View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20446_low_3 (Length: 545)
Name: NF20446_low_3
Description: NF20446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20446_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 461; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 18 - 527
Target Start/End: Complemental strand, 10220664 - 10220155
Alignment:
| Q |
18 |
ggcatgatatgacatattggaaagccaagtttcttaatcatgaatattatggtatcacactatggtatgaatttgcaatagcataaaaactggggggatg |
117 |
Q |
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| T |
10220664 |
ggcatgatatgacatattggaaagccaagtttcttaatcatgaatattatggtatcacactatggtatgaatttgcaatagcataaaaactgggggaatg |
10220565 |
T |
|
| Q |
118 |
cgccatgcaatgctgcagcattttcttcttacatgtaaataaaatataaatggtacgctatgaaatcagctaaattaaatatattgcgaatatcattcaa |
217 |
Q |
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| T |
10220564 |
cgccatgcaatgctgcagcattttcttcttacatgtaaataaaatataaatggtacgctatgaaatcagctaaattaaatatattgcgaatatcattcaa |
10220465 |
T |
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| Q |
218 |
cagaagaaagatgaagaaaaacagatacatgatgcaatgcaaaagaagagaatcatacaagtaaagaatctccccagccttgacagtacactcaaacggt |
317 |
Q |
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| T |
10220464 |
cagaagaaagatgaagaaaaacagatacatgatgcaatgcaaaagaagagaatcatacaagtaaagaatctccccagccttgacagtacactcaaacggt |
10220365 |
T |
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| Q |
318 |
ggagggccattgaagtataaaggaaactttgaaatctcatcctccaagttctccggagaaggaaaagggttcacgctacaccaaggcacatacctagccg |
417 |
Q |
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| T |
10220364 |
ggagggccattgaagtataaaggaaactttgaaatctcgtcctccaagttctccggagaaggaaaagggttcacactacaccaaggcacatacctagttg |
10220265 |
T |
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| Q |
418 |
gcttgtcaagtaccaaatcaaaatctccagtttcctacnnnnnnntccacaacaccccaaatgatttcatctcgaaaagttaaaacttttaacattaaaa |
517 |
Q |
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| T |
10220264 |
gcttgtcaagttccaaatcaaactctccagtttcctacaaaaaaatccacaacaccccaaatgatttcatctcgaaaagttaaaacttttaacattaaaa |
10220165 |
T |
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| Q |
518 |
cagaaacccc |
527 |
Q |
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| T |
10220164 |
cagaaacccc |
10220155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 14 - 382
Target Start/End: Original strand, 13853311 - 13853672
Alignment:
| Q |
14 |
cataggcatgatatgacatattggaaagccaagtttcttaatcatgaatattatggtatcacactatggtatgaatttgcaatagcataaaaactggggg |
113 |
Q |
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| T |
13853311 |
cataagcatgacatgacatattggaaaaccaagttgcttaatcatgaatattatgg------------gtatgaatttgcaatagcataaaaactggggg |
13853398 |
T |
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| Q |
114 |
gatgcgccatgcaatgctgcagcattttcttcttacatgtaaataaaatataaatggtacgctatgaaatcagctaaattaaatatattgcgaatatcat |
213 |
Q |
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| T |
13853399 |
aatgtgccaagcaatgctgcaacattttcttcttacttgtaaattaaatataaatggtacaatatgaaatcaggtaaattaaatatgttgagaatatcat |
13853498 |
T |
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| Q |
214 |
tcaacagaagaaagatgaagaaaaacagatacatgatgcaatgc-----aaaagaagagaatcatacaagtaaagaatctccccagccttgacagtacac |
308 |
Q |
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| T |
13853499 |
tcaacagaagaaagattaagaaaaacagatacatgatgcaatgccaaggaaaagaagggaatcatacaagtaaagaatctccccattcttaacagtacat |
13853598 |
T |
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| Q |
309 |
tcaaacggtggagggccattgaagtataaaggaaactttgaaatctcatcctccaagttctccggagaaggaaa |
382 |
Q |
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| T |
13853599 |
tcaaacggtgaagggtcattgaagtataaaggaaactttgaaatctcatcctccaagttctccggagaaggaaa |
13853672 |
T |
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