View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20446_low_2 (Length: 603)
Name: NF20446_low_2
Description: NF20446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20446_low_2 |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 465; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 20 - 589
Target Start/End: Complemental strand, 47719391 - 47718827
Alignment:
| Q |
20 |
ttttgaactcacagaaaggaagatgaaatgagacagtgaaaatacaaatcctgcactgcactgcacatacgttcaagttcaaa-caa-acatacagaact |
117 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||| |
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| T |
47719391 |
ttttgaactcagagaaaggaagatgaaatgagacagtgaaaatacaaatcctgcactgcacg-----tacgttcaagttcaactcaagacatacagaact |
47719297 |
T |
|
| Q |
118 |
cttggattaagggcaaattgggaaattcagggggcataaaagatttttgggtatttaccaaataaaagaagcacggcccatattccagaattattttcct |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
47719296 |
cttggattaagggcaaattgggaaattcagggggcataaaagatttttgggtatt-accaaataaaaaaagcacggcccatattccagaattattttcct |
47719198 |
T |
|
| Q |
218 |
tttccttcactcattagaagagtatataaacaccattctccataaccaaaaacacgattatcaaaatcgtaatcgataacccaac-gctataaccgtaaa |
316 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |
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| T |
47719197 |
tt-ccttcactcattagaagagtatataaacaccattctccataaccaaaaacacgattatcaaa-tcgtaatcgataacccaaccgctataaccgtaaa |
47719100 |
T |
|
| Q |
317 |
cccttcacaattaccatatcgaaatcgctaaaaccctaaacccttctgtgcatcgctttgtcatagccatgtatctctacaatctcactctgcaacgacc |
416 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47719099 |
cccttcacaattaccatatcgaaatctctaaaaccctaaacccttctgtgcatcgctttgtcatagccatgtatctctacaatctcactctgcaacgacc |
47719000 |
T |
|
| Q |
417 |
caccggcattgtctgtgcaatcaacggaaacttctccggctccgatgacggtaaaacccaagaaatcgtcgtcgccagaggcaaggttctcgaacttctt |
516 |
Q |
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||||||||||||||||||||||||||| |||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47718999 |
caccggcattgtctgtgcaatcaacggcaacttctccggctcagacgacggtattacccaagaaatcgtcgtcgccagaggcaaggttctcgaacttctt |
47718900 |
T |
|
| Q |
517 |
cgccccgacaaatttggccgcattcaatcaatcctttccgtccaagttttcggcaccattcgctccctgtctc |
589 |
Q |
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| T |
47718899 |
cgccccgacaaatttggccgcattcaatcaatcctttccgtccaagttttcggcaccattcgctccctgtctc |
47718827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 20 - 589
Target Start/End: Original strand, 47854692 - 47855256
Alignment:
| Q |
20 |
ttttgaactcacagaaaggaagatgaaatgagacagtgaaaatacaaatcctgcactgcactgcacatacgttcaagttcaaa-caa-acatacagaact |
117 |
Q |
| |
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||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||| |
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| T |
47854692 |
ttttgaactcagagaaaggaagatgaaacgagacagtgaaaatacaaatcctgcactgcacg-----tacgttcaagttcaactcaagacatacagaact |
47854786 |
T |
|
| Q |
118 |
cttggattaagggcaaattgggaaattcagggggcataaaagatttttgggtatttaccaaataaaagaagcacggcccatattccagaattattttcct |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
47854787 |
cttggattaagggcaaattgggaaattcagggggcataaaagatttttgggtatt-accaaataaaaaaagcacggcccatattccagaattattttcct |
47854885 |
T |
|
| Q |
218 |
tttccttcactcattagaagagtatataaacaccattctccataaccaaaaacacgattatcaaaatcgtaatcgataacccaac-gctataaccgtaaa |
316 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |
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| T |
47854886 |
tt-ccttcactcattagaagagtatataaacaccattctccataaccaaaaacacgattatcaaa-tcgtaatcgataacccaaccgctataaccgtaaa |
47854983 |
T |
|
| Q |
317 |
cccttcacaattaccatatcgaaatcgctaaaaccctaaacccttctgtgcatcgctttgtcatagccatgtatctctacaatctcactctgcaacgacc |
416 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47854984 |
cccttcacaattaccatatcgaaatctctaaaaccctaaacccttctgtgcatcgctttgtcatagccatgtatctctacaatctcactctgcaacgacc |
47855083 |
T |
|
| Q |
417 |
caccggcattgtctgtgcaatcaacggaaacttctccggctccgatgacggtaaaacccaagaaatcgtcgtcgccagaggcaaggttctcgaacttctt |
516 |
Q |
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||||||||||||||||||||||||||| |||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47855084 |
caccggcattgtctgtgcaatcaacggcaacttctccggctcagacgacggtattacccaagaaatcgtcgtcgccagaggcaaggttctcgaacttctt |
47855183 |
T |
|
| Q |
517 |
cgccccgacaaatttggccgcattcaatcaatcctttccgtccaagttttcggcaccattcgctccctgtctc |
589 |
Q |
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| T |
47855184 |
cgccccgacaaatttggccgcattcaatcaatcctttccgtccaagttttcggcaccattcgctccctgtctc |
47855256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 383 - 456
Target Start/End: Original strand, 52208309 - 52208382
Alignment:
| Q |
383 |
ccatgtatctctacaatctcactctgcaacgacccaccggcattgtctgtgcaatcaacggaaacttctccggc |
456 |
Q |
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|||||||||| |||||||||||||| |||||||||||||| || ||||||| |||||||| |||||||||||| |
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| T |
52208309 |
ccatgtatctttacaatctcactcttcaacgacccaccggaatcatctgtgccatcaacggcaacttctccggc |
52208382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 106 - 168
Target Start/End: Original strand, 15806 - 15868
Alignment:
| Q |
106 |
acatacagaactcttggattaagggcaaattgggaaattcagggggcataaaagatttttggg |
168 |
Q |
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| T |
15806 |
acatacaaaactcttgaatttagggcaaattgaaaaattcacggggcataaaagatttttggg |
15868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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