View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20446_low_23 (Length: 259)

Name: NF20446_low_23
Description: NF20446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20446_low_23
NF20446_low_23
[»] chr6 (2 HSPs)
chr6 (32-186)||(21944631-21944784)
chr6 (32-70)||(28107285-28107323)
[»] chr4 (7 HSPs)
chr4 (32-70)||(29655669-29655707)
chr4 (32-72)||(55735153-55735193)
chr4 (32-70)||(18442150-18442188)
chr4 (32-70)||(37245855-37245893)
chr4 (32-70)||(51259532-51259570)
chr4 (32-72)||(43840309-43840349)
chr4 (32-72)||(51734975-51735015)
[»] scaffold0922 (1 HSPs)
scaffold0922 (32-69)||(267-304)
[»] chr8 (2 HSPs)
chr8 (32-72)||(185594-185634)
chr8 (32-70)||(23854078-23854116)
[»] chr1 (2 HSPs)
chr1 (32-72)||(52109597-52109637)
chr1 (32-69)||(5609486-5609523)
[»] chr7 (4 HSPs)
chr7 (34-69)||(30824499-30824534)
chr7 (32-70)||(16098636-16098674)
chr7 (32-70)||(29200958-29200996)
chr7 (32-72)||(3601796-3601836)
[»] chr5 (4 HSPs)
chr5 (32-70)||(15988752-15988790)
chr5 (32-70)||(34652257-34652295)
chr5 (32-69)||(25730955-25730992)
chr5 (32-72)||(41940740-41940780)
[»] chr2 (1 HSPs)
chr2 (32-80)||(1417984-1418033)


Alignment Details
Target: chr6 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 32 - 186
Target Start/End: Original strand, 21944631 - 21944784
Alignment:
Q  32 atactagaaacaataacatagaattctgaattaccatggtcagagaca-aaaaagatattaattaccttcaaaacaatagagttaatattttctaaaata 130  Q
    ||||||||||||||| |||||||||||||||||||||| ||||||||  ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  21944631 atactagaaacaatagcatagaattctgaattaccatgttcagagacgtaaaaagatattaattaccttcaaaacaatagagttaataatttctaaaata 21944730  T
Q  131 tctacaataccaaattataagactatctgagaaaaacatttgtctcaaattataaa 186  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  21944731 tctacaataccaaattataagactatctgagaaaaaca--tgtctcaaattataaa 21944784  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 32 - 70
Target Start/End: Complemental strand, 28107323 - 28107285
Alignment:
Q  32 atactagaaacaataacatagaattctgaattaccatgg 70  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  28107323 atactagaaacaataacatagaattctgaatcaccatgg 28107285  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 32 - 70
Target Start/End: Original strand, 29655669 - 29655707
Alignment:
Q  32 atactagaaacaataacatagaattctgaattaccatgg 70  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  29655669 atactagaaacaataacatagaattctgaatcaccatgg 29655707  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 72
Target Start/End: Complemental strand, 55735193 - 55735153
Alignment:
Q  32 atactagaaacaataacatagaattctgaattaccatggtc 72  Q
    ||||||||||||||| ||||||||||||||| |||||||||    
T  55735193 atactagaaacaatagcatagaattctgaatcaccatggtc 55735153  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 70
Target Start/End: Original strand, 18442150 - 18442188
Alignment:
Q  32 atactagaaacaataacatagaattctgaattaccatgg 70  Q
    ||||||||||||||| ||||||||||||||| |||||||    
T  18442150 atactagaaacaatagcatagaattctgaatcaccatgg 18442188  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 70
Target Start/End: Original strand, 37245855 - 37245893
Alignment:
Q  32 atactagaaacaataacatagaattctgaattaccatgg 70  Q
    ||||||||||||||| ||||||||||||||| |||||||    
T  37245855 atactagaaacaatagcatagaattctgaatcaccatgg 37245893  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 70
Target Start/End: Original strand, 51259532 - 51259570
Alignment:
Q  32 atactagaaacaataacatagaattctgaattaccatgg 70  Q
    |||||||||||||||||||| |||||||||| |||||||    
T  51259532 atactagaaacaataacataaaattctgaatcaccatgg 51259570  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 43840309 - 43840349
Alignment:
Q  32 atactagaaacaataacatagaattctgaattaccatggtc 72  Q
    ||||||||||||||| |||||||||| |||| |||||||||    
T  43840309 atactagaaacaatagcatagaattccgaatcaccatggtc 43840349  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 51734975 - 51735015
Alignment:
Q  32 atactagaaacaataacatagaattctgaattaccatggtc 72  Q
    ||||||||||||||| ||||||||| ||||| |||||||||    
T  51734975 atactagaaacaatatcatagaattatgaatcaccatggtc 51735015  T

