View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20446_low_33 (Length: 215)
Name: NF20446_low_33
Description: NF20446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20446_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 177; Significance: 1e-95; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 13 - 197
Target Start/End: Complemental strand, 40293109 - 40292925
Alignment:
| Q |
13 |
cagaacctgtgacaagtatgtacttatctccacaatctgctgttactttctgccattccatctctaatgttttataataattatcgttgttatttttgta |
112 |
Q |
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| T |
40293109 |
cagaaccagtgacaagtatgtacttatctccacaatctgctgttactttctgccattccatctctaatgttttataataattattgttgttatttttgta |
40293010 |
T |
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| Q |
113 |
cagggatgcagaaattcttaaatctgttacccgggtcaatcagctgaaggacctaggtatgtatgtttcttttttaagggattca |
197 |
Q |
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| T |
40293009 |
cagggatgcagaaattcttaaatctgttacccgggtcaatcagctgaaggacctaggtatgtatgtttcttttttaagggattca |
40292925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 174
Target Start/End: Complemental strand, 40266955 - 40266886
Alignment:
| Q |
105 |
tttttgtacagggatgcagaaattcttaaatctgttacccgggtcaatcagctgaaggacctaggtatgt |
174 |
Q |
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| T |
40266955 |
tttttttataggaatgcagaaattcttaaatctgttacccaggtcaataagttgatggacataggcatgt |
40266886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 170
Target Start/End: Complemental strand, 40259131 - 40259087
Alignment:
| Q |
126 |
attcttaaatctgttacccgggtcaatcagctgaaggacctaggt |
170 |
Q |
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| T |
40259131 |
attcttaaatctgttaaccgggttaatcagctgagggagctaggt |
40259087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 113 - 174
Target Start/End: Complemental strand, 37531660 - 37531599
Alignment:
| Q |
113 |
cagggatgcagaaattcttaaatctgttacccgggtcaatcagctgaaggacctaggtatgt |
174 |
Q |
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| T |
37531660 |
cagggatgcggaaattcttaaatctgtgacccgggtcaatcagttaaaggagctaggtatgt |
37531599 |
T |
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