View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20446_low_31 (Length: 224)
Name: NF20446_low_31
Description: NF20446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20446_low_31 |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 134; Significance: 7e-70; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 20 - 211
Target Start/End: Complemental strand, 47719391 - 47719204
Alignment:
| Q |
20 |
ttttgaactcacagaaaggaagatgaaatgagacagtgaaaatacaaatcctgcactgcactgcacatacgttcaagttcaaa-caa-acatacagaact |
117 |
Q |
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| T |
47719391 |
ttttgaactcagagaaaggaagatgaaatgagacagtgaaaatacaaatcctgcactgcacg-----tacgttcaagttcaactcaagacatacagaact |
47719297 |
T |
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| Q |
118 |
cttggattaagggcaaattgggaaattcagggggcataaaagatttttgggtatttaccaaataaaagaagcacggcccatattccagaattat |
211 |
Q |
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| T |
47719296 |
cttggattaagggcaaattgggaaattcagggggcataaaagatttttgggta-ttaccaaataaaaaaagcacggcccatattccagaattat |
47719204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 20 - 211
Target Start/End: Original strand, 47854692 - 47854879
Alignment:
| Q |
20 |
ttttgaactcacagaaaggaagatgaaatgagacagtgaaaatacaaatcctgcactgcactgcacatacgttcaagttcaaa-caa-acatacagaact |
117 |
Q |
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| T |
47854692 |
ttttgaactcagagaaaggaagatgaaacgagacagtgaaaatacaaatcctgcactgcacg-----tacgttcaagttcaactcaagacatacagaact |
47854786 |
T |
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| Q |
118 |
cttggattaagggcaaattgggaaattcagggggcataaaagatttttgggtatttaccaaataaaagaagcacggcccatattccagaattat |
211 |
Q |
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| T |
47854787 |
cttggattaagggcaaattgggaaattcagggggcataaaagatttttgggta-ttaccaaataaaaaaagcacggcccatattccagaattat |
47854879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 106 - 168
Target Start/End: Original strand, 15806 - 15868
Alignment:
| Q |
106 |
acatacagaactcttggattaagggcaaattgggaaattcagggggcataaaagatttttggg |
168 |
Q |
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| T |
15806 |
acatacaaaactcttgaatttagggcaaattgaaaaattcacggggcataaaagatttttggg |
15868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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