View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20446_high_9 (Length: 354)
Name: NF20446_high_9
Description: NF20446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20446_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 8 - 244
Target Start/End: Complemental strand, 7239227 - 7238991
Alignment:
| Q |
8 |
gagaagcaaaggtagatatggctattagtgtggtagttagagtgtactcattaaaagatgtgtggatcaatgtgtgcacttgtaagggaatcattatata |
107 |
Q |
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| T |
7239227 |
gagaaacaatggtagatatggctattagcgtggtagttagggtgtactcattaaaagatgtgtggatcaatgtgtgcacttgtaagggaatcattatata |
7239128 |
T |
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| Q |
108 |
taaatatggaagcaaggagtataggagataaatagataggtgtacaagcatttaaggttttgtggctctatgcgtgcatttgtgagataaccatggtaga |
207 |
Q |
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| T |
7239127 |
taaatgtgcaagcaaggagtataggagataaattgataggtgtacaagcatttaaggttttgtggctctatgtgtgcatttgtgagagaaccatggtaga |
7239028 |
T |
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| Q |
208 |
tagttgtgtaagtgagaagtataagagataaaaagaa |
244 |
Q |
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| T |
7239027 |
tagttgtgtgagtgagaagtataagagataaaaagaa |
7238991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 236 - 354
Target Start/End: Complemental strand, 7238450 - 7238332
Alignment:
| Q |
236 |
taaaaagaaaggtgtgcaatcattaaaagttgggtaattcattgtatgcctttgtgaacgtagcattttagacatgcgtgcaagtaaggggtatatgaga |
335 |
Q |
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| T |
7238450 |
taaaaagaaaggtgtgcgatcattaaaagttgggtaattcattgtattcctttgtgaacgtagcattttagacatgcgtgcaagtaaggggtatatggga |
7238351 |
T |
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| Q |
336 |
tgaatagatggagtgcaac |
354 |
Q |
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| T |
7238350 |
tgaatagatggagtgcaac |
7238332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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