View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20446_low_30 (Length: 225)
Name: NF20446_low_30
Description: NF20446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20446_low_30 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 144; Significance: 7e-76; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 12 - 203
Target Start/End: Original strand, 12834558 - 12834757
Alignment:
| Q |
12 |
aagaatatatttgaagctgaaactgttttttctttataacagctcaaaatcatatagcttgaagttaaagactacttttgattnnnnnnnnnttctattt |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
12834558 |
aagaatatatttgaagctgaaactgttttttctttataacagctcaaaatcatatagcttgaagttaaagactacttttgattaaaaaataattctattt |
12834657 |
T |
|
| Q |
112 |
gaaa--------acacgtcaaataatgatcaaaattacattttatgaatctaaaatcagttttatctctcacaaaagtaaattcatacatgtaaatgatt |
203 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12834658 |
gaaaacacgaaaacacgtcaaataatgatcaaaattacattttatgaatctaaaatcagttttatctctcacaaaagtaaattcatacatgtaaatgatt |
12834757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University