View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20446_low_15 (Length: 315)
Name: NF20446_low_15
Description: NF20446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20446_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 13 - 298
Target Start/End: Complemental strand, 53043075 - 53042804
Alignment:
| Q |
13 |
caaaggtccaaatcattaacaatcccaccgacgaagctagcatcagtcaatcttttgactcccttcttttatcattgtacccctcaaaatccaccgacaa |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
53043075 |
caaaggtccaaatcattaacaatcccaccgacgaagctagcatcagtcaatcttttgactcccttcttttatcattatacccctcaaaatccaccgacaa |
53042976 |
T |
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| Q |
113 |
aacacaacacatccaacttcataaagggtatttccgtgattctacatgcagtaatacatacctacttctaaatctaggcagagatattctcccgcgatat |
212 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53042975 |
aacacaacctatccaacttcataaagggtatttccgtgattctacatgcagtaatacatacctacttctaaatctaggcagagatattctcccgcgatat |
53042876 |
T |
|
| Q |
213 |
ctatcgttactattttccactccattctctcctccccatttctcgccgcaaccgggtcgggttagatccatatccattttcctcca |
298 |
Q |
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|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53042875 |
ctatcgttaccattttccactc--------------catttctcgccgcaaccgggtcgggttagatccatatccattttcctcca |
53042804 |
T |
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