment:
| Q |
60 |
tccaaaaacattaggcattacataaagatcatctgaaataataaatgcagcagtttccttaacaaa |
125 |
Q |
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| T |
24232214 |
tccaaaaacattaggcataacacaaagatcatcagaaatgataaaagtagcattttccttcacaaa |
24232279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 159 - 196
Target Start/End: Complemental strand, 21194546 - 21194509
Alignment:
| Q |
159 |
tttcatgggttctgtgtcgtcaatattcagcttcatct |
196 |
Q |
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| T |
21194546 |
tttcatgggttctgtgtcgtcgatattcagtttcatct |
21194509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 125
Target Start/End: Original strand, 24153975 - 24154031
Alignment:
| Q |
69 |
attaggcattacataaagatcatctgaaataataaatgcagcagtttccttaacaaa |
125 |
Q |
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| T |
24153975 |
attaggcatcacataaagatcgtcccgaataataaaagaagcagtttccttaacaaa |
24154031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 125
Target Start/End: Complemental strand, 3151577 - 3151496
Alignment:
| Q |
44 |
gtagttgtataactgttccaaaaacattaggcattacataaagatcatctgaaataataaatgcagcagtttccttaacaaa |
125 |
Q |
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| T |
3151577 |
gtagatgtacaactgttgccaaaacattaggcatcacaaaaagatcgtcggaaatgataaaagtagcagtttcttcaacaaa |
3151496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 10989258 - 10989190
Alignment:
| Q |
39 |
ttgaagtagttgtataactgttccaaaaacattaggcattacataaagatcatctgaaataataaatgc |
107 |
Q |
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| T |
10989258 |
ttgaagtagatgtataattgttccgaaaacattaggcataatagaaagctcatcagaaatgatcaatgc |
10989190 |
T |
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