View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20446_low_10 (Length: 357)
Name: NF20446_low_10
Description: NF20446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20446_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 64 - 127
Target Start/End: Original strand, 49044879 - 49044944
Alignment:
| Q |
64 |
acactgaaacagtgcagccaatgaggaaat--aggatcctgccttggagaaaaaggaaagaataaa |
127 |
Q |
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| T |
49044879 |
acactgaaacagtgcagccaatgaggaaattcaggaacctgtcttggagaaaaaggaaggaataaa |
49044944 |
T |
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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 64 - 128
Target Start/End: Original strand, 49049246 - 49049312
Alignment:
| Q |
64 |
acactgaaacagtgcagccaatgaggaaa--taggatcctgccttggagaaaaaggaaagaataaat |
128 |
Q |
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| T |
49049246 |
acactgaagcggtgcagccaatgaggaaatttaggaacctgtcttgcagaaaaaggaaggaataaat |
49049312 |
T |
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