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Target: scaffold0922 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 69
Target Start/End: Original strand, 267 - 304
Alignment:
Q  32 atactagaaacaataacatagaattctgaattaccatg 69  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  267 atactagaaacaatagcatagaattctgaattaccatg 304  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 185594 - 185634
Alignment:
Q  32 atactagaaacaataacatagaattctgaattaccatggtc 72  Q
    ||||||||||||||| ||||||||||||||| |||||||||    
T  185594 atactagaaacaatagcatagaattctgaatcaccatggtc 185634  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 70
Target Start/End: Complemental strand, 23854116 - 23854078
Alignment:
Q  32 atactagaaacaataacatagaattctgaattaccatgg 70  Q
    ||||||||||||||| ||||||||||||||| |||||||    
T  23854116 atactagaaacaatagcatagaattctgaatcaccatgg 23854078  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 72
Target Start/End: Complemental strand, 52109637 - 52109597
Alignment:
Q  32 atactagaaacaataacatagaattctgaattaccatggtc 72  Q
    |||||||||||||||||||||||||| |||| |||||||||    
T  52109637 atactagaaacaataacatagaattccgaatcaccatggtc 52109597  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 69
Target Start/End: Complemental strand, 5609523 - 5609486
Alignment:
Q  32 atactagaaacaataacatagaattctgaattaccatg 69  Q
    ||||||||||||||| ||||||||||||||| ||||||    
T  5609523 atactagaaacaatagcatagaattctgaatcaccatg 5609486  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 34 - 69
Target Start/End: Original strand, 30824499 - 30824534
Alignment:
Q  34 actagaaacaataacatagaattctgaattaccatg 69  Q
    ||||||||||||||||||||||||||||| ||||||    
T  30824499 actagaaacaataacatagaattctgaatcaccatg 30824534  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 70
Target Start/End: Complemental strand, 16098674 - 16098636
Alignment:
Q  32 atactagaaacaataacatagaattctgaattaccatgg 70  Q
    ||||||||||||||| ||||||||||||||| |||||||    
T  16098674 atactagaaacaatatcatagaattctgaatcaccatgg 16098636  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 70
Target Start/End: Original strand, 29200958 - 29200996
Alignment:
Q  32 atactagaaacaataacatagaattctgaattaccatgg 70  Q
    ||||||||||||||| ||||||||||||||| |||||||    
T  29200958 atactagaaacaatagcatagaattctgaatcaccatgg 29200996  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 72
Target Start/End: Complemental strand, 3601836 - 3601796
Alignment:
Q  32 atactagaaacaataacatagaattctgaattaccatggtc 72  Q
    ||||||||||||||| |||| |||||||||| |||||||||    
T  3601836 atactagaaacaatagcataaaattctgaatcaccatggtc 3601796  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 70
Target Start/End: Original strand, 15988752 - 15988790
Alignment:
Q  32 atactagaaacaataacatagaattctgaattaccatgg 70  Q
    |||||||||||||||||||||||||| |||| |||||||    
T  15988752 atactagaaacaataacatagaattccgaatcaccatgg 15988790  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 70
Target Start/End: Original strand, 34652257 - 34652295
Alignment:
Q  32 atactagaaacaataacatagaattctgaattaccatgg 70  Q
    |||||||||||||||||||| |||||||||| |||||||    
T  34652257 atactagaaacaataacatataattctgaatcaccatgg 34652295  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 69
Target Start/End: Complemental strand, 25730992 - 25730955
Alignment:
Q  32 atactagaaacaataacatagaattctgaattaccatg 69  Q
    ||||||||||||||||||||||||||| ||| ||||||    
T  25730992 atactagaaacaataacatagaattcttaatcaccatg 25730955  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 41940740 - 41940780
Alignment:
Q  32 atactagaaacaataacatagaattctgaattaccatggtc 72  Q
    ||||||||||||||| ||||||||||||||| || ||||||    
T  41940740 atactagaaacaatagcatagaattctgaatcacaatggtc 41940780  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 80
Target Start/End: Original strand, 1417984 - 1418033
Alignment:
Q  32 atactagaaacaataacatagaattctgaattaccatggt-cagagacaa 80  Q
    ||||||||||||||| ||||||||||||||| ||||| || |||||||||    
T  1417984 atactagaaacaatagcatagaattctgaatcaccatagtccagagacaa 1418033  T

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