View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20446_low_21 (Length: 263)
Name: NF20446_low_21
Description: NF20446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20446_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 40293068 - 40293279
Alignment:
| Q |
1 |
cagcagattgtggagataagtacgtacttgtcactggttctggcggaaacataagcagcagcagcagcgaagcaagtaatgccgccaaaaacaaggaaag |
100 |
Q |
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| T |
40293068 |
cagcagattgtggagataagtacatacttgtcactggttctggcggaaacgtaagcagcagcagcagcgaagcaagtaatgccgccaaaaacaaggaaag |
40293167 |
T |
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| Q |
101 |
gctccatcaaagccaccttcacaacagtaagattaaacctgattcattcacacttaacttagatttcgtgtcacgcaagagagtctaatcgtcaaggtta |
200 |
Q |
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| T |
40293168 |
gctccatcaaagccaccttcacaacagtaagattaaacctaattcattcacacttaacttagatttcgtgtcacgcaagagagtctaatcgtcaaggtta |
40293267 |
T |
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| Q |
201 |
agctattttcac |
212 |
Q |
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|||||||||||| |
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| T |
40293268 |
agctattttcac |
40293279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 229 - 259
Target Start/End: Original strand, 40293296 - 40293326
Alignment:
| Q |
229 |
gggttttgcttcacaaacttaccctaataat |
259 |
Q |
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| T |
40293296 |
gggttttgcttcacaaacttaccctaataat |
40293326 |
T |
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