View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20446_low_13 (Length: 339)
Name: NF20446_low_13
Description: NF20446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20446_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 18 - 331
Target Start/End: Original strand, 6059747 - 6060060
Alignment:
| Q |
18 |
gttacaagaatggaacagaatatatacagcagaaagacagaaaacgctgtaaatcatctgtctcacttcataacataacaagaaaagtcctgcatggaaa |
117 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6059747 |
gttacaagaatggaacagaatatatgcagcagaaagacagaaaacgctgtaaatcatctgtctcacttcataacataacaagaaaagtcctgcatggaaa |
6059846 |
T |
|
| Q |
118 |
ctcctccaaagccgcaacacaccagcacattcgatccagaccattgaatcataccagctgcaaggaacaccaggnnnnnnncctatcaaactgtacaaac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
6059847 |
ctcctccaaagccgcaacacaccagcacattcgatccagaccattgaatcataccagctgcaaggaacaccaggaaaaaaacctatcaaactgtacaaac |
6059946 |
T |
|
| Q |
218 |
agccctcctccccaccacaatgctgaggactattttgcaaaaaatgttgttttcactcaacagcaaagatctatgttttttcaccaattttctttcctcc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6059947 |
agccctcctccccaccacaatgctgaggactattttgcaaaaaatgttgttttcactcaacagcaaagatctatgttttttcaccaattttctttcctcc |
6060046 |
T |
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| Q |
318 |
attctcttcatctc |
331 |
Q |
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||||||||| |||| |
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| T |
6060047 |
attctcttcttctc |
6060060 |
T |
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